Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48504 * 109.46772 * 270.00198 * 3 2 1 5 5 H 1.48500 * 109.46913 * 29.99675 * 3 2 1 6 6 H 1.48495 * 109.47435 * 149.99916 * 3 2 1 7 7 C 1.38821 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99436 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99852 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47476 * 175.33300 * 10 9 7 12 12 H 1.09001 * 109.58280 * 309.12970 * 11 10 9 13 13 C 1.53191 * 109.58975 * 188.70115 * 11 10 9 14 14 C 1.53045 * 109.31184 * 185.57572 * 13 11 10 15 15 C 1.53039 * 109.53443 * 61.36513 * 14 13 11 16 16 C 1.53624 * 109.24370 * 298.50419 * 15 14 13 17 17 N 1.46925 * 109.58552 * 69.40518 * 11 10 9 18 18 C 1.34773 * 120.63167 * 353.38011 * 17 11 10 19 19 O 1.21561 * 120.00290 * 6.46036 * 18 17 11 20 20 C 1.47760 * 119.99729 * 186.45764 * 18 17 11 21 21 C 1.40601 * 120.26993 * 37.73481 * 20 18 17 22 22 N 1.30800 * 121.53997 * 179.97438 * 21 20 18 23 23 C 1.33822 * 121.71894 * 359.97438 * 22 21 20 24 24 C 1.40529 * 120.82373 * 180.02562 * 23 22 21 25 25 C 1.36134 * 119.81430 * 179.97438 * 24 23 22 26 26 C 1.39350 * 121.08990 * 0.02562 * 25 24 23 27 27 C 1.36141 * 120.83210 * 0.22987 * 26 25 24 28 28 C 1.40540 * 119.61390 * 359.50111 * 27 26 25 29 29 C 1.39013 * 120.26815 * 217.70516 * 20 18 17 30 30 H 0.97000 * 120.00205 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00366 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47620 * 55.33278 * 10 9 7 33 33 H 1.09005 * 109.47353 * 295.32988 * 10 9 7 34 34 H 1.08997 * 109.49480 * 305.52575 * 13 11 10 35 35 H 1.09001 * 109.49564 * 65.62315 * 13 11 10 36 36 H 1.08996 * 109.45663 * 181.38815 * 14 13 11 37 37 H 1.08998 * 109.45981 * 301.34266 * 14 13 11 38 38 H 1.08993 * 109.50200 * 58.59033 * 15 14 13 39 39 H 1.09004 * 109.49099 * 178.64949 * 15 14 13 40 40 H 1.08994 * 109.74504 * 295.12558 * 16 15 14 41 41 H 1.08995 * 109.66264 * 174.54995 * 16 15 14 42 42 H 1.07993 * 119.22673 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.09263 * 359.95622 * 24 23 22 44 44 H 1.07997 * 119.45870 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.58004 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.18892 * 179.72154 * 27 26 25 47 47 H 1.07995 * 121.02035 * 0.02795 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.6123 -2.1936 -0.1157 12 1 5.7957 -1.5228 -0.9550 13 6 6.3626 -3.5113 -0.3340 14 6 7.8696 -3.2454 -0.3108 15 6 8.2690 -2.6827 1.0552 16 6 7.5399 -1.3505 1.2869 17 7 6.0966 -1.5735 1.1252 18 6 5.2330 -1.2111 2.0943 19 8 4.0563 -1.5013 1.9995 20 6 5.7164 -0.4611 3.2720 21 6 6.7109 0.5221 3.1268 22 7 7.1566 1.2011 4.1521 23 6 6.6893 0.9954 5.3890 24 6 7.1813 1.7362 6.4771 25 6 6.6908 1.5105 7.7268 26 6 5.7040 0.5523 7.9502 27 6 5.2058 -0.1890 6.9228 28 6 5.6850 0.0214 5.6184 29 6 5.1911 -0.7214 4.5325 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3621 0.0007 32 1 3.7880 -3.0776 -0.8444 33 1 3.9127 -3.0055 0.9298 34 1 6.1046 -4.2125 0.4596 35 1 6.0825 -3.9338 -1.2989 36 1 8.4055 -4.1774 -0.4905 37 1 8.1233 -2.5252 -1.0885 38 1 7.9932 -3.3918 1.8356 39 1 9.3460 -2.5162 1.0792 40 1 7.8795 -0.6135 0.5592 41 1 7.7434 -0.9917 2.2957 42 1 7.1163 0.7212 2.1458 43 1 7.9466 2.4823 6.3224 44 1 7.0734 2.0828 8.5589 45 1 5.3327 0.3930 8.9518 46 1 4.4443 -0.9319 7.1084 47 1 4.4265 -1.4710 4.6728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265684032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = 58.075871 kcal Electronic energy + Delta-G solvation = -30153.779500 eV Core-core repulsion = 26302.530088 eV Total energy + Delta-G solvation = -3851.249413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.26076 -41.19545 -38.38497 -38.04760 -36.51199 -34.58404 -34.00882 -33.75292 -32.09731 -31.37948 -31.06188 -27.99526 -26.22291 -25.69894 -24.87346 -24.04420 -23.14806 -22.98685 -21.82880 -20.63199 -19.81604 -19.12309 -18.57877 -17.75796 -16.96420 -16.83556 -16.70430 -16.19400 -15.79927 -15.71894 -15.46097 -15.39979 -15.10283 -15.06555 -14.88162 -14.55957 -14.30572 -14.23735 -14.13096 -13.79875 -13.75609 -13.41864 -12.93203 -12.91787 -12.70824 -12.62174 -12.42844 -12.29462 -12.05563 -11.86877 -11.75851 -11.63374 -11.51745 -11.40056 -11.03678 -10.81364 -10.07696 -9.79896 -9.60675 -9.31318 -8.95165 -7.98354 -5.21073 -0.79791 -0.43684 0.83310 1.26001 1.31658 1.37181 1.57454 1.93665 2.15023 2.47757 2.98221 3.13961 3.33507 3.40550 3.52656 3.63267 3.65443 3.77235 3.83238 3.91376 3.99997 4.07308 4.18877 4.27022 4.29487 4.30935 4.35819 4.40062 4.56159 4.66465 4.67907 4.78612 4.84997 4.91110 4.96194 5.01799 5.02613 5.10366 5.13915 5.23918 5.30056 5.31917 5.39355 5.42923 5.50307 5.73510 5.78784 5.82318 6.24940 6.44996 6.68861 7.13596 7.31517 7.92783 8.10736 9.25295 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.004809 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.675264 B = 5821.436006 C = 7884.889717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.993 5.993 2 C -0.072 4.072 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.193 4.193 8 H 0.049 0.951 9 N -0.724 5.724 10 C 0.163 3.837 11 C 0.144 3.856 12 H 0.079 0.921 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.523 3.477 19 O -0.502 6.502 20 C -0.194 4.194 21 C 0.152 3.848 22 N -0.487 5.487 23 C 0.113 3.887 24 C -0.113 4.113 25 C -0.081 4.081 26 C -0.111 4.111 27 C -0.102 4.102 28 C -0.123 4.123 29 C -0.011 4.011 30 H 0.253 0.747 31 H 0.356 0.644 32 H 0.024 0.976 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.181 0.819 43 H 0.149 0.851 44 H 0.168 0.832 45 H 0.163 0.837 46 H 0.145 0.855 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.831 -1.945 12.774 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C -0.261 4.261 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.325 4.325 8 H 0.067 0.933 9 N -0.367 5.367 10 C 0.037 3.963 11 C 0.041 3.959 12 H 0.097 0.903 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.166 4.166 16 C -0.029 4.029 17 N -0.341 5.341 18 C 0.309 3.691 19 O -0.376 6.376 20 C -0.199 4.199 21 C -0.021 4.021 22 N -0.195 5.195 23 C -0.007 4.007 24 C -0.131 4.131 25 C -0.101 4.101 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.125 4.125 29 C -0.037 4.037 30 H 0.062 0.938 31 H 0.189 0.811 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.197 0.803 43 H 0.167 0.833 44 H 0.186 0.814 45 H 0.181 0.819 46 H 0.163 0.837 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 25.667 -1.556 12.706 28.682 hybrid contribution -1.240 0.336 -0.088 1.288 sum 24.427 -1.220 12.618 27.521 Atomic orbital electron populations 1.69874 1.06812 1.25925 1.62000 1.25277 0.95964 1.00445 1.04451 0.85437 0.77961 0.80623 0.77888 1.19850 1.22846 1.19745 1.18966 0.83026 0.92873 1.37643 0.93289 1.42541 1.02078 1.03428 1.88698 1.20957 0.89525 0.88227 0.97583 1.21527 0.92873 0.95786 0.85706 0.90316 1.21864 0.96405 0.94724 1.02857 1.21500 0.93711 1.02382 0.97328 1.21972 1.01108 0.95626 0.97846 1.22420 0.78025 0.99316 1.03115 1.47935 1.07642 1.61600 1.16972 1.18499 0.85927 0.81224 0.83476 1.91211 1.17301 1.53052 1.75998 1.21089 1.01717 1.02176 0.94955 1.23386 0.90704 0.89222 0.98777 1.67994 1.27540 1.24885 0.99047 1.19437 0.93934 0.94935 0.92426 1.21077 1.01278 0.99799 0.90991 1.21439 0.94862 0.96565 0.97189 1.21398 0.96204 0.94861 1.00407 1.21355 0.99780 1.00369 0.90539 1.19012 0.99281 0.98621 0.95559 1.22002 0.94754 0.96080 0.90906 0.93845 0.81124 0.95857 0.95408 0.92333 0.89525 0.89778 0.90569 0.92520 0.88115 0.89171 0.89409 0.80259 0.83283 0.81408 0.81901 0.83700 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.80 13.97 21.65 0.30 -68.49 16 2 C -0.07 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.95 51.21 27.74 68.60 1.90 53.11 16 4 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -16.42 7.11 99.48 0.71 -15.72 16 6 H -0.27 -13.95 6.52 99.48 0.65 -13.30 16 7 C -0.19 -12.19 10.19 84.04 0.86 -11.33 16 8 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 9 N -0.72 -37.71 3.04 -343.46 -1.05 -38.75 16 10 C 0.16 6.90 4.87 86.38 0.42 7.32 16 11 C 0.14 4.33 2.92 44.98 0.13 4.46 16 12 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 13 C -0.12 -2.60 5.36 30.67 0.16 -2.43 16 14 C -0.11 -1.65 5.88 30.62 0.18 -1.47 16 15 C -0.13 -1.88 6.10 30.82 0.19 -1.70 16 16 C 0.09 1.78 4.84 86.51 0.42 2.20 16 17 N -0.61 -17.57 2.97 -797.67 -2.37 -19.94 16 18 C 0.52 19.31 6.74 86.76 0.58 19.90 16 19 O -0.50 -24.09 10.72 -3.91 -0.04 -24.13 16 20 C -0.19 -6.28 5.20 -20.00 -0.10 -6.39 16 21 C 0.15 4.28 8.51 85.42 0.73 5.00 16 22 N -0.49 -13.70 10.30 -187.68 -1.93 -15.64 16 23 C 0.11 3.00 6.61 40.27 0.27 3.27 16 24 C -0.11 -2.20 9.97 22.34 0.22 -1.97 16 25 C -0.08 -1.12 9.94 22.05 0.22 -0.90 16 26 C -0.11 -1.61 9.96 22.05 0.22 -1.39 16 27 C -0.10 -2.06 9.77 22.34 0.22 -1.84 16 28 C -0.12 -3.29 5.74 -21.28 -0.12 -3.42 16 29 C -0.01 -0.34 9.51 23.02 0.22 -0.12 16 30 H 0.25 16.72 8.31 -92.71 -0.77 15.95 16 31 H 0.36 18.18 4.95 -92.71 -0.46 17.72 16 32 H 0.02 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.03 1.32 6.29 -2.38 -0.01 1.31 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 41 H 0.09 1.70 4.63 -2.39 -0.01 1.69 16 42 H 0.18 4.19 6.30 -2.91 -0.02 4.17 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 45 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 46 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 47 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -86.39 369.10 2.57 -83.83 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.47 Total: 24.99 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.28 Total: 5.02 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -5.04 Total: -142.82 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.13 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 1.90 Total: 53.11 kcal Total: -86.39 2.57 -83.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265684032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.902 kcal (2) G-P(sol) polarization free energy of solvation -86.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds