Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47230 * 269.99827 * 3 2 1 5 5 H 1.48500 * 109.47068 * 30.00373 * 3 2 1 6 6 H 1.48499 * 109.46801 * 150.00000 * 3 2 1 7 7 C 1.38811 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99829 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99773 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47201 * 325.00131 * 10 9 7 12 12 C 1.52999 * 109.47053 * 205.00391 * 10 9 7 13 13 N 1.46494 * 109.47179 * 55.00069 * 12 10 9 14 14 C 1.34786 * 120.00067 * 180.02562 * 13 12 10 15 15 O 1.21279 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99946 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47158 * 179.97438 * 16 14 13 18 18 C 1.36178 * 120.19431 * 265.00769 * 17 16 14 19 19 C 1.39313 * 120.86990 * 179.97438 * 18 17 16 20 20 C 1.36109 * 121.06827 * 359.97438 * 19 18 17 21 21 C 1.40554 * 119.74449 * 0.27978 * 20 19 18 22 22 N 1.33689 * 121.07244 * 180.27964 * 21 20 19 23 23 C 1.31084 * 121.32245 * 179.74423 * 22 21 20 24 24 C 1.39331 * 121.74804 * 359.69691 * 23 22 21 25 25 C 1.36566 * 119.94360 * 0.02562 * 24 23 22 26 26 C 1.40393 * 120.19573 * 84.97915 * 17 16 14 27 27 C 1.52996 * 109.47250 * 85.00332 * 10 9 7 28 28 C 1.53002 * 117.49626 * 8.74552 * 27 10 9 29 29 C 1.53001 * 117.49779 * 300.08866 * 27 10 9 30 30 H 0.96997 * 120.00494 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00119 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47042 * 294.99887 * 12 10 9 33 33 H 1.09002 * 109.47295 * 175.00064 * 12 10 9 34 34 H 0.96997 * 120.00198 * 0.02562 * 13 12 10 35 35 H 1.09003 * 109.47083 * 59.99935 * 16 14 13 36 36 H 1.09002 * 109.47324 * 300.00069 * 16 14 13 37 37 H 1.08007 * 119.56281 * 359.94395 * 18 17 16 38 38 H 1.08007 * 119.46405 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.12383 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.12024 * 179.72520 * 23 22 21 41 41 H 1.08001 * 120.02335 * 179.97438 * 24 23 22 42 42 H 1.08007 * 120.92795 * 180.02562 * 25 24 23 43 43 H 1.09000 * 115.55465 * 154.41753 * 27 10 9 44 44 H 1.08998 * 117.50304 * 0.02562 * 28 27 10 45 45 H 1.09004 * 117.50071 * 145.02522 * 28 27 10 46 46 H 1.09005 * 117.49765 * 214.97630 * 29 27 10 47 47 H 1.09002 * 117.49933 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5649 -3.2063 0.5888 12 6 5.4995 -2.2588 0.6081 13 7 5.3624 -1.6635 1.9395 14 6 6.4607 -1.3852 2.6697 15 8 7.5623 -1.6281 2.2245 16 6 6.3196 -0.7723 4.0391 17 6 7.6862 -0.5635 4.6392 18 6 8.2194 -1.5006 5.4710 19 6 9.4816 -1.3222 6.0331 20 6 10.2177 -0.2086 5.7675 21 6 9.6993 0.7838 4.9179 22 7 10.4017 1.8855 4.6346 23 6 9.9250 2.8118 3.8390 24 6 8.6701 2.6936 3.2453 25 6 7.9024 1.5905 3.4880 26 6 8.4173 0.5980 4.3434 27 6 4.2577 -2.9757 -1.4380 28 6 3.8368 -2.0303 -2.5649 29 6 2.9740 -3.2480 -2.2246 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 6.0785 -1.5916 -0.0305 33 1 6.0109 -3.2179 0.6898 34 1 4.4813 -1.4695 2.2957 35 1 5.7408 -1.4394 4.6779 36 1 5.8081 0.1867 3.9571 37 1 7.6561 -2.3936 5.6984 38 1 9.8824 -2.0799 6.6902 39 1 11.1944 -0.0858 6.2119 40 1 10.5211 3.6897 3.6380 41 1 8.3044 3.4741 2.5945 42 1 6.9275 1.4822 3.0359 43 1 5.1093 -3.6306 -1.6222 44 1 3.4565 -1.0486 -2.2827 45 1 4.4112 -2.0636 -3.4907 46 1 2.9812 -4.0819 -2.9266 47 1 2.0256 -3.0680 -1.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265362551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = 39.974884 kcal Electronic energy + Delta-G solvation = -28789.760047 eV Core-core repulsion = 24937.725717 eV Total energy + Delta-G solvation = -3852.034330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.98033 -40.67114 -39.27038 -38.09175 -35.94681 -35.11326 -35.06152 -33.06210 -32.32573 -31.49209 -30.41185 -28.44557 -25.38136 -25.12945 -24.56568 -24.16586 -23.05264 -22.22655 -21.29316 -20.68271 -19.61256 -19.09345 -18.13973 -18.04702 -17.90355 -17.01544 -16.84520 -16.40101 -16.17291 -15.66811 -15.58753 -15.32486 -15.27747 -14.94295 -14.68348 -14.48328 -14.42469 -14.35903 -14.08060 -13.85187 -13.25339 -12.98167 -12.85213 -12.66248 -12.61302 -12.52382 -12.50511 -12.16006 -12.12414 -12.03858 -11.62427 -11.51191 -11.09234 -11.06426 -10.81478 -10.65190 -10.51663 -10.03221 -9.72484 -9.31796 -9.16042 -7.95546 -5.28770 -0.59711 -0.13176 0.96986 1.38061 1.42302 1.48779 1.64717 1.93933 2.33589 2.51502 3.07468 3.13049 3.35997 3.37747 3.45023 3.62027 3.78937 3.82484 3.86116 3.88067 3.99287 4.10233 4.22874 4.24793 4.30025 4.31251 4.46652 4.48568 4.53906 4.54392 4.60718 4.65905 4.85119 4.87415 4.96171 5.01992 5.06402 5.13303 5.15907 5.20732 5.40304 5.43860 5.48677 5.54726 5.59281 5.60189 5.88772 5.91820 6.26749 6.59222 6.90194 7.12850 7.25885 7.86568 8.05760 9.25560 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.003042 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.009201 B = 9201.771802 C =10109.677851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.055 4.055 3 Si 0.938 3.062 4 H -0.292 1.292 5 H -0.304 1.304 6 H -0.247 1.247 7 C -0.206 4.206 8 H 0.065 0.935 9 N -0.739 5.739 10 C 0.198 3.802 11 H 0.064 0.936 12 C 0.127 3.873 13 N -0.715 5.715 14 C 0.514 3.486 15 O -0.577 6.577 16 C -0.105 4.105 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.092 4.092 20 C -0.114 4.114 21 C 0.098 3.902 22 N -0.501 5.501 23 C 0.124 3.876 24 C -0.177 4.177 25 C -0.072 4.072 26 C -0.105 4.105 27 C -0.165 4.165 28 C -0.172 4.172 29 C -0.176 4.176 30 H 0.254 0.746 31 H 0.364 0.636 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.413 0.587 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.189 0.811 41 H 0.163 0.837 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.089 -1.049 10.082 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.247 4.247 3 Si 0.768 3.232 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.172 1.172 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.382 5.382 10 C 0.090 3.910 11 H 0.082 0.918 12 C 0.002 3.998 13 N -0.367 5.367 14 C 0.301 3.699 15 O -0.457 6.457 16 C -0.145 4.145 17 C -0.054 4.054 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.022 4.022 22 N -0.210 5.210 23 C -0.049 4.049 24 C -0.197 4.197 25 C -0.098 4.098 26 C -0.107 4.107 27 C -0.186 4.186 28 C -0.209 4.209 29 C -0.213 4.213 30 H 0.063 0.937 31 H 0.198 0.802 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.249 0.751 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.206 0.794 41 H 0.180 0.820 42 H 0.157 0.843 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.487 -1.319 10.217 22.043 hybrid contribution -1.421 1.322 -0.738 2.076 sum 18.066 0.003 9.479 20.402 Atomic orbital electron populations 1.69850 1.07035 1.26186 1.60279 1.25264 0.95660 1.00313 1.03421 0.85666 0.78968 0.81103 0.77491 1.21902 1.23114 1.17152 1.18881 0.81977 0.93084 1.39718 0.91739 1.42758 1.02545 1.03279 1.89628 1.20089 0.90274 0.87791 0.92886 0.91848 1.21462 0.96679 0.98661 0.82957 1.46021 1.09717 1.63227 1.17772 1.20827 0.83798 0.77911 0.87357 1.90702 1.27118 1.54662 1.73211 1.20783 0.95739 1.04641 0.93291 1.19282 0.95373 0.93704 0.97079 1.21161 0.96317 0.98869 0.96533 1.21224 0.93741 0.97372 0.98777 1.21026 1.01152 0.93107 0.97954 1.19223 0.91108 0.94065 0.97824 1.68061 1.35162 1.02120 1.15617 1.23505 0.93656 0.97182 0.90532 1.22214 0.96012 0.99528 1.01930 1.21726 1.00351 0.92985 0.94763 1.18859 0.95878 0.96554 0.99440 1.23026 0.98566 1.03134 0.93834 1.22795 1.03823 0.95611 0.98691 1.22821 0.95227 0.99649 1.03559 0.93714 0.80223 0.92537 0.90097 0.75051 0.84436 0.86631 0.83161 0.82049 0.83809 0.79391 0.81966 0.84331 0.86245 0.90414 0.88633 0.88246 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.00 13.97 21.65 0.30 -58.70 16 2 C -0.06 -2.95 5.50 84.86 0.47 -2.48 16 3 Si 0.94 42.03 27.74 68.60 1.90 43.94 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.25 -9.63 6.52 99.48 0.65 -8.98 16 7 C -0.21 -10.11 8.64 84.03 0.73 -9.39 16 8 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 9 N -0.74 -28.77 2.88 -322.94 -0.93 -29.71 16 10 C 0.20 6.27 2.86 44.99 0.13 6.40 16 11 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 12 C 0.13 3.53 5.21 86.38 0.45 3.98 16 13 N -0.72 -18.78 5.39 -463.06 -2.49 -21.27 16 14 C 0.51 13.70 7.82 87.65 0.69 14.38 16 15 O -0.58 -19.79 16.03 -3.03 -0.05 -19.84 16 16 C -0.11 -2.10 5.24 29.10 0.15 -1.95 16 17 C -0.05 -1.22 4.38 -19.82 -0.09 -1.31 16 18 C -0.11 -2.15 9.58 22.05 0.21 -1.94 16 19 C -0.09 -1.65 9.94 22.03 0.22 -1.43 16 20 C -0.11 -2.51 9.98 22.34 0.22 -2.29 16 21 C 0.10 2.64 6.60 40.28 0.27 2.90 16 22 N -0.50 -13.11 10.34 -188.64 -1.95 -15.06 16 23 C 0.12 2.57 11.15 85.07 0.95 3.52 16 24 C -0.18 -3.61 10.03 22.14 0.22 -3.38 16 25 C -0.07 -1.74 9.37 22.50 0.21 -1.53 16 26 C -0.11 -2.76 5.74 -21.28 -0.12 -2.88 16 27 C -0.16 -4.94 5.71 -10.79 -0.06 -5.00 16 28 C -0.17 -5.75 9.74 30.62 0.30 -5.45 16 29 C -0.18 -5.87 9.87 30.62 0.30 -5.56 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.36 14.21 5.66 -92.71 -0.52 13.68 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.41 10.55 8.14 -92.71 -0.75 9.80 16 35 H 0.14 1.91 8.04 -2.39 -0.02 1.89 16 36 H 0.12 2.06 6.73 -2.39 -0.02 2.04 16 37 H 0.15 2.10 8.05 -2.91 -0.02 2.07 16 38 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.14 3.07 6.57 -2.91 -0.02 3.05 16 43 H 0.12 2.94 8.11 -2.39 -0.02 2.92 16 44 H 0.08 3.13 6.68 -2.39 -0.02 3.11 16 45 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 46 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 47 H 0.07 2.98 6.22 -2.39 -0.01 2.97 16 Total: -1.00 -71.36 386.98 1.69 -69.67 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -0.33 Total: 44.39 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 5.24 Total: -13.42 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -5.07 Total: -124.74 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.90 Total: 43.94 kcal Total: -71.36 1.69 -69.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265362551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.644 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds