Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99875 * 2 1 4 4 H 1.48499 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47263 * 300.00193 * 3 2 1 6 6 H 1.48503 * 109.47134 * 60.00366 * 3 2 1 7 7 C 1.38809 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47464 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49404 * 55.06536 * 11 10 9 13 13 C 1.53045 * 109.49712 * 175.16215 * 11 10 9 14 14 C 1.53041 * 109.53375 * 181.31623 * 13 11 10 15 15 C 1.53621 * 109.24373 * 298.51036 * 14 13 11 16 16 N 1.46919 * 108.54364 * 54.85996 * 15 14 13 17 17 C 1.34773 * 120.63617 * 126.36900 * 16 15 14 18 18 O 1.21546 * 120.00518 * 185.58506 * 17 16 15 19 19 C 1.47893 * 119.99534 * 5.58302 * 17 16 15 20 20 C 1.40600 * 119.72962 * 222.13419 * 19 17 16 21 21 C 1.35846 * 120.95325 * 179.97438 * 20 19 17 22 22 C 1.40492 * 119.87940 * 0.04314 * 21 20 19 23 23 C 1.40487 * 121.84135 * 179.97438 * 22 21 20 24 24 N 1.31204 * 119.94096 * 180.02562 * 23 22 21 25 25 C 1.32557 * 122.81026 * 359.97438 * 24 23 22 26 26 C 1.36229 * 121.83878 * 359.97438 * 25 24 23 27 27 C 1.40756 * 118.67882 * 0.02562 * 26 25 24 28 28 C 1.38529 * 119.73184 * 42.15601 * 19 17 16 29 29 C 1.46929 * 118.74005 * 306.09176 * 16 15 14 30 30 H 0.97003 * 119.99724 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00603 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47250 * 60.00017 * 10 9 7 33 33 H 1.09004 * 109.47374 * 300.00668 * 10 9 7 34 34 H 1.08997 * 109.45911 * 301.33914 * 13 11 10 35 35 H 1.09006 * 109.45963 * 61.31257 * 13 11 10 36 36 H 1.09000 * 109.49744 * 58.59005 * 14 13 11 37 37 H 1.09000 * 109.49133 * 178.65195 * 14 13 11 38 38 H 1.09002 * 109.74100 * 295.12294 * 15 14 13 39 39 H 1.09000 * 109.66682 * 174.55418 * 15 14 13 40 40 H 1.08004 * 119.52498 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.06090 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.02511 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.08191 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.65570 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.35989 * 359.95561 * 28 19 17 46 46 H 1.08998 * 109.59216 * 173.64736 * 29 16 15 47 47 H 1.09003 * 109.58942 * 293.93376 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3805 -4.7136 -0.8438 13 6 1.8245 -6.1421 -0.1229 14 6 0.8289 -7.3039 -0.1566 15 6 0.0305 -7.3248 1.1557 16 7 -0.5882 -6.0061 1.3472 17 6 -1.9141 -5.8940 1.5611 18 8 -2.4300 -4.7949 1.6169 19 6 -2.7413 -7.1086 1.7280 20 6 -3.9996 -7.1861 1.1055 21 6 -4.7797 -8.2898 1.2417 22 6 -4.3303 -9.3735 2.0146 23 6 -5.1031 -10.5345 2.1835 24 7 -4.6470 -11.5243 2.9141 25 6 -3.4668 -11.4880 3.5164 26 6 -2.6410 -10.4092 3.4148 27 6 -3.0612 -9.3068 2.6472 28 6 -2.2703 -8.1604 2.4966 29 6 0.2671 -4.8120 1.3073 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6846 -3.7146 0.8895 33 1 2.6847 -3.7145 -0.8905 34 1 2.4116 -6.1400 -1.0412 35 1 2.4894 -6.2586 0.7330 36 1 0.1478 -7.1751 -0.9978 37 1 1.3702 -8.2435 -0.2673 38 1 0.6986 -7.5396 1.9897 39 1 -0.7457 -8.0880 1.1006 40 1 -4.3508 -6.3564 0.5099 41 1 -5.7437 -8.3341 0.7568 42 1 -6.0722 -10.6117 1.7130 43 1 -3.1506 -12.3376 4.1033 44 1 -1.6833 -10.3999 3.9140 45 1 -1.3031 -8.0979 2.9732 46 1 -0.3530 -3.9167 1.3523 47 1 0.9524 -4.8248 2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265630848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = 32.681497 kcal Electronic energy + Delta-G solvation = -28689.270756 eV Core-core repulsion = 24836.920160 eV Total energy + Delta-G solvation = -3852.350595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 4.63 seconds Orbital eigenvalues (eV) -41.34765 -40.14748 -37.93331 -37.07562 -35.00259 -33.53920 -32.91448 -31.77846 -31.54937 -30.19068 -29.55542 -26.26185 -25.58500 -24.55910 -23.86007 -23.23925 -22.64548 -21.46584 -20.56194 -19.51191 -18.21865 -17.67423 -17.32846 -16.98353 -16.25975 -15.99185 -15.32001 -15.20368 -14.84560 -14.68574 -14.48710 -14.35759 -14.12993 -13.90659 -13.65383 -13.47223 -13.11681 -12.95213 -12.92861 -12.88360 -12.64813 -12.32732 -12.27266 -11.56779 -11.43310 -11.13781 -11.04187 -10.85173 -10.70523 -10.57383 -10.39959 -10.32567 -10.05113 -9.94262 -9.77174 -9.61290 -9.37749 -8.85938 -8.58270 -8.45036 -6.88632 -5.71246 -3.01174 -0.14495 0.38655 1.46261 2.33142 2.83100 3.06652 3.45992 3.50883 3.53752 3.67653 3.99696 4.10635 4.16826 4.38667 4.44883 4.58542 4.64797 4.67578 4.73834 4.83852 4.91579 4.95556 5.15003 5.16678 5.25064 5.26904 5.29322 5.40439 5.53544 5.60502 5.61961 5.68581 5.76062 5.80407 5.87774 5.89864 5.98651 6.07042 6.10255 6.18315 6.20020 6.34974 6.36715 6.51216 6.59311 6.75684 6.86556 7.38163 7.56862 7.73725 8.13442 8.46401 9.57492 10.15229 10.49415 11.51080 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.002338 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.171112 B =11971.511179 C =12794.434522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.096 3.904 16 N -0.603 5.603 17 C 0.549 3.451 18 O -0.516 6.516 19 C -0.091 4.091 20 C -0.075 4.075 21 C -0.089 4.089 22 C -0.101 4.101 23 C 0.146 3.854 24 N -0.487 5.487 25 C 0.072 3.928 26 C -0.148 4.148 27 C -0.031 4.031 28 C -0.081 4.081 29 C 0.120 3.880 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.105 0.895 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -26.747 4.280 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.336 5.336 17 C 0.336 3.664 18 O -0.392 6.392 19 C -0.095 4.095 20 C -0.094 4.094 21 C -0.109 4.109 22 C -0.103 4.103 23 C -0.026 4.026 24 N -0.195 5.195 25 C -0.070 4.070 26 C -0.167 4.167 27 C -0.036 4.036 28 C -0.099 4.099 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.171 0.829 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.123 0.877 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.317 -26.832 4.518 27.933 hybrid contribution 0.803 1.709 -0.093 1.890 sum -5.515 -25.123 4.425 26.099 Atomic orbital electron populations 1.69689 1.05058 1.25533 1.57470 1.24768 0.95508 0.97702 1.03013 0.86134 0.78722 0.84247 0.77174 1.20599 1.21906 1.21872 1.19242 0.90994 0.84156 1.42870 0.91170 1.42425 1.05961 0.99950 1.89473 1.20633 0.92943 0.85155 0.98023 1.21686 0.97975 0.95166 0.97804 0.90708 1.21532 0.97452 0.93703 1.02384 1.21988 0.98603 0.99185 0.97359 1.22161 0.97570 0.84789 0.98133 1.48100 1.06670 1.08335 1.70520 1.18356 0.81908 0.88632 0.77505 1.90888 1.71669 1.27098 1.49538 1.20132 0.95763 0.94265 0.99353 1.20939 0.92125 0.98358 0.97951 1.20918 1.00090 0.92143 0.97762 1.19154 0.95101 0.96769 0.99313 1.23258 0.98667 0.87414 0.93270 1.67390 1.14952 1.29459 1.07680 1.22193 0.89709 0.97818 0.97325 1.21965 1.01530 0.93775 0.99466 1.18077 0.93830 0.94720 0.96972 1.21522 0.99392 0.91258 0.97770 1.21792 0.93232 0.87712 0.97385 0.93522 0.78076 0.96246 0.96036 0.91431 0.91723 0.91438 0.90861 0.91158 0.89464 0.84353 0.84173 0.81782 0.82891 0.84215 0.84133 0.87669 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.87 5.38 -59.91 -0.32 -19.19 16 10 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 11 C -0.11 -1.70 2.38 -90.50 -0.22 -1.92 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.11 -1.32 5.17 -26.69 -0.14 -1.46 16 14 C -0.13 -1.28 6.10 -26.39 -0.16 -1.44 16 15 C 0.10 0.92 4.96 -3.49 -0.02 0.91 16 16 N -0.60 -8.24 2.97 -173.60 -0.51 -8.75 16 17 C 0.55 8.39 7.28 -12.31 -0.09 8.30 16 18 O -0.52 -10.37 16.36 5.33 0.09 -10.28 16 19 C -0.09 -1.06 5.08 -104.95 -0.53 -1.60 16 20 C -0.08 -0.79 9.54 -39.55 -0.38 -1.17 16 21 C -0.09 -0.74 9.77 -39.59 -0.39 -1.12 16 22 C -0.10 -0.89 5.75 -106.78 -0.61 -1.50 16 23 C 0.15 1.16 11.04 -16.97 -0.19 0.97 16 24 N -0.49 -4.50 10.29 -13.15 -0.14 -4.63 16 25 C 0.07 0.56 11.07 -17.96 -0.20 0.36 16 26 C -0.15 -1.09 9.88 -39.35 -0.39 -1.47 16 27 C -0.03 -0.28 5.74 -106.83 -0.61 -0.89 16 28 C -0.08 -0.76 7.17 -38.78 -0.28 -1.04 16 29 C 0.12 1.97 5.52 -3.71 -0.02 1.95 16 30 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.39 10.62 6.89 -40.82 -0.28 10.34 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.09 0.73 4.83 -51.93 -0.25 0.48 16 40 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.14 1.09 6.73 -52.49 -0.35 0.74 16 46 H 0.11 2.18 6.20 -51.93 -0.32 1.86 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -35.50 380.85 -10.60 -46.10 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.67 Total: 6.98 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -4.49 Total: -5.48 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.25 Total: -60.85 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.50 -10.60 -46.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265630848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.781 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.63 seconds