Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 119.99735 * 2 1 4 4 H 1.48505 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47391 * 299.99398 * 3 2 1 6 6 H 1.48499 * 109.47521 * 59.99774 * 3 2 1 7 7 C 1.38947 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00203 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00206 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99699 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46984 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99739 * 185.37860 * 13 12 10 15 15 H 1.09002 * 109.47526 * 33.83715 * 14 13 12 16 16 C 1.53002 * 109.47206 * 153.83494 * 14 13 12 17 17 N 1.46502 * 109.47183 * 305.00233 * 16 14 13 18 18 C 1.34779 * 119.99996 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99851 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99995 * 179.97438 * 18 17 16 21 21 H 1.09002 * 110.49282 * 319.30386 * 20 18 17 22 22 C 1.54111 * 110.54769 * 82.00218 * 20 18 17 23 23 N 1.47389 * 103.69882 * 118.55804 * 22 20 18 24 24 C 1.33948 * 109.21456 * 0.11592 * 23 22 20 25 25 O 1.21591 * 123.03992 * 179.97438 * 24 23 22 26 26 N 1.33950 * 113.91561 * 359.91907 * 24 23 22 27 27 C 1.52997 * 109.47452 * 273.83783 * 14 13 12 28 28 C 1.53005 * 117.49893 * 243.26477 * 27 14 13 29 29 C 1.52997 * 117.50492 * 174.64257 * 27 14 13 30 30 H 0.97004 * 120.00443 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00428 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47199 * 59.99720 * 12 10 9 33 33 H 1.09002 * 109.46212 * 299.99423 * 12 10 9 34 34 H 1.00896 * 111.00207 * 61.42249 * 13 12 10 35 35 H 1.09006 * 109.46800 * 65.00070 * 16 14 13 36 36 H 1.09005 * 109.47727 * 184.99994 * 16 14 13 37 37 H 0.96996 * 120.00139 * 359.97438 * 17 16 14 38 38 H 1.08998 * 110.54591 * 237.19055 * 22 20 18 39 39 H 1.08995 * 110.54522 * 0.02562 * 22 20 18 40 40 H 0.97003 * 125.37167 * 180.02562 * 23 22 20 41 41 H 0.96998 * 125.41022 * 179.97438 * 26 24 23 42 42 H 1.08998 * 115.54627 * 28.96554 * 27 14 13 43 43 H 1.08999 * 117.49658 * 359.97438 * 28 27 14 44 44 H 1.08999 * 117.49794 * 145.01961 * 28 27 14 45 45 H 1.08993 * 117.50201 * 214.98023 * 29 27 14 46 46 H 1.09005 * 117.49435 * 0.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3235 -2.3905 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9795 0.0007 14 6 1.5030 -7.2668 -0.1284 15 1 0.6228 -7.1426 -0.7593 16 6 2.4438 -8.2936 -0.7621 17 7 2.9495 -7.7726 -2.0346 18 6 3.8013 -8.5103 -2.7740 19 8 4.1488 -9.6056 -2.3861 20 6 4.3210 -7.9747 -4.0831 21 1 3.5263 -7.4676 -4.6304 22 6 5.5073 -7.0204 -3.8444 23 7 6.6271 -7.6734 -4.5459 24 6 6.1934 -8.8101 -5.1063 25 8 6.9138 -9.5492 -5.7492 26 7 4.8947 -9.0595 -4.8934 27 6 1.0731 -7.7554 1.2563 28 6 1.6844 -9.0623 1.7655 29 6 0.2198 -9.0235 1.3246 30 1 -0.4851 0.8400 -0.0004 31 1 0.3534 -2.3907 -0.0002 32 1 0.6176 -4.9205 -0.8902 33 1 0.6170 -4.9208 0.8898 34 1 2.7754 -5.9615 0.8283 35 1 3.2801 -8.4838 -0.0893 36 1 1.9017 -9.2224 -0.9395 37 1 2.6712 -6.8968 -2.3450 38 1 5.3027 -6.0404 -4.2753 39 1 5.7207 -6.9345 -2.7790 40 1 7.5340 -7.3328 -4.5950 41 1 4.4096 -9.8326 -5.2218 42 1 0.8728 -6.9739 1.9892 43 1 2.3925 -9.5742 1.1139 44 1 1.8864 -9.1407 2.8338 45 1 -0.5416 -9.0764 2.1027 46 1 -0.0349 -9.5100 0.3830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266426092.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -85.559673 kcal Electronic energy + Delta-G solvation = -29355.534783 eV Core-core repulsion = 25087.207602 eV Total energy + Delta-G solvation = -4268.327180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31864 -40.64471 -40.01693 -39.22298 -37.34658 -36.16178 -35.76584 -34.92384 -34.00482 -33.17261 -31.10767 -29.59499 -27.63864 -25.92364 -24.87339 -24.20537 -23.14875 -22.82941 -21.56251 -21.03859 -20.81249 -19.84116 -19.07940 -18.52362 -18.00721 -17.40148 -17.26435 -16.67959 -16.65508 -16.34264 -16.25574 -16.13762 -15.81322 -15.40362 -15.27368 -15.13420 -14.91624 -14.81828 -14.58542 -13.98045 -13.90692 -13.60795 -13.41541 -13.14870 -13.04691 -12.80981 -12.68613 -12.43303 -12.33617 -12.21477 -12.08634 -11.59574 -11.45008 -11.34557 -11.31578 -10.91877 -10.56915 -10.24651 -10.01628 -9.93607 -9.84682 -9.29866 -8.41468 -5.88622 1.39912 1.43880 1.46198 1.58679 1.71063 1.97590 2.15326 2.25441 2.32463 2.74453 3.02911 3.08176 3.27485 3.33193 3.55634 3.68958 3.78718 3.91103 3.99947 4.08906 4.15227 4.29195 4.36355 4.42326 4.50864 4.63202 4.67020 4.68643 4.73508 4.75863 4.84514 4.95527 5.05354 5.23193 5.28815 5.47411 5.47817 5.90062 5.92796 6.14270 6.19839 6.26179 6.38298 6.59665 6.67500 7.20461 7.21931 7.50825 7.66119 8.21232 8.75990 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.002858 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.350694 B = 9795.779319 C =12569.946145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.326 4.326 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.442 3.558 11 O -0.618 6.618 12 C 0.065 3.935 13 N -0.662 5.662 14 C 0.115 3.885 15 H 0.105 0.895 16 C 0.135 3.865 17 N -0.694 5.694 18 C 0.501 3.499 19 O -0.577 6.577 20 C 0.107 3.893 21 H 0.158 0.842 22 C 0.103 3.897 23 N -0.731 5.731 24 C 0.696 3.304 25 O -0.639 6.639 26 N -0.711 5.711 27 C -0.189 4.189 28 C -0.187 4.187 29 C -0.163 4.163 30 H 0.275 0.725 31 H 0.396 0.604 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.346 0.654 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.419 0.581 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.439 0.561 41 H 0.436 0.564 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 -14.082 -3.123 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.811 3.189 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.455 4.455 8 H 0.097 0.903 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.504 6.504 12 C -0.067 4.067 13 N -0.293 5.293 14 C 0.005 3.995 15 H 0.123 0.877 16 C 0.011 3.989 17 N -0.345 5.345 18 C 0.285 3.715 19 O -0.457 6.457 20 C -0.003 4.003 21 H 0.175 0.825 22 C -0.022 4.022 23 N -0.394 5.394 24 C 0.395 3.605 25 O -0.521 6.521 26 N -0.372 5.372 27 C -0.209 4.209 28 C -0.224 4.224 29 C -0.201 4.201 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.165 0.835 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.256 0.744 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.282 0.718 41 H 0.278 0.722 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.181 -14.965 -3.815 15.488 hybrid contribution -0.429 1.034 1.067 1.546 sum -1.609 -13.931 -2.748 14.290 Atomic orbital electron populations 1.69664 1.06731 1.28991 1.50930 1.25928 0.96424 1.02186 0.96703 0.84961 0.78222 0.77675 0.78071 1.19701 1.19828 1.20171 1.19651 0.92639 0.84042 1.49208 0.90259 1.41954 1.09316 1.04748 1.65438 1.20901 0.88261 0.86018 0.81838 1.90510 1.15738 1.87941 1.56220 1.21588 0.93808 0.87851 1.03468 1.60121 1.21681 1.00257 1.47234 1.21349 0.95959 0.87946 0.94291 0.87711 1.21457 0.97146 0.95958 0.84339 1.45744 1.45822 1.21591 1.21381 1.21061 0.78770 0.85047 0.86574 1.90730 1.59450 1.22718 1.72769 1.22092 0.99425 0.88399 0.90348 0.82484 1.22567 0.83019 0.97097 0.99486 1.45154 1.14019 1.23556 1.56644 1.16138 0.82786 0.82117 0.79495 1.90948 1.59313 1.53243 1.48579 1.44798 1.09260 1.27239 1.55866 1.23050 1.06597 0.92500 0.98747 1.23155 0.97110 1.00136 1.01978 1.23015 0.93707 0.99546 1.03809 0.91526 0.77072 0.86859 0.91904 0.83468 0.92485 0.90608 0.74367 0.85130 0.89588 0.71822 0.72164 0.87937 0.88325 0.88738 0.88144 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.07 13.05 21.66 0.28 -46.79 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 40.70 29.55 68.60 2.03 42.73 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.33 -17.10 9.68 84.04 0.81 -16.29 16 8 H 0.08 4.47 7.16 -2.91 -0.02 4.45 16 9 N -0.58 -26.44 5.29 -306.98 -1.62 -28.06 16 10 C 0.44 17.88 7.83 87.66 0.69 18.56 16 11 O -0.62 -29.80 15.90 -3.06 -0.05 -29.85 16 12 C 0.07 1.68 6.00 85.56 0.51 2.19 16 13 N -0.66 -14.71 5.23 -495.59 -2.59 -17.31 16 14 C 0.11 1.80 2.51 44.92 0.11 1.91 16 15 H 0.10 1.37 7.70 -2.39 -0.02 1.36 16 16 C 0.14 2.30 3.95 86.38 0.34 2.65 16 17 N -0.69 -11.22 5.39 -463.05 -2.49 -13.72 16 18 C 0.50 9.77 6.94 87.65 0.61 10.38 16 19 O -0.58 -16.49 16.58 -3.02 -0.05 -16.54 16 20 C 0.11 1.53 4.16 44.51 0.19 1.71 16 21 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 22 C 0.10 1.43 7.72 86.59 0.67 2.10 16 23 N -0.73 -13.64 6.39 -476.59 -3.04 -16.68 16 24 C 0.70 17.87 8.92 179.57 1.60 19.47 16 25 O -0.64 -22.35 18.05 -4.00 -0.07 -22.42 16 26 N -0.71 -14.00 5.62 -460.33 -2.58 -16.58 16 27 C -0.19 -2.88 5.64 -10.79 -0.06 -2.94 16 28 C -0.19 -2.79 9.49 30.60 0.29 -2.50 16 29 C -0.16 -2.08 10.01 30.59 0.31 -1.77 16 30 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.40 17.27 7.90 -92.70 -0.73 16.54 16 32 H 0.11 2.39 7.92 -2.39 -0.02 2.37 16 33 H 0.06 1.47 7.92 -2.39 -0.02 1.45 16 34 H 0.35 8.92 8.36 -89.70 -0.75 8.17 16 35 H 0.06 1.19 6.90 -2.38 -0.02 1.17 16 36 H 0.08 1.24 7.61 -2.38 -0.02 1.22 16 37 H 0.42 5.78 8.14 -92.71 -0.75 5.02 16 38 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.35 7.72 -2.39 -0.02 1.33 16 40 H 0.44 6.85 8.96 -92.71 -0.83 6.02 16 41 H 0.44 7.85 8.96 -92.71 -0.83 7.02 16 42 H 0.10 1.75 7.93 -2.39 -0.02 1.73 16 43 H 0.10 1.58 5.80 -2.39 -0.01 1.56 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.10 1.16 8.01 -2.38 -0.02 1.14 16 Total: -1.00 -76.96 388.56 -6.47 -83.43 By element: Atomic # 1 Polarization: 49.31 SS G_CDS: -2.81 Total: 46.50 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: 6.53 Total: 35.29 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -12.05 Total: -139.14 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -0.17 Total: -68.81 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -76.96 -6.47 -83.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266426092.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.127 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds