Wall clock time and date at job start Sat Apr 11 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38806 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00584 * 336.82996 * 7 2 1 9 9 N 1.36937 * 119.99807 * 156.82707 * 7 2 1 10 10 C 1.46502 * 120.00168 * 320.88808 * 9 7 2 11 11 C 1.53000 * 109.46854 * 269.99954 * 10 9 7 12 12 N 1.46502 * 109.46854 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99831 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99886 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00392 * 179.97438 * 13 12 11 16 16 C 1.50693 * 109.47812 * 179.97438 * 15 13 12 17 17 C 1.39361 * 119.46494 * 89.99706 * 16 15 13 18 18 C 1.36143 * 120.86225 * 179.97438 * 17 16 15 19 19 C 1.40419 * 119.61738 * 359.97438 * 18 17 16 20 20 C 1.40776 * 121.37130 * 180.02562 * 19 18 17 21 21 C 1.36576 * 118.14796 * 179.97438 * 20 19 18 22 22 C 1.39328 * 119.93768 * 0.02562 * 21 20 19 23 23 N 1.31088 * 121.74794 * 0.02562 * 22 21 20 24 24 C 1.33685 * 121.32322 * 359.95994 * 23 22 21 25 25 C 1.36077 * 119.46956 * 269.72777 * 16 15 13 26 26 C 1.46507 * 119.99859 * 140.88250 * 9 7 2 27 27 C 1.53000 * 117.49983 * 4.02349 * 26 9 7 28 28 C 1.52995 * 117.49823 * 295.39808 * 26 9 7 29 29 H 0.97006 * 119.99495 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46749 * 29.99680 * 10 9 7 31 31 H 1.09003 * 109.47099 * 149.99748 * 10 9 7 32 32 H 1.09008 * 109.46908 * 299.99541 * 11 10 9 33 33 H 1.08999 * 109.47343 * 59.99496 * 11 10 9 34 34 H 0.96998 * 119.99936 * 0.02562 * 12 11 10 35 35 H 1.09009 * 109.47040 * 300.00235 * 15 13 12 36 36 H 1.08999 * 109.47269 * 59.99590 * 15 13 12 37 37 H 1.07998 * 119.56634 * 359.95542 * 17 16 15 38 38 H 1.08002 * 120.18672 * 179.97438 * 18 17 16 39 39 H 1.08000 * 120.92734 * 359.96025 * 20 19 18 40 40 H 1.07998 * 120.03170 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.13183 * 180.02562 * 22 21 20 42 42 H 1.08010 * 120.12036 * 359.97438 * 25 16 15 43 43 H 1.09003 * 115.54478 * 149.72878 * 26 9 7 44 44 H 1.09004 * 117.49911 * 359.97438 * 27 26 9 45 45 H 1.08991 * 117.50014 * 145.02236 * 27 26 9 46 46 H 1.09007 * 117.49685 * 214.98173 * 28 26 9 47 47 H 1.08997 * 117.50336 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0102 -1.2021 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2967 -1.2502 -0.4661 10 6 3.6778 -0.4692 -1.6456 11 6 3.4608 -1.3096 -2.9056 12 7 3.8413 -0.5284 -4.0851 13 6 3.7340 -1.0693 -5.3148 14 8 3.3229 -2.2029 -5.4450 15 6 4.1249 -0.2657 -6.5282 16 6 3.9125 -1.0938 -7.7692 17 6 2.6811 -1.0496 -8.4203 18 6 2.4584 -1.7857 -9.5438 19 6 3.4822 -2.5999 -10.0543 20 6 3.2923 -3.3757 -11.2135 21 6 4.3330 -4.1436 -11.6525 22 6 5.5395 -4.1435 -10.9557 23 7 5.7124 -3.4205 -9.8760 24 6 4.7346 -2.6470 -9.3935 25 6 4.9278 -1.8684 -8.2390 26 6 4.2921 -2.0826 0.2142 27 6 3.8113 -2.9465 1.3819 28 6 4.6660 -1.7059 1.6492 29 1 -0.4850 0.8401 0.0004 30 1 3.0650 0.4306 -1.6990 31 1 4.7287 -0.1893 -1.5720 32 1 4.0737 -2.2095 -2.8521 33 1 2.4099 -1.5896 -2.9791 34 1 4.1711 0.3778 -3.9808 35 1 3.5111 0.6336 -6.5816 36 1 5.1754 0.0154 -6.4549 37 1 1.8932 -0.4236 -8.0284 38 1 1.4998 -1.7435 -10.0395 39 1 2.3499 -3.3642 -11.7409 40 1 4.2208 -4.7503 -12.5389 41 1 6.3540 -4.7552 -11.3146 42 1 5.8775 -1.8874 -7.7249 43 1 5.0795 -2.4877 -0.4213 44 1 2.7546 -2.8953 1.6442 45 1 4.2824 -3.9204 1.5147 46 1 5.6995 -1.8637 1.9579 47 1 4.1719 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266596572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:01 Heat of formation + Delta-G solvation = 47.576668 kcal Electronic energy + Delta-G solvation = -27833.507639 eV Core-core repulsion = 23981.802947 eV Total energy + Delta-G solvation = -3851.704692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82259 -40.72056 -39.06336 -38.19007 -36.36906 -34.96852 -34.62181 -33.42272 -32.89340 -31.09144 -30.05251 -28.37465 -26.18455 -25.04503 -24.31225 -23.52633 -23.06135 -22.90939 -21.62180 -21.36353 -18.91732 -18.63342 -17.99338 -17.84705 -17.76418 -17.41615 -17.24234 -16.48960 -16.38828 -15.56011 -15.43640 -15.36617 -15.30139 -15.08960 -14.81918 -14.64115 -14.35855 -14.15356 -13.90769 -13.81753 -13.55862 -13.39098 -12.95121 -12.70381 -12.61428 -12.51376 -12.43582 -12.28512 -12.10713 -11.84278 -11.73935 -11.50155 -11.32852 -11.05650 -10.92152 -10.62014 -10.45442 -10.06812 -9.64729 -9.20711 -8.68469 -8.22564 -5.64115 -0.53267 -0.16056 1.03972 1.26739 1.42563 1.54019 1.66270 1.86244 2.29380 2.40067 3.00871 3.13325 3.25940 3.30900 3.32314 3.61245 3.68364 3.90636 3.98472 4.04034 4.09884 4.13483 4.18409 4.24600 4.26639 4.32963 4.37978 4.48245 4.55238 4.58315 4.59202 4.62387 4.86483 4.91746 4.94565 5.01714 5.02646 5.06536 5.13189 5.14585 5.29228 5.39674 5.46485 5.50068 5.52872 5.62297 5.90942 5.92332 6.19284 6.59417 6.95219 6.96406 7.29806 7.58235 7.98218 8.96513 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.002205 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.253211 B =12695.433235 C =13407.857217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.019 4.019 3 Si 0.941 3.059 4 H -0.256 1.256 5 H -0.312 1.312 6 H -0.256 1.256 7 C -0.260 4.260 8 H 0.039 0.961 9 N -0.582 5.582 10 C 0.130 3.870 11 C 0.119 3.881 12 N -0.716 5.716 13 C 0.508 3.492 14 O -0.586 6.586 15 C -0.096 4.096 16 C -0.049 4.049 17 C -0.117 4.117 18 C -0.097 4.097 19 C -0.125 4.125 20 C -0.061 4.061 21 C -0.176 4.176 22 C 0.121 3.879 23 N -0.513 5.513 24 C 0.099 3.901 25 C -0.104 4.104 26 C 0.102 3.898 27 C -0.192 4.192 28 C -0.205 4.205 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.416 0.584 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.186 0.814 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -0.102 -23.448 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.216 4.216 3 Si 0.769 3.231 4 H -0.182 1.182 5 H -0.241 1.241 6 H -0.180 1.180 7 C -0.390 4.390 8 H 0.057 0.943 9 N -0.302 5.302 10 C 0.004 3.996 11 C -0.007 4.007 12 N -0.369 5.369 13 C 0.296 3.704 14 O -0.466 6.466 15 C -0.136 4.136 16 C -0.051 4.051 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.086 4.086 21 C -0.195 4.195 22 C -0.051 4.051 23 N -0.222 5.222 24 C -0.021 4.021 25 C -0.123 4.123 26 C -0.005 4.005 27 C -0.230 4.230 28 C -0.246 4.246 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.253 0.747 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.186 0.814 40 H 0.192 0.808 41 H 0.203 0.797 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.773 -0.747 -22.986 26.307 hybrid contribution -1.117 0.880 0.349 1.464 sum 11.656 0.133 -22.637 25.462 Atomic orbital electron populations 1.70032 1.07962 1.27644 1.53192 1.26186 0.95655 1.01558 0.98203 0.85924 0.79256 0.79489 0.78469 1.18181 1.24077 1.18016 1.18507 0.88023 0.93177 1.39255 0.94319 1.43610 1.06535 1.52973 1.27039 1.21436 0.99940 0.93461 0.84740 1.21727 0.98678 0.95366 0.84974 1.45908 1.66598 1.18932 1.05433 1.21191 0.77014 0.87060 0.85133 1.90724 1.47633 1.21322 1.86940 1.20823 1.06996 0.98436 0.87306 1.19256 0.93720 0.96862 0.95297 1.21109 0.96663 1.00082 0.95589 1.21285 0.98904 0.95002 0.96389 1.19178 0.95117 1.00352 0.98057 1.21914 1.00818 0.92725 0.93182 1.22278 0.93570 1.00908 1.02730 1.23597 0.98132 0.94035 0.89366 1.68021 1.32425 1.07677 1.14029 1.19087 0.90430 0.96447 0.96117 1.20716 1.00174 0.96207 0.95210 1.21530 0.94181 0.97287 0.87519 1.23049 0.99635 0.95513 1.04823 1.23339 0.99949 0.98084 1.03178 0.92736 0.93294 0.89628 0.92633 0.95289 0.74744 0.84512 0.84617 0.84024 0.82427 0.81364 0.80838 0.79729 0.85185 0.85782 0.91474 0.87161 0.86880 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 13.97 21.65 0.30 -58.05 16 2 C -0.02 -1.08 5.28 84.86 0.45 -0.63 16 3 Si 0.94 43.39 25.32 68.60 1.74 45.12 16 4 H -0.26 -10.50 6.52 99.48 0.65 -9.85 16 5 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.26 -14.40 8.93 84.03 0.75 -13.65 16 8 H 0.04 2.44 6.86 -2.91 -0.02 2.42 16 9 N -0.58 -26.17 2.38 -678.02 -1.61 -27.78 16 10 C 0.13 4.93 4.68 86.38 0.40 5.33 16 11 C 0.12 4.45 6.00 86.38 0.52 4.97 16 12 N -0.72 -20.24 5.56 -463.05 -2.57 -22.81 16 13 C 0.51 15.02 7.82 87.66 0.69 15.71 16 14 O -0.59 -23.78 16.03 -3.04 -0.05 -23.83 16 15 C -0.10 -1.82 5.80 29.10 0.17 -1.65 16 16 C -0.05 -1.16 4.34 -20.10 -0.09 -1.25 16 17 C -0.12 -2.55 9.59 22.05 0.21 -2.33 16 18 C -0.10 -1.95 9.77 22.31 0.22 -1.73 16 19 C -0.13 -2.80 5.74 -21.28 -0.12 -2.92 16 20 C -0.06 -0.94 9.90 22.50 0.22 -0.72 16 21 C -0.18 -2.31 10.03 22.14 0.22 -2.09 16 22 C 0.12 2.12 11.15 85.07 0.95 3.07 16 23 N -0.51 -13.21 10.34 -188.64 -1.95 -15.16 16 24 C 0.10 2.68 6.60 40.29 0.27 2.94 16 25 C -0.10 -2.75 9.58 22.34 0.21 -2.53 16 26 C 0.10 3.85 6.57 44.99 0.30 4.14 16 27 C -0.19 -7.16 9.80 30.60 0.30 -6.86 16 28 C -0.21 -7.21 10.34 30.59 0.32 -6.90 16 29 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 30 H 0.05 2.01 3.45 -2.39 -0.01 2.00 16 31 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 32 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.42 8.48 8.47 -92.71 -0.79 7.69 16 35 H 0.14 1.76 8.08 -2.38 -0.02 1.75 16 36 H 0.14 1.74 8.06 -2.39 -0.02 1.72 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 44 H 0.07 3.01 6.44 -2.38 -0.02 2.99 16 45 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -82.20 391.19 1.98 -80.22 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.15 Total: 29.40 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.98 Total: -7.11 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -5.83 Total: -123.81 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.83 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.74 Total: 45.12 kcal Total: -82.20 1.98 -80.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266596572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.798 kcal (2) G-P(sol) polarization free energy of solvation -82.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds