Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48504 * 109.46772 * 270.00198 * 3 2 1 5 5 H 1.48500 * 109.46913 * 29.99675 * 3 2 1 6 6 H 1.48495 * 109.47435 * 149.99916 * 3 2 1 7 7 C 1.38821 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99436 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99852 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47476 * 175.33300 * 10 9 7 12 12 H 1.09001 * 109.58280 * 309.12970 * 11 10 9 13 13 C 1.53191 * 109.58975 * 188.70115 * 11 10 9 14 14 C 1.53045 * 109.31184 * 185.57572 * 13 11 10 15 15 C 1.53039 * 109.53443 * 61.36513 * 14 13 11 16 16 C 1.53624 * 109.24370 * 298.50419 * 15 14 13 17 17 N 1.46925 * 109.58552 * 69.40518 * 11 10 9 18 18 C 1.34773 * 120.63167 * 353.38011 * 17 11 10 19 19 O 1.21561 * 120.00290 * 6.46036 * 18 17 11 20 20 C 1.47760 * 119.99729 * 186.45764 * 18 17 11 21 21 C 1.40601 * 120.26993 * 37.73481 * 20 18 17 22 22 N 1.30800 * 121.53997 * 179.97438 * 21 20 18 23 23 C 1.33822 * 121.71894 * 359.97438 * 22 21 20 24 24 C 1.40529 * 120.82373 * 180.02562 * 23 22 21 25 25 C 1.36134 * 119.81430 * 179.97438 * 24 23 22 26 26 C 1.39350 * 121.08990 * 0.02562 * 25 24 23 27 27 C 1.36141 * 120.83210 * 0.22987 * 26 25 24 28 28 C 1.40540 * 119.61390 * 359.50111 * 27 26 25 29 29 C 1.39013 * 120.26815 * 217.70516 * 20 18 17 30 30 H 0.97000 * 120.00205 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00366 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47620 * 55.33278 * 10 9 7 33 33 H 1.09005 * 109.47353 * 295.32988 * 10 9 7 34 34 H 1.08997 * 109.49480 * 305.52575 * 13 11 10 35 35 H 1.09001 * 109.49564 * 65.62315 * 13 11 10 36 36 H 1.08996 * 109.45663 * 181.38815 * 14 13 11 37 37 H 1.08998 * 109.45981 * 301.34266 * 14 13 11 38 38 H 1.08993 * 109.50200 * 58.59033 * 15 14 13 39 39 H 1.09004 * 109.49099 * 178.64949 * 15 14 13 40 40 H 1.08994 * 109.74504 * 295.12558 * 16 15 14 41 41 H 1.08995 * 109.66264 * 174.54995 * 16 15 14 42 42 H 1.07993 * 119.22673 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.09263 * 359.95622 * 24 23 22 44 44 H 1.07997 * 119.45870 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.58004 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.18892 * 179.72154 * 27 26 25 47 47 H 1.07995 * 121.02035 * 0.02795 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.6123 -2.1936 -0.1157 12 1 5.7957 -1.5228 -0.9550 13 6 6.3626 -3.5113 -0.3340 14 6 7.8696 -3.2454 -0.3108 15 6 8.2690 -2.6827 1.0552 16 6 7.5399 -1.3505 1.2869 17 7 6.0966 -1.5735 1.1252 18 6 5.2330 -1.2111 2.0943 19 8 4.0563 -1.5013 1.9995 20 6 5.7164 -0.4611 3.2720 21 6 6.7109 0.5221 3.1268 22 7 7.1566 1.2011 4.1521 23 6 6.6893 0.9954 5.3890 24 6 7.1813 1.7362 6.4771 25 6 6.6908 1.5105 7.7268 26 6 5.7040 0.5523 7.9502 27 6 5.2058 -0.1890 6.9228 28 6 5.6850 0.0214 5.6184 29 6 5.1911 -0.7214 4.5325 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3621 0.0007 32 1 3.7880 -3.0776 -0.8444 33 1 3.9127 -3.0055 0.9298 34 1 6.1046 -4.2125 0.4596 35 1 6.0825 -3.9338 -1.2989 36 1 8.4055 -4.1774 -0.4905 37 1 8.1233 -2.5252 -1.0885 38 1 7.9932 -3.3918 1.8356 39 1 9.3460 -2.5162 1.0792 40 1 7.8795 -0.6135 0.5592 41 1 7.7434 -0.9917 2.2957 42 1 7.1163 0.7212 2.1458 43 1 7.9466 2.4823 6.3224 44 1 7.0734 2.0828 8.5589 45 1 5.3327 0.3930 8.9518 46 1 4.4443 -0.9319 7.1084 47 1 4.4265 -1.4710 4.6728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265684032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = 82.099499 kcal Electronic energy + Delta-G solvation = -30152.737758 eV Core-core repulsion = 26302.530088 eV Total energy + Delta-G solvation = -3850.207670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.16017 -40.04436 -37.34734 -36.92947 -34.73343 -33.43554 -32.89644 -32.06610 -30.56392 -30.21076 -30.13157 -26.57056 -24.88464 -24.67231 -23.84062 -22.49407 -22.17382 -21.57469 -20.69188 -19.51087 -18.32807 -17.81743 -17.21329 -16.66122 -15.94279 -15.63735 -15.17528 -14.85978 -14.62319 -14.42814 -14.36357 -14.17014 -14.04599 -13.85585 -13.60017 -13.29913 -13.17453 -13.03099 -12.60307 -12.40491 -12.36329 -11.99132 -11.89898 -11.79844 -11.60712 -11.27031 -11.11045 -10.88966 -10.78696 -10.63791 -10.57825 -10.29657 -10.03260 -9.76663 -9.43065 -8.90055 -8.81617 -8.55619 -8.36341 -8.26719 -6.86240 -5.59972 -2.85438 0.19132 0.54847 1.80545 2.57967 3.13306 3.33179 3.47044 3.50680 3.54190 3.97206 4.11040 4.43390 4.52569 4.63016 4.67186 4.74628 4.75750 4.80253 4.81680 4.94118 4.98410 5.01791 5.08966 5.26053 5.31340 5.36560 5.49112 5.62511 5.64381 5.71437 5.71940 5.74012 5.78053 5.82863 5.91310 5.92494 5.99307 6.01075 6.11303 6.15646 6.23590 6.32742 6.36071 6.51866 6.64607 6.79504 7.14032 7.69336 7.74742 8.15894 8.57833 8.65368 9.38974 10.12273 10.32475 11.59676 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.004809 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.675264 B = 5821.436006 C = 7884.889717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.002 4.002 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.087 0.913 9 N -0.723 5.723 10 C 0.163 3.837 11 C 0.139 3.861 12 H 0.071 0.929 13 C -0.126 4.126 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.100 3.900 17 N -0.612 5.612 18 C 0.517 3.483 19 O -0.435 6.435 20 C -0.171 4.171 21 C 0.155 3.845 22 N -0.480 5.480 23 C 0.133 3.867 24 C -0.097 4.097 25 C -0.098 4.098 26 C -0.123 4.123 27 C -0.086 4.086 28 C -0.107 4.107 29 C -0.004 4.004 30 H 0.256 0.744 31 H 0.355 0.645 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.495 -3.152 11.155 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.196 4.196 3 Si 0.713 3.287 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.340 4.340 8 H 0.105 0.895 9 N -0.367 5.367 10 C 0.036 3.964 11 C 0.037 3.963 12 H 0.088 0.912 13 C -0.165 4.165 14 C -0.156 4.156 15 C -0.171 4.171 16 C -0.023 4.023 17 N -0.350 5.350 18 C 0.302 3.698 19 O -0.304 6.304 20 C -0.177 4.177 21 C -0.019 4.019 22 N -0.188 5.188 23 C 0.012 3.988 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.141 4.141 27 C -0.105 4.105 28 C -0.109 4.109 29 C -0.030 4.030 30 H 0.066 0.934 31 H 0.188 0.812 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.181 0.819 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.207 -2.732 11.091 24.088 hybrid contribution -0.002 0.815 0.131 0.826 sum 21.205 -1.917 11.222 24.068 Atomic orbital electron populations 1.69692 1.04977 1.25315 1.59101 1.24555 0.95104 0.96759 1.03218 0.86569 0.79250 0.85582 0.77305 1.21506 1.22082 1.20816 1.19014 0.80760 0.94392 1.39812 0.89483 1.42644 1.03879 1.01742 1.88396 1.20919 0.86152 0.90287 0.99062 1.21595 0.96056 0.93407 0.85286 0.91151 1.21895 0.94649 0.97332 1.02644 1.21506 0.96149 1.00934 0.96965 1.21980 0.99703 0.97209 0.98218 1.22083 0.80750 0.97370 1.02141 1.47777 1.05985 1.63140 1.18071 1.18059 0.86364 0.82467 0.82927 1.91231 1.14826 1.50171 1.74155 1.21184 1.00084 1.00872 0.95556 1.23251 0.91027 0.89610 0.97965 1.67957 1.27299 1.24908 0.98610 1.18975 0.93595 0.94352 0.91855 1.20792 1.00440 0.99427 0.90942 1.20934 0.96404 0.97569 0.96932 1.20916 0.97397 0.96403 0.99411 1.21087 0.99011 0.99249 0.91103 1.18821 0.98775 0.98440 0.94845 1.21887 0.95003 0.95944 0.90210 0.93436 0.81211 0.95652 0.93182 0.91345 0.90604 0.91853 0.91803 0.91538 0.91083 0.91418 0.89659 0.81912 0.84732 0.85320 0.85423 0.84917 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.11 13.97 55.49 0.78 -30.34 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 3 Si 0.88 23.95 27.74 -169.99 -4.71 19.24 16 4 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 5 H -0.29 -8.13 7.11 56.52 0.40 -7.73 16 6 H -0.28 -7.41 6.52 56.52 0.37 -7.04 16 7 C -0.21 -6.26 10.19 -15.06 -0.15 -6.42 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.72 -18.17 3.04 -59.91 -0.18 -18.35 16 10 C 0.16 3.30 4.87 -4.04 -0.02 3.28 16 11 C 0.14 2.14 2.92 -67.60 -0.20 1.94 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.13 -1.47 5.36 -26.61 -0.14 -1.61 16 14 C -0.12 -1.08 5.88 -26.69 -0.16 -1.24 16 15 C -0.13 -1.20 6.10 -26.39 -0.16 -1.36 16 16 C 0.10 1.08 4.84 -3.48 -0.02 1.06 16 17 N -0.61 -9.05 2.97 -166.09 -0.49 -9.55 16 18 C 0.52 9.29 6.74 -12.37 -0.08 9.21 16 19 O -0.44 -9.87 10.72 5.31 0.06 -9.81 16 20 C -0.17 -2.72 5.20 -104.83 -0.55 -3.27 16 21 C 0.15 2.23 8.51 -17.10 -0.15 2.08 16 22 N -0.48 -7.03 10.30 -10.67 -0.11 -7.14 16 23 C 0.13 1.85 6.61 -84.79 -0.56 1.29 16 24 C -0.10 -1.08 9.97 -39.48 -0.39 -1.48 16 25 C -0.10 -0.89 9.94 -39.92 -0.40 -1.29 16 26 C -0.12 -1.13 9.96 -39.92 -0.40 -1.52 16 27 C -0.09 -0.94 9.77 -39.47 -0.39 -1.32 16 28 C -0.11 -1.46 5.74 -106.81 -0.61 -2.07 16 29 C 0.00 -0.06 9.51 -38.43 -0.37 -0.42 16 30 H 0.26 8.09 8.31 -40.82 -0.34 7.75 16 31 H 0.36 8.95 4.95 -40.82 -0.20 8.75 16 32 H 0.03 0.52 8.13 -51.93 -0.42 0.09 16 33 H 0.05 1.11 6.29 -51.93 -0.33 0.78 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.09 0.90 4.63 -51.93 -0.24 0.66 16 42 H 0.16 2.03 6.30 -52.49 -0.33 1.70 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.74 369.10 -10.54 -47.29 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.61 Total: 6.40 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -4.83 Total: -3.30 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.01 Total: -65.37 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.71 Total: 19.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.74 -10.54 -47.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265684032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.385 kcal (2) G-P(sol) polarization free energy of solvation -36.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds