Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47534 * 270.00490 * 3 2 1 5 5 H 1.48505 * 109.47081 * 30.00695 * 3 2 1 6 6 H 1.48500 * 109.47104 * 150.00180 * 3 2 1 7 7 C 1.38815 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99627 * 359.97438 * 7 2 1 9 9 N 1.36928 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.46510 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47064 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49577 * 304.93268 * 11 10 9 13 13 C 1.53045 * 109.51912 * 184.85763 * 11 10 9 14 14 C 1.53071 * 109.65707 * 178.73209 * 13 11 10 15 15 C 1.53199 * 109.29484 * 61.14941 * 14 13 11 16 16 N 1.46922 * 108.89409 * 305.57846 * 15 14 13 17 17 C 1.34778 * 120.63146 * 233.51473 * 16 15 14 18 18 O 1.21551 * 120.00028 * 174.44559 * 17 16 15 19 19 C 1.47874 * 120.00066 * 354.44286 * 17 16 15 20 20 C 1.40580 * 119.70536 * 324.35228 * 19 17 16 21 21 C 1.35815 * 120.73315 * 179.73107 * 20 19 17 22 22 C 1.40541 * 119.98165 * 0.52364 * 21 20 19 23 23 C 1.40821 * 121.12756 * 179.73945 * 22 21 20 24 24 C 1.36555 * 118.20165 * 180.02562 * 23 22 21 25 25 C 1.39417 * 119.93411 * 359.97438 * 24 23 22 26 26 N 1.31025 * 121.71693 * 0.02562 * 25 24 23 27 27 C 1.33740 * 121.34943 * 359.96084 * 26 25 24 28 28 C 1.38403 * 119.70977 * 144.62436 * 19 17 16 29 29 C 1.46927 * 118.73734 * 53.53629 * 16 15 14 30 30 H 0.96997 * 119.99775 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00500 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46544 * 59.99932 * 10 9 7 33 33 H 1.08990 * 109.46865 * 300.00513 * 10 9 7 34 34 H 1.09001 * 109.45770 * 298.68318 * 13 11 10 35 35 H 1.08997 * 109.46257 * 58.66168 * 13 11 10 36 36 H 1.09005 * 109.39273 * 301.27865 * 14 13 11 37 37 H 1.08994 * 109.62947 * 181.16534 * 14 13 11 38 38 H 1.08999 * 109.58779 * 185.72128 * 15 14 13 39 39 H 1.09000 * 109.58459 * 65.44081 * 15 14 13 40 40 H 1.08001 * 119.63146 * 359.97438 * 20 19 17 41 41 H 1.07999 * 120.00462 * 180.27954 * 21 20 19 42 42 H 1.08006 * 120.90212 * 359.97438 * 23 22 21 43 43 H 1.07995 * 120.03651 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.14108 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.22792 * 0.02562 * 28 19 17 46 46 H 1.09008 * 109.58753 * 66.17802 * 29 16 15 47 47 H 1.08998 * 109.58525 * 186.45634 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 1 5.8665 -1.5463 -0.8434 13 6 6.3819 -3.5109 -0.1232 14 6 7.8867 -3.2323 -0.1553 15 6 8.3026 -2.5473 1.1504 16 7 7.4692 -1.3536 1.3479 17 6 8.0347 -0.1491 1.5623 18 8 7.3398 0.8463 1.6236 19 6 9.5005 -0.0385 1.7231 20 6 10.2081 -1.0597 2.3810 21 6 11.5552 -0.9821 2.5355 22 6 12.2554 0.1332 2.0446 23 6 13.6513 0.2410 2.1963 24 6 14.2709 1.3508 1.6970 25 6 13.5217 2.3374 1.0575 26 7 12.2230 2.2341 0.9179 27 6 11.5553 1.1731 1.3838 28 6 10.1629 1.0720 1.2295 29 6 6.0076 -1.4979 1.3077 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.8485 -3.0426 -0.8909 33 1 3.8492 -3.0422 0.8890 34 1 6.1503 -4.1455 0.7322 35 1 6.0872 -4.0180 -1.0419 36 1 8.1160 -2.5794 -0.9976 37 1 8.4306 -4.1706 -0.2631 38 1 9.3511 -2.2553 1.0919 39 1 8.1606 -3.2343 1.9846 40 1 9.6751 -1.9172 2.7644 41 1 12.0877 -1.7755 3.0389 42 1 14.2164 -0.5326 2.6949 43 1 15.3402 1.4640 1.7973 44 1 14.0249 3.2096 0.6671 45 1 9.6128 1.8554 0.7293 46 1 5.6765 -2.1004 2.1536 47 1 5.5418 -0.5136 1.3556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266814844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 17.049388 kcal Electronic energy + Delta-G solvation = -28768.247010 eV Core-core repulsion = 24915.218556 eV Total energy + Delta-G solvation = -3853.028454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14749 -41.18874 -39.05022 -37.88550 -36.78601 -34.59425 -34.49011 -33.31565 -32.25804 -31.40026 -31.11890 -27.72695 -27.01294 -25.37570 -24.80699 -24.46603 -23.19575 -22.69513 -21.90097 -20.63281 -19.76908 -19.39872 -18.14644 -17.95782 -17.41047 -16.89165 -16.70960 -16.40277 -16.05961 -15.78407 -15.53852 -15.36366 -15.23151 -15.05205 -14.80839 -14.65428 -14.39965 -14.21132 -14.09305 -13.92107 -13.82751 -13.41278 -13.10551 -13.03787 -12.91859 -12.65921 -12.43409 -12.26921 -12.04580 -11.93153 -11.81754 -11.63636 -11.56241 -11.42665 -11.06655 -11.02199 -10.50064 -9.89256 -9.70078 -9.34860 -9.33699 -8.09469 -5.40579 -0.77763 -0.38439 0.85149 1.29194 1.32903 1.38289 1.39701 1.74485 2.08146 2.39785 3.02912 3.15444 3.22723 3.41500 3.50734 3.53976 3.78983 3.79937 3.83136 3.93062 3.97699 4.03081 4.04231 4.09367 4.23992 4.31467 4.40080 4.56042 4.57058 4.68194 4.70494 4.75392 4.83097 4.84838 4.87376 4.89618 5.00974 5.07134 5.09682 5.15822 5.18439 5.27885 5.30819 5.42224 5.47242 5.51460 5.71038 5.76445 6.16110 6.25691 6.90280 6.94613 7.01730 7.79665 7.95796 9.12076 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002694 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.832007 B =10391.836879 C =11686.289092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.055 4.055 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.764 5.764 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.054 0.946 13 C -0.106 4.106 14 C -0.129 4.129 15 C 0.084 3.916 16 N -0.597 5.597 17 C 0.545 3.455 18 O -0.589 6.589 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.075 4.075 22 C -0.102 4.102 23 C -0.053 4.053 24 C -0.164 4.164 25 C 0.126 3.874 26 N -0.519 5.519 27 C 0.096 3.904 28 C -0.062 4.062 29 C 0.121 3.879 30 H 0.258 0.742 31 H 0.360 0.640 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.184 0.816 43 H 0.179 0.821 44 H 0.184 0.816 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.704 -9.264 6.119 41.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.247 4.247 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.409 5.409 10 C 0.034 3.966 11 C -0.119 4.119 12 H 0.072 0.928 13 C -0.144 4.144 14 C -0.166 4.166 15 C -0.036 4.036 16 N -0.328 5.328 17 C 0.335 3.665 18 O -0.470 6.470 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.104 4.104 23 C -0.079 4.079 24 C -0.184 4.184 25 C -0.047 4.047 26 N -0.228 5.228 27 C -0.024 4.024 28 C -0.082 4.082 29 C -0.002 4.002 30 H 0.067 0.933 31 H 0.193 0.807 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.184 0.816 41 H 0.203 0.797 42 H 0.202 0.798 43 H 0.197 0.803 44 H 0.201 0.799 45 H 0.129 0.871 46 H 0.104 0.896 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 38.537 -8.274 5.735 39.831 hybrid contribution -0.484 1.432 -0.016 1.512 sum 38.053 -6.843 5.719 39.084 Atomic orbital electron populations 1.69838 1.06569 1.26480 1.60002 1.25304 0.95956 1.00335 1.03117 0.85637 0.78278 0.81206 0.77975 1.20598 1.21712 1.19617 1.19088 0.82583 0.93619 1.40571 0.91452 1.42910 1.02759 1.04339 1.90902 1.20860 0.89494 0.87145 0.99095 1.21614 0.94687 0.99034 0.96594 0.92795 1.21517 0.94667 0.94383 1.03842 1.21948 0.95745 1.02178 0.96778 1.22694 0.95847 0.85507 0.99532 1.48127 1.07120 1.08190 1.69319 1.18941 0.88468 0.82941 0.76182 1.90811 1.65127 1.38008 1.53101 1.19728 0.91588 0.97170 1.03100 1.21379 0.95261 0.97642 0.97834 1.21380 0.93426 0.97081 0.97467 1.19293 0.96132 0.95701 0.99295 1.22035 0.91614 0.98752 0.95458 1.22412 1.03617 0.94164 0.98166 1.23659 0.88568 0.99420 0.93033 1.68000 1.11744 1.23437 1.19588 1.18808 0.93236 0.92170 0.98178 1.21046 0.92831 0.96346 0.97947 1.21560 0.79260 1.00939 0.98452 0.93265 0.80718 0.94749 0.94563 0.89665 0.90547 0.93009 0.86611 0.86890 0.87684 0.81594 0.79724 0.79826 0.80330 0.79910 0.87115 0.89632 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.18 13.97 21.65 0.30 -64.88 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 3 Si 0.94 50.86 27.73 68.60 1.90 52.77 16 4 H -0.28 -14.78 7.11 99.48 0.71 -14.08 16 5 H -0.29 -15.63 7.11 99.48 0.71 -14.93 16 6 H -0.27 -14.44 6.52 99.48 0.65 -13.79 16 7 C -0.23 -13.63 10.47 84.04 0.88 -12.75 16 8 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 9 N -0.76 -38.44 5.18 -343.45 -1.78 -40.22 16 10 C 0.16 6.14 5.66 86.38 0.49 6.63 16 11 C -0.10 -3.01 2.38 -10.72 -0.03 -3.04 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.11 -2.05 5.16 30.63 0.16 -1.89 16 14 C -0.13 -1.84 6.09 30.68 0.19 -1.65 16 15 C 0.08 1.22 4.75 86.37 0.41 1.63 16 16 N -0.60 -15.67 2.97 -822.28 -2.45 -18.12 16 17 C 0.54 17.60 7.37 86.79 0.64 18.24 16 18 O -0.59 -25.93 16.21 -3.88 -0.06 -25.99 16 19 C -0.11 -2.75 5.28 -20.12 -0.11 -2.85 16 20 C -0.10 -1.47 7.24 22.28 0.16 -1.31 16 21 C -0.08 -0.73 9.73 22.27 0.22 -0.52 16 22 C -0.10 -1.48 5.75 -21.23 -0.12 -1.61 16 23 C -0.05 -0.38 9.88 22.51 0.22 -0.16 16 24 C -0.16 -1.15 10.03 22.16 0.22 -0.93 16 25 C 0.13 1.71 11.15 85.10 0.95 2.66 16 26 N -0.52 -12.08 10.34 -188.65 -1.95 -14.03 16 27 C 0.10 2.24 6.60 40.25 0.27 2.50 16 28 C -0.06 -1.73 9.56 22.85 0.22 -1.51 16 29 C 0.12 3.87 5.52 86.36 0.48 4.34 16 30 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 31 H 0.36 18.47 4.76 -92.71 -0.44 18.03 16 32 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.05 0.92 8.14 -2.38 -0.02 0.91 16 37 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 1.27 4.45 -2.39 -0.01 1.26 16 39 H 0.11 0.93 8.04 -2.39 -0.02 0.91 16 40 H 0.17 1.43 6.01 -2.91 -0.02 1.42 16 41 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 42 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 44 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.11 3.69 7.97 -2.91 -0.02 3.67 16 46 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.05 2.13 6.20 -2.39 -0.01 2.12 16 Total: -1.00 -91.02 376.43 2.17 -88.85 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.49 Total: 16.81 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.71 Total: 4.80 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -5.87 Total: -137.24 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.90 Total: 52.77 kcal Total: -91.02 2.17 -88.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266814844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.902 kcal (2) G-P(sol) polarization free energy of solvation -91.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds