Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48496 * 109.47033 * 90.00541 * 3 2 1 5 5 H 1.48500 * 109.46773 * 209.99998 * 3 2 1 6 6 H 1.48497 * 109.47253 * 330.00032 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00034 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99698 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46707 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.49708 * 304.93342 * 11 10 9 13 13 C 1.53046 * 109.49692 * 184.83772 * 11 10 9 14 14 C 1.53038 * 109.54046 * 178.68187 * 13 11 10 15 15 C 1.53194 * 109.31278 * 61.36277 * 14 13 11 16 16 N 1.46928 * 108.77542 * 305.36913 * 15 14 13 17 17 C 1.34777 * 120.62804 * 233.58465 * 16 15 14 18 18 O 1.21562 * 120.00095 * 174.18677 * 17 16 15 19 19 C 1.47760 * 119.99851 * 354.19012 * 17 16 15 20 20 C 1.40596 * 120.27253 * 318.75166 * 19 17 16 21 21 N 1.30801 * 121.53831 * 179.71440 * 20 19 17 22 22 C 1.33815 * 121.71977 * 0.59895 * 21 20 19 23 23 C 1.40531 * 120.82290 * 179.70012 * 22 21 20 24 24 C 1.36127 * 119.81645 * 179.97438 * 23 22 21 25 25 C 1.39340 * 121.08988 * 0.02562 * 24 23 22 26 26 C 1.36141 * 120.83441 * 359.97368 * 25 24 23 27 27 C 1.40547 * 119.61647 * 0.04508 * 26 25 24 28 28 C 1.39015 * 120.26457 * 139.03167 * 19 17 16 29 29 C 1.46921 * 118.73883 * 53.60660 * 16 15 14 30 30 H 0.97005 * 120.00034 * 180.02562 * 1 2 3 31 31 H 0.96994 * 120.00075 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47319 * 299.99556 * 10 9 7 33 33 H 1.08995 * 109.47699 * 59.99703 * 10 9 7 34 34 H 1.09001 * 109.45706 * 298.70577 * 13 11 10 35 35 H 1.09001 * 109.45871 * 58.65447 * 13 11 10 36 36 H 1.09002 * 109.49701 * 301.41282 * 14 13 11 37 37 H 1.08995 * 109.52361 * 181.33421 * 14 13 11 38 38 H 1.08995 * 109.58433 * 185.57903 * 15 14 13 39 39 H 1.09005 * 109.70030 * 65.22304 * 15 14 13 40 40 H 1.08008 * 119.22851 * 0.02562 * 20 19 17 41 41 H 1.07995 * 120.08783 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.45563 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.58424 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.19308 * 180.02562 * 26 25 24 45 45 H 1.07996 * 121.01831 * 359.97438 * 28 19 17 46 46 H 1.09004 * 109.58401 * 186.60707 * 29 16 15 47 47 H 1.08993 * 109.70836 * 66.25167 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0027 11 6 1.0639 -4.8197 -0.0044 12 1 0.3799 -4.7148 0.8378 13 6 1.8245 -6.1422 0.1161 14 6 0.8291 -7.3042 0.1475 15 6 0.0307 -7.3230 -1.1598 16 7 -0.5869 -6.0043 -1.3556 17 6 -1.9128 -5.8921 -1.5704 18 8 -2.4287 -4.7928 -1.6256 19 6 -2.7392 -7.1054 -1.7386 20 6 -2.2636 -8.1867 -2.5010 21 7 -2.9719 -9.2746 -2.6615 22 6 -4.1878 -9.4089 -2.1192 23 6 -4.9352 -10.5838 -2.3090 24 6 -6.1699 -10.6987 -1.7473 25 6 -6.7115 -9.6673 -0.9829 26 6 -6.0185 -8.5138 -0.7763 27 6 -4.7408 -8.3604 -1.3415 28 6 -3.9956 -7.1846 -1.1490 29 6 0.2682 -4.8103 -1.3134 30 1 -0.4850 -0.8401 0.0004 31 1 0.3556 -2.3881 -0.0023 32 1 2.6847 -3.7137 -0.8928 33 1 2.6848 -3.7153 0.8871 34 1 2.4903 -6.2574 -0.7393 35 1 2.4110 -6.1414 1.0348 36 1 0.1473 -7.1765 0.9884 37 1 1.3698 -8.2442 0.2572 38 1 -0.7460 -8.0855 -1.1026 39 1 0.6971 -7.5419 -1.9942 40 1 -1.2886 -8.1195 -2.9608 41 1 -4.5311 -11.3931 -2.8988 42 1 -6.7390 -11.6043 -1.8966 43 1 -7.6936 -9.7842 -0.5489 44 1 -6.4480 -7.7212 -0.1817 45 1 -4.3872 -6.3674 -0.5616 46 1 -0.3519 -3.9150 -1.3577 47 1 0.9558 -4.8207 -2.1591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266811584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = 10.046396 kcal Electronic energy + Delta-G solvation = -28686.822561 eV Core-core repulsion = 24833.490434 eV Total energy + Delta-G solvation = -3853.332127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26478 -41.08261 -39.03621 -38.01900 -36.91897 -34.81323 -34.51098 -33.15807 -32.10970 -31.15535 -31.03820 -27.39476 -26.88000 -25.49384 -24.95237 -24.82939 -23.17792 -22.88481 -21.86431 -20.61115 -19.45131 -19.29844 -18.85175 -17.90297 -17.47234 -16.84848 -16.79426 -16.18743 -16.04797 -15.87453 -15.57965 -15.45113 -15.30633 -15.23600 -14.95175 -14.53828 -14.35074 -14.23147 -14.17008 -14.11850 -13.83204 -13.15144 -12.79878 -12.77821 -12.68899 -12.55619 -12.46789 -12.16135 -11.94326 -11.91903 -11.79716 -11.72780 -11.58810 -11.34216 -11.16318 -10.97208 -10.61619 -9.92616 -9.76258 -9.34633 -9.14628 -8.43056 -5.37093 -0.85697 -0.47329 0.79156 1.37038 1.55418 1.67509 1.69554 1.81604 1.98771 2.70040 2.95611 3.06799 3.28016 3.37741 3.48498 3.55472 3.59178 3.74716 3.77173 3.78260 3.86681 3.99373 4.02847 4.16644 4.19517 4.28817 4.32887 4.39107 4.49238 4.62640 4.63824 4.68922 4.72056 4.77263 4.81392 4.89903 4.93117 5.01171 5.03689 5.11835 5.24192 5.29635 5.35834 5.37183 5.40438 5.43172 5.55829 5.80524 6.19240 6.43559 6.66143 6.89892 7.05336 7.95408 8.08206 9.08225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.002380 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.602177 B =11763.735703 C =12771.125929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.111 4.111 3 Si 1.134 2.866 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.760 5.760 10 C 0.164 3.836 11 C -0.095 4.095 12 H 0.049 0.951 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.093 3.907 16 N -0.597 5.597 17 C 0.556 3.444 18 O -0.582 6.582 19 C -0.196 4.196 20 C 0.161 3.839 21 N -0.483 5.483 22 C 0.118 3.882 23 C -0.113 4.113 24 C -0.079 4.079 25 C -0.111 4.111 26 C -0.100 4.100 27 C -0.123 4.123 28 C -0.003 4.003 29 C 0.128 3.872 30 H 0.240 0.760 31 H 0.357 0.643 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.186 0.814 41 H 0.150 0.850 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.050 0.950 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -30.239 -2.657 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.301 4.301 3 Si 0.958 3.042 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.221 1.221 7 C -0.465 4.465 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.037 3.963 11 C -0.115 4.115 12 H 0.067 0.933 13 C -0.143 4.143 14 C -0.164 4.164 15 C -0.028 4.028 16 N -0.328 5.328 17 C 0.345 3.655 18 O -0.462 6.462 19 C -0.202 4.202 20 C -0.012 4.012 21 N -0.191 5.191 22 C -0.002 4.002 23 C -0.131 4.131 24 C -0.098 4.098 25 C -0.129 4.129 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.030 4.030 29 C 0.005 3.995 30 H 0.050 0.950 31 H 0.188 0.812 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.202 0.798 41 H 0.168 0.832 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.165 0.835 45 H 0.162 0.838 46 H 0.068 0.932 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.080 -28.836 -3.179 30.115 hybrid contribution -0.554 -0.096 0.602 0.824 sum -8.634 -28.932 -2.577 30.303 Atomic orbital electron populations 1.70960 1.07396 1.27704 1.56401 1.27380 0.97057 1.05116 1.00567 0.82563 0.73558 0.71138 0.76938 1.20957 1.19361 1.22110 1.20454 0.92491 0.87037 1.46546 0.91058 1.42711 1.04715 1.02360 1.90717 1.20781 0.93503 0.83781 0.98232 1.21561 0.96989 0.96473 0.96459 0.93286 1.21508 0.97689 0.91315 1.03767 1.21906 0.97991 0.99965 0.96574 1.22414 0.98316 0.82335 0.99751 1.48120 1.06091 1.09120 1.69501 1.18584 0.82329 0.88420 0.76157 1.90838 1.72923 1.29590 1.52894 1.20730 0.97139 0.96347 1.05942 1.23347 0.99364 0.86195 0.92318 1.68035 1.06224 1.24051 1.20745 1.19428 0.91411 0.94961 0.94403 1.21086 0.94924 0.95935 1.01198 1.21453 0.94369 1.00028 0.93983 1.21406 1.01334 0.92448 0.97690 1.21367 0.92096 0.99701 0.98680 1.18971 0.97460 0.94532 1.01481 1.22025 0.91085 0.96383 0.93460 1.21451 0.92749 0.87124 0.98132 0.94967 0.81153 0.95324 0.95618 0.89735 0.90550 0.92790 0.86826 0.88444 0.87825 0.79770 0.83225 0.81552 0.82020 0.83517 0.83781 0.93160 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.48 13.70 21.65 0.30 -65.18 16 2 C -0.11 -6.79 5.50 84.86 0.47 -6.32 16 3 Si 1.13 54.26 29.92 68.60 2.05 56.32 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.33 -19.75 9.99 84.03 0.84 -18.91 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.76 -41.03 5.37 -343.46 -1.85 -42.87 16 10 C 0.16 6.70 5.65 86.38 0.49 7.19 16 11 C -0.10 -3.11 2.38 -10.71 -0.03 -3.14 16 12 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 13 C -0.10 -2.27 5.17 30.62 0.16 -2.11 16 14 C -0.13 -2.14 6.08 30.67 0.19 -1.95 16 15 C 0.09 1.64 4.91 86.36 0.42 2.07 16 16 N -0.60 -16.81 2.97 -822.42 -2.44 -19.25 16 17 C 0.56 18.33 7.32 86.76 0.63 18.96 16 18 O -0.58 -25.58 16.36 -3.91 -0.06 -25.65 16 19 C -0.20 -5.09 5.09 -20.00 -0.10 -5.19 16 20 C 0.16 3.43 8.54 85.42 0.73 4.16 16 21 N -0.48 -10.55 10.30 -187.68 -1.93 -12.49 16 22 C 0.12 2.44 6.61 40.27 0.27 2.70 16 23 C -0.11 -1.63 9.97 22.34 0.22 -1.41 16 24 C -0.08 -0.73 9.94 22.04 0.22 -0.52 16 25 C -0.11 -1.09 9.96 22.05 0.22 -0.87 16 26 C -0.10 -1.48 9.77 22.34 0.22 -1.26 16 27 C -0.12 -2.53 5.74 -21.28 -0.12 -2.66 16 28 C 0.00 -0.08 9.54 23.02 0.22 0.14 16 29 C 0.13 4.40 5.53 86.36 0.48 4.88 16 30 H 0.24 16.40 6.78 -92.70 -0.63 15.78 16 31 H 0.36 20.68 5.72 -92.71 -0.53 20.15 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.55 4.79 -2.39 -0.01 1.54 16 39 H 0.10 1.31 8.12 -2.38 -0.02 1.29 16 40 H 0.19 2.98 6.66 -2.91 -0.02 2.96 16 41 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 46 H 0.05 2.26 6.20 -2.38 -0.01 2.25 16 47 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -84.59 379.15 2.18 -82.40 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.60 Total: 30.96 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.52 Total: -4.24 kcal Atomic # 7 Polarization: -133.87 SS G_CDS: -5.93 Total: -139.80 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.06 Total: -25.65 kcal Atomic # 14 Polarization: 54.26 SS G_CDS: 2.05 Total: 56.32 kcal Total: -84.59 2.18 -82.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.451 kcal (2) G-P(sol) polarization free energy of solvation -84.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds