Wall clock time and date at job start Sat Apr 11 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 119.99735 * 2 1 4 4 H 1.48505 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47391 * 299.99398 * 3 2 1 6 6 H 1.48499 * 109.47521 * 59.99774 * 3 2 1 7 7 C 1.38947 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00203 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00206 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99699 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46984 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99739 * 185.37860 * 13 12 10 15 15 H 1.09002 * 109.47526 * 33.83715 * 14 13 12 16 16 C 1.53002 * 109.47206 * 153.83494 * 14 13 12 17 17 N 1.46502 * 109.47183 * 305.00233 * 16 14 13 18 18 C 1.34779 * 119.99996 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99851 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99995 * 179.97438 * 18 17 16 21 21 H 1.09002 * 110.49282 * 319.30386 * 20 18 17 22 22 C 1.54111 * 110.54769 * 82.00218 * 20 18 17 23 23 N 1.47389 * 103.69882 * 118.55804 * 22 20 18 24 24 C 1.33948 * 109.21456 * 0.11592 * 23 22 20 25 25 O 1.21591 * 123.03992 * 179.97438 * 24 23 22 26 26 N 1.33950 * 113.91561 * 359.91907 * 24 23 22 27 27 C 1.52997 * 109.47452 * 273.83783 * 14 13 12 28 28 C 1.53005 * 117.49893 * 243.26477 * 27 14 13 29 29 C 1.52997 * 117.50492 * 174.64257 * 27 14 13 30 30 H 0.97004 * 120.00443 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00428 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47199 * 59.99720 * 12 10 9 33 33 H 1.09002 * 109.46212 * 299.99423 * 12 10 9 34 34 H 1.00896 * 111.00207 * 61.42249 * 13 12 10 35 35 H 1.09006 * 109.46800 * 65.00070 * 16 14 13 36 36 H 1.09005 * 109.47727 * 184.99994 * 16 14 13 37 37 H 0.96996 * 120.00139 * 359.97438 * 17 16 14 38 38 H 1.08998 * 110.54591 * 237.19055 * 22 20 18 39 39 H 1.08995 * 110.54522 * 0.02562 * 22 20 18 40 40 H 0.97003 * 125.37167 * 180.02562 * 23 22 20 41 41 H 0.96998 * 125.41022 * 179.97438 * 26 24 23 42 42 H 1.08998 * 115.54627 * 28.96554 * 27 14 13 43 43 H 1.08999 * 117.49658 * 359.97438 * 28 27 14 44 44 H 1.08999 * 117.49794 * 145.01961 * 28 27 14 45 45 H 1.08993 * 117.50201 * 214.98023 * 29 27 14 46 46 H 1.09005 * 117.49435 * 0.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3235 -2.3905 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0007 14 6 1.5030 -7.2668 -0.1284 15 1 0.6228 -7.1426 -0.7593 16 6 2.4438 -8.2936 -0.7621 17 7 2.9495 -7.7726 -2.0346 18 6 3.8013 -8.5103 -2.7740 19 8 4.1488 -9.6056 -2.3861 20 6 4.3210 -7.9747 -4.0831 21 1 3.5263 -7.4676 -4.6304 22 6 5.5073 -7.0204 -3.8444 23 7 6.6271 -7.6734 -4.5459 24 6 6.1934 -8.8101 -5.1063 25 8 6.9138 -9.5492 -5.7492 26 7 4.8947 -9.0595 -4.8934 27 6 1.0731 -7.7554 1.2563 28 6 1.6844 -9.0623 1.7655 29 6 0.2198 -9.0235 1.3246 30 1 -0.4851 0.8400 -0.0004 31 1 0.3534 -2.3907 -0.0002 32 1 0.6176 -4.9205 -0.8902 33 1 0.6170 -4.9208 0.8898 34 1 2.7754 -5.9615 0.8283 35 1 3.2801 -8.4838 -0.0893 36 1 1.9017 -9.2224 -0.9395 37 1 2.6712 -6.8968 -2.3450 38 1 5.3027 -6.0404 -4.2753 39 1 5.7207 -6.9345 -2.7790 40 1 7.5340 -7.3328 -4.5950 41 1 4.4096 -9.8326 -5.2218 42 1 0.8728 -6.9739 1.9892 43 1 2.3925 -9.5742 1.1139 44 1 1.8864 -9.1407 2.8338 45 1 -0.5416 -9.0764 2.1027 46 1 -0.0349 -9.5100 0.3830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266426092.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:57 Heat of formation + Delta-G solvation = -53.953743 kcal Electronic energy + Delta-G solvation = -29354.164247 eV Core-core repulsion = 25087.207602 eV Total energy + Delta-G solvation = -4266.956644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46994 -39.74324 -38.76802 -38.00433 -36.34800 -35.17176 -34.28457 -33.70211 -33.19484 -31.31636 -30.22470 -28.65026 -26.28703 -24.70076 -23.79084 -23.42173 -22.50975 -21.96108 -20.74294 -20.09525 -19.38090 -18.20288 -17.97991 -17.72184 -17.01582 -16.47701 -16.06714 -15.62648 -15.61609 -15.35675 -15.24903 -14.73520 -14.57814 -14.38226 -14.31556 -14.02394 -13.88926 -13.69911 -13.45253 -13.16583 -12.77927 -12.42949 -12.33937 -11.96369 -11.78364 -11.65102 -11.60867 -11.49848 -11.14111 -10.64534 -10.54717 -10.41311 -10.37142 -10.30683 -10.24069 -9.61176 -9.60325 -9.18243 -9.08780 -8.63884 -8.21735 -8.05339 -6.50397 -3.91452 2.25640 2.53494 2.82308 3.09832 3.12267 3.21486 3.27702 3.47563 3.77624 3.80592 3.97791 4.02618 4.20741 4.34769 4.51622 4.57365 4.61905 4.77854 4.80963 5.00004 5.06913 5.08039 5.15493 5.22441 5.35483 5.39610 5.41406 5.50379 5.66860 5.67227 5.71609 5.80771 5.89070 5.93265 6.15502 6.27394 6.76184 6.92233 6.98446 7.13607 7.37089 7.43658 7.47092 7.97260 8.01094 8.42615 8.51645 9.09412 9.45092 9.95829 10.67178 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.002858 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.350694 B = 9795.779319 C =12569.946145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.049 3.951 13 N -0.658 5.658 14 C 0.104 3.896 15 H 0.088 0.912 16 C 0.132 3.868 17 N -0.704 5.704 18 C 0.500 3.500 19 O -0.533 6.533 20 C 0.104 3.896 21 H 0.117 0.883 22 C 0.104 3.896 23 N -0.738 5.738 24 C 0.706 3.294 25 O -0.589 6.589 26 N -0.715 5.715 27 C -0.183 4.183 28 C -0.182 4.182 29 C -0.175 4.175 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.355 0.645 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.433 0.567 41 H 0.433 0.567 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -14.458 -2.931 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.084 4.084 13 N -0.289 5.289 14 C -0.008 4.008 15 H 0.106 0.894 16 C 0.008 3.992 17 N -0.357 5.357 18 C 0.283 3.717 19 O -0.409 6.409 20 C -0.007 4.007 21 H 0.134 0.866 22 C -0.022 4.022 23 N -0.402 5.402 24 C 0.405 3.595 25 O -0.467 6.467 26 N -0.377 5.377 27 C -0.203 4.203 28 C -0.219 4.219 29 C -0.213 4.213 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.275 0.725 41 H 0.275 0.725 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.411 -15.374 -3.643 15.805 hybrid contribution -0.915 1.216 0.939 1.788 sum -0.504 -14.158 -2.705 14.423 Atomic orbital electron populations 1.69609 1.05959 1.28147 1.50494 1.25259 0.95619 0.99760 0.97245 0.85819 0.79732 0.81151 0.77764 1.19189 1.20708 1.20772 1.19732 0.93371 0.82180 1.47619 0.87854 1.41883 1.09203 1.04653 1.64243 1.19775 0.88392 0.84610 0.84727 1.90532 1.13658 1.87037 1.55379 1.21741 0.94239 0.91004 1.01392 1.60153 1.21713 0.99523 1.47551 1.21393 0.95926 0.89740 0.93695 0.89358 1.21498 0.97589 0.95563 0.84556 1.45794 1.46536 1.21591 1.21752 1.20691 0.79265 0.85679 0.86028 1.90741 1.57835 1.20706 1.71617 1.21840 0.98356 0.89088 0.91397 0.86559 1.22360 0.83948 0.96089 0.99755 1.45143 1.13131 1.24389 1.57504 1.15848 0.82295 0.81783 0.79553 1.90995 1.57911 1.51505 1.46244 1.44794 1.09978 1.26644 1.56286 1.23153 1.05598 0.92299 0.99282 1.23149 0.96455 1.00371 1.01920 1.22942 0.94124 1.00968 1.03244 0.91868 0.77511 0.89570 0.93645 0.82519 0.90904 0.91294 0.75184 0.88126 0.88962 0.72547 0.72516 0.87287 0.87881 0.88843 0.88840 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.30 13.05 55.50 0.72 -22.57 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -7.81 9.68 -14.94 -0.14 -7.96 16 8 H 0.10 2.85 7.16 -52.49 -0.38 2.47 16 9 N -0.56 -13.01 5.29 -10.96 -0.06 -13.07 16 10 C 0.44 9.09 7.83 -10.98 -0.09 9.01 16 11 O -0.58 -14.07 15.90 5.55 0.09 -13.99 16 12 C 0.05 0.69 6.00 -4.97 -0.03 0.66 16 13 N -0.66 -8.01 5.23 -108.00 -0.56 -8.57 16 14 C 0.10 0.95 2.51 -67.72 -0.17 0.78 16 15 H 0.09 0.76 7.70 -51.93 -0.40 0.36 16 16 C 0.13 1.25 3.95 -4.04 -0.02 1.23 16 17 N -0.70 -6.47 5.39 -60.29 -0.32 -6.79 16 18 C 0.50 5.27 6.94 -10.99 -0.08 5.19 16 19 O -0.53 -7.74 16.58 5.56 0.09 -7.65 16 20 C 0.10 0.86 4.16 -68.20 -0.28 0.57 16 21 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 22 C 0.10 0.83 7.72 -2.98 -0.02 0.81 16 23 N -0.74 -7.22 6.39 -64.46 -0.41 -7.63 16 24 C 0.71 9.14 8.92 -88.40 -0.79 8.35 16 25 O -0.59 -10.05 18.05 5.29 0.10 -9.95 16 26 N -0.72 -7.38 5.62 -59.33 -0.33 -7.71 16 27 C -0.18 -1.59 5.64 -90.62 -0.51 -2.10 16 28 C -0.18 -1.49 9.49 -26.73 -0.25 -1.75 16 29 C -0.18 -1.34 10.01 -26.73 -0.27 -1.60 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 31 H 0.39 8.69 7.90 -40.82 -0.32 8.36 16 32 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 33 H 0.05 0.60 7.92 -51.93 -0.41 0.19 16 34 H 0.35 4.80 8.36 -39.29 -0.33 4.47 16 35 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 36 H 0.07 0.63 7.61 -51.93 -0.39 0.24 16 37 H 0.41 3.46 8.14 -40.82 -0.33 3.13 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.79 7.72 -51.93 -0.40 0.39 16 40 H 0.43 3.50 8.96 -40.82 -0.37 3.13 16 41 H 0.43 4.02 8.96 -40.82 -0.37 3.66 16 42 H 0.11 1.04 7.93 -51.93 -0.41 0.63 16 43 H 0.10 0.87 5.80 -51.93 -0.30 0.57 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.67 8.01 -51.93 -0.42 0.26 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -34.78 388.56 -9.03 -43.80 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -6.42 Total: 19.61 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: -2.75 Total: 13.67 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.97 Total: -66.35 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 0.28 Total: -31.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.78 -9.03 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266426092.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.151 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds