Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34769 * 125.64834 * 181.02187 * 15 14 13 17 17 O 1.21281 * 120.00366 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00133 * 0.03689 * 16 15 14 19 19 C 1.50695 * 109.47296 * 180.02562 * 18 16 15 20 20 C 1.39364 * 119.46629 * 90.00306 * 19 18 16 21 21 C 1.36133 * 120.86525 * 179.97438 * 20 19 18 22 22 C 1.40434 * 119.61790 * 359.97438 * 21 20 19 23 23 C 1.40765 * 121.37375 * 180.02562 * 22 21 20 24 24 C 1.36575 * 118.15239 * 179.97438 * 23 22 21 25 25 C 1.39337 * 119.92933 * 359.97438 * 24 23 22 26 26 N 1.31086 * 121.74886 * 0.02633 * 25 24 23 27 27 C 1.33673 * 121.32342 * 359.94701 * 26 25 24 28 28 C 1.36083 * 119.46853 * 269.72995 * 19 18 16 29 29 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 35 35 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 36 36 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 37 37 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 38 38 H 1.09000 * 109.47139 * 300.00287 * 18 16 15 39 39 H 1.08999 * 109.46677 * 60.00287 * 18 16 15 40 40 H 1.07998 * 119.56619 * 359.97438 * 20 19 18 41 41 H 1.08003 * 120.19581 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.92748 * 359.96275 * 23 22 21 43 43 H 1.07996 * 120.03742 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.12257 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.11924 * 359.97438 * 28 19 18 46 46 H 1.09001 * 110.36548 * 217.02965 * 29 15 14 47 47 H 1.09001 * 110.46206 * 94.75830 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8558 -8.4807 0.2109 17 8 1.6333 -8.9519 -0.5919 18 6 -0.1391 -9.3720 0.9087 19 6 0.0400 -10.7916 0.4359 20 6 0.9216 -11.6332 1.1117 21 6 1.1049 -12.9207 0.7094 22 6 0.3965 -13.4085 -0.4007 23 6 0.5572 -14.7335 -0.8481 24 6 -0.1650 -15.1390 -1.9341 25 6 -1.0310 -14.2483 -2.5651 26 7 -1.1781 -13.0151 -2.1456 27 6 -0.5015 -12.5553 -1.0884 28 6 -0.6659 -11.2327 -0.6407 29 6 1.7979 -6.1779 -0.1284 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 1.0704 -4.7171 2.1844 35 1 -0.5161 -4.3409 1.4355 36 1 -1.0402 -6.5905 1.1288 37 1 0.1510 -6.8532 2.4312 38 1 0.0234 -9.3248 1.9855 39 1 -1.1506 -9.0370 0.6789 40 1 1.4665 -11.2590 1.9657 41 1 1.7906 -13.5636 1.2414 42 1 1.2329 -15.4106 -0.3467 43 1 -0.0655 -16.1491 -2.3029 44 1 -1.5954 -14.5826 -3.4230 45 1 -1.3486 -10.5689 -1.1501 46 1 1.9720 -6.4192 -1.1770 47 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265990278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = 7.297347 kcal Electronic energy + Delta-G solvation = -27532.423826 eV Core-core repulsion = 23678.972491 eV Total energy + Delta-G solvation = -3853.451335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87441 -41.13604 -39.18328 -38.04535 -36.74425 -34.66116 -34.12227 -33.02695 -31.72124 -31.10052 -30.34408 -28.96621 -26.72732 -25.12856 -24.76439 -24.09548 -23.55031 -23.03682 -21.48098 -20.37540 -19.37780 -18.82898 -18.24492 -18.00183 -17.81195 -17.53287 -16.45055 -16.41623 -15.94155 -15.62302 -15.46769 -15.34943 -15.21933 -15.13376 -15.01013 -14.76543 -14.10425 -14.00616 -13.91665 -13.87042 -13.75147 -13.10917 -13.00922 -12.77590 -12.63261 -12.58549 -12.47973 -12.33122 -12.19720 -11.90113 -11.86276 -11.71418 -11.52264 -11.27522 -11.01812 -10.92920 -10.46922 -9.73742 -9.66771 -9.22954 -9.11857 -8.40296 -5.34306 -0.55254 -0.18143 1.01890 1.53961 1.59417 1.68971 1.75654 1.85595 2.10636 2.71029 3.10035 3.27949 3.31822 3.40014 3.57188 3.58480 3.65463 3.73150 3.84974 3.88987 4.01872 4.07591 4.11628 4.18212 4.23188 4.28607 4.31968 4.46885 4.51719 4.53339 4.57243 4.59644 4.72885 4.77141 4.84369 4.91375 4.98945 5.01183 5.04722 5.12791 5.14785 5.18652 5.31189 5.37839 5.47015 5.58025 5.60821 5.89030 6.45292 6.50196 6.95086 7.05809 7.09013 7.99278 8.09836 9.11937 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.001672 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.454021 B =16738.484709 C =16926.783411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.102 4.102 3 Si 1.128 2.872 4 H -0.292 1.292 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.338 4.338 8 H 0.065 0.935 9 N -0.752 5.752 10 C 0.170 3.830 11 C -0.099 4.099 12 H 0.073 0.927 13 C -0.118 4.118 14 C 0.103 3.897 15 N -0.617 5.617 16 C 0.527 3.473 17 O -0.583 6.583 18 C -0.092 4.092 19 C -0.049 4.049 20 C -0.113 4.113 21 C -0.094 4.094 22 C -0.124 4.124 23 C -0.059 4.059 24 C -0.176 4.176 25 C 0.120 3.880 26 N -0.517 5.517 27 C 0.100 3.900 28 C -0.108 4.108 29 C 0.120 3.880 30 H 0.245 0.755 31 H 0.363 0.637 32 H 0.014 0.986 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.183 0.817 45 H 0.123 0.877 46 H 0.061 0.939 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -33.608 5.170 34.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.293 4.293 3 Si 0.952 3.048 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.470 4.470 8 H 0.083 0.917 9 N -0.397 5.397 10 C 0.043 3.957 11 C -0.118 4.118 12 H 0.091 0.909 13 C -0.156 4.156 14 C -0.019 4.019 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.463 6.463 18 C -0.131 4.131 19 C -0.051 4.051 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.085 4.085 24 C -0.196 4.196 25 C -0.052 4.052 26 N -0.226 5.226 27 C -0.021 4.021 28 C -0.127 4.127 29 C -0.004 4.004 30 H 0.056 0.944 31 H 0.195 0.805 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.189 0.811 43 H 0.191 0.809 44 H 0.200 0.800 45 H 0.141 0.859 46 H 0.080 0.920 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.460 -31.647 4.383 31.983 hybrid contribution 0.342 -1.715 -0.149 1.755 sum -1.118 -33.362 4.234 33.648 Atomic orbital electron populations 1.70997 1.07072 1.27948 1.56059 1.27191 0.97150 1.04560 1.00393 0.82629 0.73398 0.71642 0.77115 1.21792 1.20223 1.20670 1.20390 0.92396 0.87181 1.47011 0.91724 1.42466 1.04860 1.01676 1.90716 1.20578 0.93332 0.84025 0.97750 1.22359 0.97648 0.92826 0.99005 0.90855 1.22613 1.01442 0.95431 0.96110 1.22290 0.94581 0.91142 0.93839 1.48610 1.36655 1.06489 1.43298 1.20763 0.84683 0.80926 0.81930 1.90722 1.43777 1.74536 1.37304 1.20784 0.99891 0.89303 1.03154 1.19254 0.95793 0.95047 0.95038 1.21094 0.97390 0.93836 1.00725 1.21316 0.98561 0.96389 0.95019 1.19188 0.99074 0.96038 0.98321 1.21929 0.97331 0.93695 0.95501 1.22281 0.97478 1.02855 0.96954 1.23577 0.94985 0.88050 0.98556 1.68014 1.24075 1.17420 1.13072 1.19077 0.94991 0.94946 0.93054 1.20705 1.01208 0.94049 0.96721 1.22019 0.93229 0.86605 0.98515 0.94447 0.80466 0.96850 0.95460 0.90448 0.90116 0.89235 0.88027 0.84174 0.85719 0.83377 0.82055 0.81112 0.80883 0.79989 0.85868 0.92040 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.30 13.70 21.65 0.30 -60.00 16 2 C -0.10 -5.87 5.50 84.86 0.47 -5.41 16 3 Si 1.13 51.72 29.92 68.60 2.05 53.78 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.34 -19.11 9.99 84.03 0.84 -18.27 16 8 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 9 N -0.75 -37.57 5.55 -343.47 -1.90 -39.47 16 10 C 0.17 6.72 5.71 86.38 0.49 7.21 16 11 C -0.10 -3.02 3.05 -9.40 -0.03 -3.05 16 12 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 13 C -0.12 -2.92 6.37 31.78 0.20 -2.71 16 14 C 0.10 1.82 6.49 86.73 0.56 2.39 16 15 N -0.62 -14.62 3.33 -811.79 -2.70 -17.32 16 16 C 0.53 13.22 7.84 87.66 0.69 13.91 16 17 O -0.58 -20.24 16.29 -3.03 -0.05 -20.29 16 18 C -0.09 -1.48 4.99 29.10 0.15 -1.34 16 19 C -0.05 -1.00 4.34 -20.10 -0.09 -1.09 16 20 C -0.11 -1.94 9.59 22.05 0.21 -1.73 16 21 C -0.09 -1.50 9.78 22.31 0.22 -1.29 16 22 C -0.12 -2.42 5.74 -21.28 -0.12 -2.54 16 23 C -0.06 -0.76 9.90 22.50 0.22 -0.54 16 24 C -0.18 -2.02 10.03 22.15 0.22 -1.79 16 25 C 0.12 1.97 11.15 85.07 0.95 2.92 16 26 N -0.52 -12.74 10.34 -188.64 -1.95 -14.70 16 27 C 0.10 2.48 6.60 40.29 0.27 2.75 16 28 C -0.11 -2.65 9.58 22.34 0.21 -2.43 16 29 C 0.12 3.37 6.38 86.85 0.55 3.93 16 30 H 0.25 15.02 6.77 -92.71 -0.63 14.40 16 31 H 0.36 18.49 6.50 -92.71 -0.60 17.89 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 34 H 0.08 1.97 7.91 -2.39 -0.02 1.95 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.12 1.55 8.07 -2.39 -0.02 1.53 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 46 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 47 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 Total: -1.00 -82.32 391.71 2.27 -80.05 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.51 Total: 27.04 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 6.02 Total: -9.09 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -6.26 Total: -131.49 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.78 kcal Total: -82.32 2.27 -80.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265990278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.344 kcal (2) G-P(sol) polarization free energy of solvation -82.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds