Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34769 * 125.64834 * 181.02187 * 15 14 13 17 17 O 1.21281 * 120.00366 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00133 * 0.03689 * 16 15 14 19 19 C 1.50695 * 109.47296 * 180.02562 * 18 16 15 20 20 C 1.39364 * 119.46629 * 90.00306 * 19 18 16 21 21 C 1.36133 * 120.86525 * 179.97438 * 20 19 18 22 22 C 1.40434 * 119.61790 * 359.97438 * 21 20 19 23 23 C 1.40765 * 121.37375 * 180.02562 * 22 21 20 24 24 C 1.36575 * 118.15239 * 179.97438 * 23 22 21 25 25 C 1.39337 * 119.92933 * 359.97438 * 24 23 22 26 26 N 1.31086 * 121.74886 * 0.02633 * 25 24 23 27 27 C 1.33673 * 121.32342 * 359.94701 * 26 25 24 28 28 C 1.36083 * 119.46853 * 269.72995 * 19 18 16 29 29 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 35 35 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 36 36 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 37 37 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 38 38 H 1.09000 * 109.47139 * 300.00287 * 18 16 15 39 39 H 1.08999 * 109.46677 * 60.00287 * 18 16 15 40 40 H 1.07998 * 119.56619 * 359.97438 * 20 19 18 41 41 H 1.08003 * 120.19581 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.92748 * 359.96275 * 23 22 21 43 43 H 1.07996 * 120.03742 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.12257 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.11924 * 359.97438 * 28 19 18 46 46 H 1.09001 * 110.36548 * 217.02965 * 29 15 14 47 47 H 1.09001 * 110.46206 * 94.75830 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8558 -8.4807 0.2109 17 8 1.6333 -8.9519 -0.5919 18 6 -0.1391 -9.3720 0.9087 19 6 0.0400 -10.7916 0.4359 20 6 0.9216 -11.6332 1.1117 21 6 1.1049 -12.9207 0.7094 22 6 0.3965 -13.4085 -0.4007 23 6 0.5572 -14.7335 -0.8481 24 6 -0.1650 -15.1390 -1.9341 25 6 -1.0310 -14.2483 -2.5651 26 7 -1.1781 -13.0151 -2.1456 27 6 -0.5015 -12.5553 -1.0884 28 6 -0.6659 -11.2327 -0.6407 29 6 1.7979 -6.1779 -0.1284 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 1.0704 -4.7171 2.1844 35 1 -0.5161 -4.3409 1.4355 36 1 -1.0402 -6.5905 1.1288 37 1 0.1510 -6.8532 2.4312 38 1 0.0234 -9.3248 1.9855 39 1 -1.1506 -9.0370 0.6789 40 1 1.4665 -11.2590 1.9657 41 1 1.7906 -13.5636 1.2414 42 1 1.2329 -15.4106 -0.3467 43 1 -0.0655 -16.1491 -2.3029 44 1 -1.5954 -14.5826 -3.4230 45 1 -1.3486 -10.5689 -1.1501 46 1 1.9720 -6.4192 -1.1770 47 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265990278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = 30.154296 kcal Electronic energy + Delta-G solvation = -27531.432674 eV Core-core repulsion = 23678.972491 eV Total energy + Delta-G solvation = -3852.460183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18805 -40.14113 -38.16974 -37.17580 -34.95519 -33.98790 -32.72098 -32.08135 -30.45824 -30.18869 -29.22723 -28.03388 -25.16987 -24.37408 -23.47485 -22.75223 -22.56681 -22.32800 -20.17706 -19.42189 -18.18350 -17.41461 -17.33463 -17.19413 -17.07024 -16.37170 -15.48175 -15.04328 -14.81546 -14.70932 -14.47444 -14.41674 -14.21496 -13.77367 -13.73194 -13.38104 -13.35469 -13.24402 -12.88604 -12.80728 -12.57903 -12.21606 -11.93672 -11.80878 -11.78952 -11.69876 -11.02976 -10.86478 -10.83210 -10.68835 -10.53131 -10.43221 -10.00767 -9.96626 -9.81070 -9.19780 -8.98864 -8.90375 -8.70765 -8.54532 -7.03031 -6.12496 -3.12320 0.08441 0.48351 1.68918 2.50359 2.52460 2.96939 3.51198 3.54650 3.72054 3.80125 3.91663 4.21783 4.30188 4.38568 4.46042 4.53153 4.63285 4.64604 4.65297 4.75002 4.86400 4.89562 4.98036 5.06839 5.12423 5.20391 5.23143 5.36357 5.46714 5.52517 5.58913 5.60716 5.64660 5.76291 5.81201 5.90014 5.91748 5.92489 6.02180 6.10477 6.16090 6.21931 6.22226 6.31795 6.51880 6.62223 6.72696 7.42742 7.60548 7.79023 8.05454 8.73904 9.20487 10.06853 10.21538 11.36079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.001672 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.454021 B =16738.484709 C =16926.783411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.170 3.830 11 C -0.107 4.107 12 H 0.084 0.916 13 C -0.122 4.122 14 C 0.098 3.902 15 N -0.617 5.617 16 C 0.529 3.471 17 O -0.535 6.535 18 C -0.101 4.101 19 C -0.044 4.044 20 C -0.097 4.097 21 C -0.098 4.098 22 C -0.103 4.103 23 C -0.057 4.057 24 C -0.179 4.179 25 C 0.128 3.872 26 N -0.473 5.473 27 C 0.130 3.870 28 C -0.079 4.079 29 C 0.114 3.886 30 H 0.254 0.746 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.158 0.842 45 H 0.134 0.866 46 H 0.077 0.923 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -31.471 3.582 31.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.463 4.463 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.042 3.958 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.025 4.025 15 N -0.352 5.352 16 C 0.317 3.683 17 O -0.411 6.411 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.199 4.199 25 C -0.045 4.045 26 N -0.181 5.181 27 C 0.009 3.991 28 C -0.097 4.097 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.176 0.824 45 H 0.152 0.848 46 H 0.096 0.904 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.127 -29.474 2.774 29.681 hybrid contribution 0.516 -2.255 0.420 2.351 sum -1.611 -31.729 3.194 31.930 Atomic orbital electron populations 1.70896 1.06022 1.28330 1.53675 1.25784 0.97056 1.01000 1.00405 0.83236 0.74216 0.75566 0.75881 1.21019 1.22262 1.22253 1.20034 0.92072 0.85790 1.48433 0.91743 1.42306 1.04839 1.00803 1.90803 1.20482 0.92647 0.84374 0.98299 1.22593 0.98656 0.93916 0.97512 0.89796 1.22659 1.02020 0.93151 0.98108 1.22164 0.94096 0.93605 0.92632 1.48550 1.36787 1.06623 1.43216 1.20065 0.84785 0.80873 0.82600 1.90743 1.41614 1.73710 1.35083 1.20728 1.00426 0.91107 1.01856 1.19041 0.95959 0.94222 0.95389 1.20778 0.97246 0.93504 0.99921 1.20910 0.98979 0.96100 0.95665 1.18851 0.98992 0.94897 0.97726 1.21477 0.97137 0.94344 0.95386 1.21881 0.98796 1.01621 0.97615 1.22970 0.94836 0.88643 0.98051 1.68032 1.22482 1.15525 1.12039 1.18793 0.93806 0.94286 0.92232 1.20605 0.99966 0.93623 0.95533 1.22234 0.92742 0.86811 0.99090 0.93473 0.79996 0.95932 0.95861 0.90181 0.89673 0.91344 0.91373 0.87579 0.87552 0.85486 0.85111 0.84447 0.84562 0.82431 0.84780 0.90416 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.88 13.70 55.49 0.76 -28.12 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 25.79 29.92 -169.99 -5.09 20.70 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.30 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.33 -9.34 9.99 -15.06 -0.15 -9.49 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.74 -18.27 5.55 -59.91 -0.33 -18.60 16 10 C 0.17 3.32 5.71 -4.05 -0.02 3.30 16 11 C -0.11 -1.64 3.05 -88.47 -0.27 -1.91 16 12 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 13 C -0.12 -1.58 6.37 -24.90 -0.16 -1.74 16 14 C 0.10 1.00 6.49 -3.06 -0.02 0.98 16 15 N -0.62 -7.74 3.33 -170.52 -0.57 -8.31 16 16 C 0.53 6.88 7.84 -10.99 -0.09 6.80 16 17 O -0.53 -9.15 16.29 5.56 0.09 -9.06 16 18 C -0.10 -0.91 4.99 -29.04 -0.14 -1.06 16 19 C -0.04 -0.46 4.34 -104.98 -0.46 -0.91 16 20 C -0.10 -0.90 9.59 -39.92 -0.38 -1.28 16 21 C -0.10 -0.86 9.78 -39.51 -0.39 -1.25 16 22 C -0.10 -1.04 5.74 -106.80 -0.61 -1.66 16 23 C -0.06 -0.44 9.90 -39.23 -0.39 -0.82 16 24 C -0.18 -1.23 10.03 -39.77 -0.40 -1.62 16 25 C 0.13 1.09 11.15 -17.46 -0.19 0.90 16 26 N -0.47 -5.62 10.34 -10.98 -0.11 -5.73 16 27 C 0.13 1.57 6.60 -84.86 -0.56 1.01 16 28 C -0.08 -0.92 9.58 -39.47 -0.38 -1.30 16 29 C 0.11 1.61 6.38 -2.53 -0.02 1.59 16 30 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 31 H 0.37 9.13 6.50 -40.82 -0.27 8.87 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 34 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 47 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -36.43 391.71 -10.96 -47.39 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.90 Total: 5.69 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -4.72 Total: -9.86 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.25 Total: -60.77 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.43 -10.96 -47.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265990278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.548 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds