Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00060 * 2 1 4 4 H 1.48503 * 109.46900 * 270.00003 * 3 2 1 5 5 H 1.48500 * 109.47181 * 29.99796 * 3 2 1 6 6 H 1.48499 * 109.47374 * 149.99603 * 3 2 1 7 7 C 1.38811 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00223 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99792 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99794 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47104 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.49703 * 55.06626 * 11 10 9 13 13 C 1.53042 * 109.52347 * 175.14063 * 11 10 9 14 14 C 1.53036 * 109.53654 * 181.33163 * 13 11 10 15 15 C 1.53622 * 109.24404 * 298.51114 * 14 13 11 16 16 N 1.46923 * 108.54001 * 54.86095 * 15 14 13 17 17 C 1.34779 * 120.63355 * 126.37126 * 16 15 14 18 18 O 1.21565 * 119.99821 * 3.52332 * 17 16 15 19 19 C 1.47762 * 119.99745 * 183.52680 * 17 16 15 20 20 C 1.40595 * 120.27256 * 309.32952 * 19 17 16 21 21 N 1.30795 * 121.54049 * 179.97438 * 20 19 17 22 22 C 1.33821 * 121.71780 * 0.02562 * 21 20 19 23 23 C 1.40525 * 120.81344 * 180.02562 * 22 21 20 24 24 C 1.36135 * 119.81351 * 179.97438 * 23 22 21 25 25 C 1.39333 * 121.08769 * 359.97438 * 24 23 22 26 26 C 1.36140 * 120.83581 * 0.02562 * 25 24 23 27 27 C 1.40541 * 119.62129 * 359.97438 * 26 25 24 28 28 C 1.39017 * 120.26253 * 129.31144 * 19 17 16 29 29 C 1.46937 * 118.73710 * 306.08798 * 16 15 14 30 30 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00265 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47255 * 59.99444 * 10 9 7 33 33 H 1.09007 * 109.46387 * 299.99613 * 10 9 7 34 34 H 1.09000 * 109.46109 * 301.35617 * 13 11 10 35 35 H 1.09006 * 109.45884 * 61.32524 * 13 11 10 36 36 H 1.08999 * 109.49998 * 58.59016 * 14 13 11 37 37 H 1.09004 * 109.49492 * 178.65124 * 14 13 11 38 38 H 1.08997 * 109.74312 * 295.12111 * 15 14 13 39 39 H 1.09000 * 109.66136 * 174.54953 * 15 14 13 40 40 H 1.08004 * 119.22934 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.09181 * 359.94695 * 23 22 21 42 42 H 1.08003 * 119.45656 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.58569 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.19588 * 179.97438 * 26 25 24 45 45 H 1.07995 * 121.01891 * 359.74606 * 28 19 17 46 46 H 1.08996 * 109.58224 * 173.65150 * 29 16 15 47 47 H 1.08993 * 109.58824 * 293.93555 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8666 -1.5462 0.8435 13 6 6.3819 -3.5108 0.1233 14 6 7.8857 -3.2288 0.1567 15 6 8.3026 -2.5482 -1.1559 16 7 7.4692 -1.3535 -1.3478 17 6 8.0347 -0.1490 -1.5624 18 8 9.2424 -0.0537 -1.6624 19 6 7.1865 1.0556 -1.6759 20 6 6.0855 1.0674 -2.5503 21 7 5.3181 2.1197 -2.6699 22 6 5.5415 3.2369 -1.9679 23 6 4.7044 4.3565 -2.1109 24 6 4.9501 5.4824 -1.3863 25 6 6.0224 5.5470 -0.4989 26 6 6.8557 4.4834 -0.3326 27 6 6.6320 3.3046 -1.0645 28 6 7.4705 2.1863 -0.9187 29 6 6.0075 -1.4979 -1.3077 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0422 -0.8890 33 1 3.8485 -3.0425 0.8909 34 1 6.0870 -4.0180 1.0419 35 1 6.1505 -4.1454 -0.7323 36 1 8.1145 -2.5741 0.9975 37 1 8.4294 -4.1671 0.2678 38 1 8.1548 -3.2346 -1.9897 39 1 9.3515 -2.2571 -1.1011 40 1 5.8680 0.1866 -3.1363 41 1 3.8686 4.3239 -2.7942 42 1 4.3033 6.3396 -1.5010 43 1 6.1952 6.4526 0.0635 44 1 7.6841 4.5450 0.3577 45 1 8.3071 2.2032 -0.2360 46 1 5.5418 -0.5134 -1.3531 47 1 5.6762 -2.0982 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266811585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = 14.366975 kcal Electronic energy + Delta-G solvation = -30112.747656 eV Core-core repulsion = 26259.602884 eV Total energy + Delta-G solvation = -3853.144773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27100 -41.06223 -39.02574 -38.05771 -36.66345 -34.69602 -34.39193 -33.64054 -32.16668 -31.40732 -31.14422 -27.48834 -27.01727 -25.73867 -24.96772 -24.39222 -23.22834 -22.61337 -21.93292 -20.57679 -19.74235 -19.32624 -18.84778 -18.00299 -17.52110 -16.75868 -16.69936 -16.36631 -16.00605 -15.88392 -15.59197 -15.39943 -15.26135 -15.12788 -14.98630 -14.57123 -14.41613 -14.27119 -14.05177 -14.03994 -13.80569 -13.40986 -13.11217 -12.89299 -12.82228 -12.72533 -12.52906 -12.28499 -12.07849 -11.94212 -11.87471 -11.75429 -11.59841 -11.44763 -11.25413 -11.02345 -10.58567 -9.92701 -9.75213 -9.39709 -9.31810 -8.07327 -5.38628 -0.84301 -0.49148 0.76896 1.26846 1.32636 1.34325 1.38628 1.69744 1.96058 2.40874 2.92898 3.03461 3.23811 3.26181 3.45196 3.48729 3.55856 3.74570 3.78320 3.81292 3.89122 3.94819 4.06814 4.13336 4.21871 4.28222 4.34538 4.40991 4.53217 4.59524 4.63049 4.71465 4.75244 4.84116 4.88610 4.92771 4.94578 4.96217 5.05953 5.17504 5.25069 5.29173 5.31097 5.36003 5.44458 5.46748 5.73864 5.76069 6.12605 6.17377 6.69436 6.87513 7.03861 7.81261 7.96899 9.14084 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007690 B = 0.006422 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3640.342976 B = 4359.271457 C = 7385.479361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.054 4.054 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.226 4.226 8 H 0.066 0.934 9 N -0.759 5.759 10 C 0.160 3.840 11 C -0.101 4.101 12 H 0.061 0.939 13 C -0.106 4.106 14 C -0.123 4.123 15 C 0.106 3.894 16 N -0.595 5.595 17 C 0.573 3.427 18 O -0.564 6.564 19 C -0.201 4.201 20 C 0.153 3.847 21 N -0.498 5.498 22 C 0.111 3.889 23 C -0.132 4.132 24 C -0.083 4.083 25 C -0.114 4.114 26 C -0.090 4.090 27 C -0.126 4.126 28 C 0.000 4.000 29 C 0.107 3.893 30 H 0.257 0.743 31 H 0.359 0.641 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.172 0.828 41 H 0.129 0.871 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.070 0.930 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.274 3.761 -0.916 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.246 4.246 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.357 4.357 8 H 0.084 0.916 9 N -0.404 5.404 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.079 0.921 13 C -0.144 4.144 14 C -0.161 4.161 15 C -0.014 4.014 16 N -0.326 5.326 17 C 0.361 3.639 18 O -0.444 6.444 19 C -0.207 4.207 20 C -0.021 4.021 21 N -0.206 5.206 22 C -0.009 4.009 23 C -0.151 4.151 24 C -0.103 4.103 25 C -0.132 4.132 26 C -0.109 4.109 27 C -0.128 4.128 28 C -0.026 4.026 29 C -0.016 4.016 30 H 0.066 0.934 31 H 0.192 0.808 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.189 0.811 41 H 0.147 0.853 42 H 0.180 0.820 43 H 0.189 0.811 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.088 0.912 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.960 3.764 -1.534 20.370 hybrid contribution 0.165 0.996 0.401 1.086 sum 20.125 4.760 -1.133 20.711 Atomic orbital electron populations 1.69843 1.06686 1.26336 1.60064 1.25294 0.95881 1.00320 1.03135 0.85643 0.77696 0.81232 0.78601 1.19442 1.22530 1.19986 1.19061 0.82670 0.93495 1.40488 0.91637 1.42799 1.02570 1.04102 1.90944 1.20853 0.89369 0.87216 0.99197 1.21624 0.94548 0.98923 0.96970 0.92064 1.21508 0.94210 0.94893 1.03825 1.21944 0.96029 1.01790 0.96360 1.21986 0.95311 0.85153 0.99000 1.48126 1.07644 1.07553 1.69230 1.18020 0.86736 0.83066 0.76056 1.90751 1.14941 1.86293 1.52398 1.20902 0.99683 0.96629 1.03443 1.23253 0.88244 0.96352 0.94255 1.67969 1.28437 1.00191 1.23984 1.19406 0.94588 0.93178 0.93715 1.21098 0.99573 0.92424 1.02002 1.21454 0.97450 0.97664 0.93732 1.21440 0.93797 1.00072 0.97844 1.21468 1.00622 0.90838 0.97949 1.19059 0.96884 0.97003 0.99878 1.22053 0.96491 0.89455 0.94601 1.22086 0.78481 1.01925 0.99102 0.93431 0.80800 0.94385 0.94999 0.90443 0.89926 0.92468 0.87621 0.89084 0.89474 0.81094 0.85274 0.81958 0.81142 0.81651 0.81475 0.91157 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.38 13.97 21.65 0.30 -63.08 16 2 C -0.05 -3.27 5.50 84.86 0.47 -2.80 16 3 Si 0.94 48.15 27.74 68.60 1.90 50.05 16 4 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 6 H -0.27 -13.34 6.52 99.48 0.65 -12.69 16 7 C -0.23 -12.89 10.47 84.03 0.88 -12.01 16 8 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 9 N -0.76 -35.09 5.18 -343.44 -1.78 -36.87 16 10 C 0.16 5.61 5.66 86.38 0.49 6.10 16 11 C -0.10 -2.70 2.37 -10.72 -0.03 -2.72 16 12 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 13 C -0.11 -1.99 5.17 30.62 0.16 -1.83 16 14 C -0.12 -1.97 6.10 30.82 0.19 -1.78 16 15 C 0.11 1.99 6.45 86.51 0.56 2.55 16 16 N -0.59 -14.53 2.97 -821.58 -2.44 -16.97 16 17 C 0.57 16.46 7.24 86.76 0.63 17.09 16 18 O -0.56 -18.50 16.47 -3.92 -0.06 -18.56 16 19 C -0.20 -5.95 5.01 -20.00 -0.10 -6.05 16 20 C 0.15 4.86 8.51 85.42 0.73 5.59 16 21 N -0.50 -18.02 10.30 -187.69 -1.93 -19.96 16 22 C 0.11 3.70 6.61 40.27 0.27 3.97 16 23 C -0.13 -3.89 9.97 22.34 0.22 -3.67 16 24 C -0.08 -1.76 9.94 22.04 0.22 -1.54 16 25 C -0.11 -2.00 9.96 22.04 0.22 -1.78 16 26 C -0.09 -1.82 9.77 22.34 0.22 -1.60 16 27 C -0.13 -3.52 5.74 -21.28 -0.12 -3.65 16 28 C 0.00 0.00 9.63 23.02 0.22 0.23 16 29 C 0.11 2.81 4.45 86.36 0.38 3.20 16 30 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.36 16.59 4.75 -92.71 -0.44 16.15 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.77 7.02 -2.39 -0.02 1.76 16 40 H 0.17 4.83 7.05 -2.91 -0.02 4.80 16 41 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 44 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 46 H 0.07 2.22 3.75 -2.39 -0.01 2.21 16 47 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -78.56 378.40 2.08 -76.48 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.49 Total: 29.62 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.60 Total: -0.72 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -5.85 Total: -136.87 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.06 Total: -18.56 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.90 Total: 50.05 kcal Total: -78.56 2.08 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.852 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds