Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00060 * 2 1 4 4 H 1.48503 * 109.46900 * 270.00003 * 3 2 1 5 5 H 1.48500 * 109.47181 * 29.99796 * 3 2 1 6 6 H 1.48499 * 109.47374 * 149.99603 * 3 2 1 7 7 C 1.38811 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00223 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99792 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99794 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47104 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.49703 * 55.06626 * 11 10 9 13 13 C 1.53042 * 109.52347 * 175.14063 * 11 10 9 14 14 C 1.53036 * 109.53654 * 181.33163 * 13 11 10 15 15 C 1.53622 * 109.24404 * 298.51114 * 14 13 11 16 16 N 1.46923 * 108.54001 * 54.86095 * 15 14 13 17 17 C 1.34779 * 120.63355 * 126.37126 * 16 15 14 18 18 O 1.21565 * 119.99821 * 3.52332 * 17 16 15 19 19 C 1.47762 * 119.99745 * 183.52680 * 17 16 15 20 20 C 1.40595 * 120.27256 * 309.32952 * 19 17 16 21 21 N 1.30795 * 121.54049 * 179.97438 * 20 19 17 22 22 C 1.33821 * 121.71780 * 0.02562 * 21 20 19 23 23 C 1.40525 * 120.81344 * 180.02562 * 22 21 20 24 24 C 1.36135 * 119.81351 * 179.97438 * 23 22 21 25 25 C 1.39333 * 121.08769 * 359.97438 * 24 23 22 26 26 C 1.36140 * 120.83581 * 0.02562 * 25 24 23 27 27 C 1.40541 * 119.62129 * 359.97438 * 26 25 24 28 28 C 1.39017 * 120.26253 * 129.31144 * 19 17 16 29 29 C 1.46937 * 118.73710 * 306.08798 * 16 15 14 30 30 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00265 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47255 * 59.99444 * 10 9 7 33 33 H 1.09007 * 109.46387 * 299.99613 * 10 9 7 34 34 H 1.09000 * 109.46109 * 301.35617 * 13 11 10 35 35 H 1.09006 * 109.45884 * 61.32524 * 13 11 10 36 36 H 1.08999 * 109.49998 * 58.59016 * 14 13 11 37 37 H 1.09004 * 109.49492 * 178.65124 * 14 13 11 38 38 H 1.08997 * 109.74312 * 295.12111 * 15 14 13 39 39 H 1.09000 * 109.66136 * 174.54953 * 15 14 13 40 40 H 1.08004 * 119.22934 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.09181 * 359.94695 * 23 22 21 42 42 H 1.08003 * 119.45656 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.58569 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.19588 * 179.97438 * 26 25 24 45 45 H 1.07995 * 121.01891 * 359.74606 * 28 19 17 46 46 H 1.08996 * 109.58224 * 173.65150 * 29 16 15 47 47 H 1.08993 * 109.58824 * 293.93555 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8666 -1.5462 0.8435 13 6 6.3819 -3.5108 0.1233 14 6 7.8857 -3.2288 0.1567 15 6 8.3026 -2.5482 -1.1559 16 7 7.4692 -1.3535 -1.3478 17 6 8.0347 -0.1490 -1.5624 18 8 9.2424 -0.0537 -1.6624 19 6 7.1865 1.0556 -1.6759 20 6 6.0855 1.0674 -2.5503 21 7 5.3181 2.1197 -2.6699 22 6 5.5415 3.2369 -1.9679 23 6 4.7044 4.3565 -2.1109 24 6 4.9501 5.4824 -1.3863 25 6 6.0224 5.5470 -0.4989 26 6 6.8557 4.4834 -0.3326 27 6 6.6320 3.3046 -1.0645 28 6 7.4705 2.1863 -0.9187 29 6 6.0075 -1.4979 -1.3077 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0422 -0.8890 33 1 3.8485 -3.0425 0.8909 34 1 6.0870 -4.0180 1.0419 35 1 6.1505 -4.1454 -0.7323 36 1 8.1145 -2.5741 0.9975 37 1 8.4294 -4.1671 0.2678 38 1 8.1548 -3.2346 -1.9897 39 1 9.3515 -2.2571 -1.1011 40 1 5.8680 0.1866 -3.1363 41 1 3.8686 4.3239 -2.7942 42 1 4.3033 6.3396 -1.5010 43 1 6.1952 6.4526 0.0635 44 1 7.6841 4.5450 0.3577 45 1 8.3071 2.2032 -0.2360 46 1 5.5418 -0.5134 -1.3531 47 1 5.6762 -2.0982 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266811585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = 36.419301 kcal Electronic energy + Delta-G solvation = -30111.791396 eV Core-core repulsion = 26259.602884 eV Total energy + Delta-G solvation = -3852.188512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21232 -40.01366 -37.86535 -37.04688 -34.99864 -33.63614 -33.09412 -32.11946 -30.77226 -30.21109 -30.07128 -26.07089 -25.86450 -24.64452 -23.92571 -22.81386 -22.22873 -21.34982 -20.65550 -19.56751 -18.42550 -17.89988 -17.47006 -16.93470 -16.46137 -15.76767 -15.30885 -14.95144 -14.74144 -14.63224 -14.40516 -14.26069 -14.13344 -13.88817 -13.71635 -13.39162 -13.24862 -12.98704 -12.91922 -12.70795 -12.48561 -11.96285 -11.90785 -11.68503 -11.61376 -11.44512 -11.18863 -10.94934 -10.80565 -10.67638 -10.57215 -10.34588 -10.19547 -10.10532 -9.59292 -9.47107 -8.90941 -8.88682 -8.71261 -8.40389 -7.25641 -5.78029 -3.14054 0.16968 0.54752 1.78813 2.41869 2.71360 2.98994 3.37937 3.41454 3.48655 3.97246 4.08488 4.30533 4.44153 4.59245 4.59608 4.65138 4.68091 4.77260 4.83083 4.91069 4.97354 4.97685 5.09713 5.21972 5.27653 5.32386 5.48702 5.53317 5.60312 5.61560 5.65254 5.71335 5.73135 5.75867 5.87912 5.90636 5.93643 5.96712 6.13604 6.16206 6.24719 6.26383 6.33271 6.40443 6.59193 6.66426 6.68858 7.21806 7.79174 7.96779 7.97125 8.40482 9.18766 9.91747 10.10090 11.40033 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007690 B = 0.006422 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3640.342976 B = 4359.271457 C = 7385.479361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.872 3.128 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.756 5.756 10 C 0.164 3.836 11 C -0.112 4.112 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.602 5.602 17 C 0.570 3.430 18 O -0.539 6.539 19 C -0.186 4.186 20 C 0.159 3.841 21 N -0.461 5.461 22 C 0.141 3.859 23 C -0.093 4.093 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.091 4.091 27 C -0.109 4.109 28 C -0.002 4.002 29 C 0.103 3.897 30 H 0.259 0.741 31 H 0.358 0.642 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.165 0.835 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.091 0.909 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.652 3.302 -2.019 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.702 3.298 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.036 3.964 11 C -0.131 4.131 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.010 4.010 16 N -0.334 5.334 17 C 0.358 3.642 18 O -0.417 6.417 19 C -0.191 4.191 20 C -0.015 4.015 21 N -0.167 5.167 22 C 0.020 3.980 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.135 4.135 26 C -0.110 4.110 27 C -0.111 4.111 28 C -0.029 4.029 29 C -0.019 4.019 30 H 0.069 0.931 31 H 0.191 0.809 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.182 0.818 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.109 0.891 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.295 3.353 -2.643 17.814 hybrid contribution 0.988 1.175 0.729 1.699 sum 18.282 4.527 -1.914 18.932 Atomic orbital electron populations 1.69695 1.05049 1.25767 1.57488 1.24627 0.95158 0.97032 1.01859 0.86721 0.78892 0.85370 0.78841 1.19319 1.21932 1.21046 1.19025 0.80527 0.94701 1.43258 0.89107 1.42741 1.04137 1.02021 1.91266 1.20644 0.87166 0.89457 0.99138 1.21751 0.97086 0.97028 0.97270 0.90816 1.21519 0.93851 0.96897 1.02739 1.21990 0.96918 1.00710 0.97480 1.21741 0.95949 0.85803 0.97539 1.48118 1.07888 1.07245 1.70142 1.18057 0.87178 0.82691 0.76306 1.90769 1.14106 1.85940 1.50876 1.20854 0.99514 0.95957 1.02785 1.23115 0.88022 0.96416 0.93906 1.68014 1.27111 0.99134 1.22482 1.19024 0.93217 0.92986 0.92776 1.20940 0.98886 0.91236 1.00055 1.20997 0.97260 0.98072 0.95367 1.20938 0.95087 0.98933 0.98589 1.21014 0.99688 0.91903 0.98370 1.18779 0.97199 0.95584 0.99527 1.21730 0.96314 0.89924 0.94915 1.22192 0.78026 1.02857 0.98838 0.93090 0.80897 0.95096 0.95007 0.91187 0.91380 0.91573 0.90617 0.91096 0.89052 0.81758 0.84285 0.84960 0.85219 0.84953 0.83628 0.89074 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.87 22.56 27.74 -169.99 -4.71 17.84 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 7 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.57 5.18 -59.91 -0.31 -17.88 16 10 C 0.16 2.96 5.66 -4.04 -0.02 2.94 16 11 C -0.11 -1.59 2.37 -90.50 -0.21 -1.81 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.23 5.17 -26.69 -0.14 -1.36 16 14 C -0.13 -1.28 6.10 -26.39 -0.16 -1.45 16 15 C 0.11 1.20 6.45 -3.49 -0.02 1.17 16 16 N -0.60 -7.83 2.97 -173.65 -0.52 -8.35 16 17 C 0.57 8.42 7.24 -12.37 -0.09 8.33 16 18 O -0.54 -9.08 16.47 5.31 0.09 -9.00 16 19 C -0.19 -2.77 5.01 -104.83 -0.52 -3.29 16 20 C 0.16 2.48 8.51 -17.10 -0.15 2.33 16 21 N -0.46 -8.07 10.30 -10.67 -0.11 -8.18 16 22 C 0.14 2.32 6.61 -84.79 -0.56 1.76 16 23 C -0.09 -1.36 9.97 -39.48 -0.39 -1.76 16 24 C -0.10 -1.14 9.94 -39.93 -0.40 -1.53 16 25 C -0.12 -1.25 9.96 -39.93 -0.40 -1.64 16 26 C -0.09 -1.05 9.77 -39.47 -0.39 -1.44 16 27 C -0.11 -1.58 5.74 -106.81 -0.61 -2.19 16 28 C 0.00 -0.03 9.63 -38.43 -0.37 -0.40 16 29 C 0.10 1.43 4.45 -3.71 -0.02 1.41 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.36 8.34 4.75 -40.82 -0.19 8.15 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.03 7.02 -51.93 -0.36 0.67 16 40 H 0.17 2.23 7.05 -52.48 -0.37 1.86 16 41 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.09 1.45 3.75 -51.93 -0.19 1.26 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -34.98 378.40 -10.42 -45.40 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.63 Total: 8.90 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.71 Total: -5.81 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.16 Total: -63.04 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.98 -10.42 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.820 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds