Wall clock time and date at job start Sat Apr 11 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48498 * 109.47163 * 270.00186 * 3 2 1 5 5 H 1.48501 * 109.47035 * 29.99852 * 3 2 1 6 6 H 1.48499 * 109.47143 * 149.99913 * 3 2 1 7 7 C 1.38806 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00317 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00198 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00018 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47012 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49582 * 55.06015 * 11 10 9 13 13 C 1.53039 * 109.50087 * 175.16072 * 11 10 9 14 14 C 1.53042 * 109.53847 * 181.31840 * 13 11 10 15 15 C 1.53618 * 109.24031 * 298.50832 * 14 13 11 16 16 N 1.46922 * 108.54766 * 54.85907 * 15 14 13 17 17 C 1.34772 * 120.63399 * 126.36354 * 16 15 14 18 18 O 1.21545 * 120.00027 * 175.91224 * 17 16 15 19 19 C 1.47886 * 119.99995 * 356.18986 * 17 16 15 20 20 C 1.40574 * 119.70551 * 50.97475 * 19 17 16 21 21 C 1.35813 * 120.73590 * 179.97438 * 20 19 17 22 22 C 1.40547 * 119.98271 * 0.03403 * 21 20 19 23 23 C 1.40821 * 121.13897 * 179.97438 * 22 21 20 24 24 C 1.36554 * 118.20081 * 180.02562 * 23 22 21 25 25 C 1.39417 * 119.94058 * 359.97438 * 24 23 22 26 26 N 1.31019 * 121.71022 * 0.02562 * 25 24 23 27 27 C 1.33748 * 121.35416 * 359.97438 * 26 25 24 28 28 C 1.38399 * 119.70634 * 230.70813 * 19 17 16 29 29 C 1.46930 * 118.73380 * 306.09752 * 16 15 14 30 30 H 0.97005 * 119.99769 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99639 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47709 * 60.00002 * 10 9 7 33 33 H 1.09001 * 109.47171 * 299.99401 * 10 9 7 34 34 H 1.09002 * 109.45734 * 301.33775 * 13 11 10 35 35 H 1.08993 * 109.46248 * 61.30706 * 13 11 10 36 36 H 1.08998 * 109.50008 * 58.58750 * 14 13 11 37 37 H 1.09007 * 109.49664 * 178.65234 * 14 13 11 38 38 H 1.09004 * 109.73968 * 295.11881 * 15 14 13 39 39 H 1.09003 * 109.66420 * 174.55121 * 15 14 13 40 40 H 1.07994 * 119.63386 * 359.97438 * 20 19 17 41 41 H 1.07992 * 120.01039 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.89702 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.02921 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.14455 * 180.02562 * 25 24 23 45 45 H 1.08006 * 120.23815 * 0.02562 * 28 19 17 46 46 H 1.09010 * 109.58386 * 173.64520 * 29 16 15 47 47 H 1.09000 * 109.58575 * 293.92329 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0009 12 1 5.8664 -1.5472 0.8420 13 6 6.3811 -3.5115 0.1196 14 6 7.8851 -3.2304 0.1530 15 6 8.3020 -2.5486 -1.1589 16 7 7.4692 -1.3532 -1.3495 17 6 8.0352 -0.1489 -1.5629 18 8 7.3366 0.8188 -1.7929 19 6 9.5066 -0.0059 -1.5231 20 6 10.3116 -0.8738 -2.2813 21 6 11.6648 -0.7608 -2.2608 22 6 12.2750 0.2317 -1.4747 23 6 13.6758 0.3703 -1.4349 24 6 14.2048 1.3549 -0.6504 25 6 13.3617 2.1891 0.0823 26 7 12.0587 2.0577 0.0431 27 6 11.4767 1.1139 -0.7049 28 6 10.0786 0.9848 -0.7441 29 6 6.0075 -1.4969 -1.3090 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8491 -3.0416 -0.8918 33 1 3.8484 -3.0435 0.8882 34 1 6.0862 -4.0195 1.0378 35 1 6.1493 -4.1450 -0.7364 36 1 8.1145 -2.5766 0.9945 37 1 8.4284 -4.1690 0.2630 38 1 8.1537 -3.2341 -1.9934 39 1 9.3511 -2.2580 -1.1041 40 1 9.8488 -1.6389 -2.8869 41 1 12.2720 -1.4336 -2.8482 42 1 14.3144 -0.2850 -2.0087 43 1 15.2754 1.4872 -0.5977 44 1 13.7939 2.9639 0.6982 45 1 9.4546 1.6510 -0.1668 46 1 5.5422 -0.5121 -1.3533 47 1 5.6756 -2.0962 -2.1568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266814845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:13 Heat of formation + Delta-G solvation = 37.540654 kcal Electronic energy + Delta-G solvation = -28795.271818 eV Core-core repulsion = 24943.131931 eV Total energy + Delta-G solvation = -3852.139886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37126 -40.23737 -37.93177 -37.04022 -35.10522 -33.91765 -33.02286 -31.80178 -31.19642 -30.48733 -30.07905 -26.41639 -25.76837 -24.58427 -24.04562 -22.94946 -22.53565 -21.36717 -20.70271 -19.62395 -18.62777 -17.65909 -17.38637 -17.25529 -16.55316 -15.95716 -15.30109 -15.05897 -14.88028 -14.71991 -14.63825 -14.40234 -14.26818 -13.94873 -13.80820 -13.49425 -13.37851 -13.09067 -12.94588 -12.61791 -12.47709 -12.27308 -12.18951 -11.99586 -11.58252 -11.36648 -11.18188 -10.99930 -10.89437 -10.71032 -10.49141 -10.28456 -10.07404 -9.97236 -9.84611 -9.52024 -9.15378 -8.85219 -8.74749 -8.63119 -7.18182 -5.71650 -3.07266 -0.10368 0.25559 1.50893 2.20034 2.66003 2.94532 3.47732 3.52547 3.56237 3.66611 3.85074 4.08994 4.19720 4.31654 4.41633 4.51757 4.61942 4.66453 4.66855 4.79574 4.80008 4.85691 5.03577 5.06580 5.19341 5.29924 5.33294 5.41114 5.46072 5.51080 5.58616 5.62082 5.64864 5.72490 5.79815 5.83470 5.87866 5.89924 6.00353 6.02438 6.05629 6.28052 6.30363 6.33488 6.47563 6.66854 6.76426 7.28893 7.48619 8.03774 8.04296 8.47332 9.26339 9.99296 10.18332 11.46521 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002735 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.467144 B =10236.628733 C =11387.270382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.112 4.112 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.097 3.903 16 N -0.603 5.603 17 C 0.554 3.446 18 O -0.523 6.523 19 C -0.101 4.101 20 C -0.092 4.092 21 C -0.099 4.099 22 C -0.092 4.092 23 C -0.060 4.060 24 C -0.171 4.171 25 C 0.130 3.870 26 N -0.467 5.467 27 C 0.123 3.877 28 C -0.037 4.037 29 C 0.118 3.882 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.145 0.855 46 H 0.097 0.903 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.235 -5.893 -3.283 34.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.038 3.962 11 C -0.131 4.131 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.026 4.026 16 N -0.335 5.335 17 C 0.341 3.659 18 O -0.399 6.399 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.094 4.094 23 C -0.086 4.086 24 C -0.191 4.191 25 C -0.043 4.043 26 N -0.174 5.174 27 C 0.002 3.998 28 C -0.056 4.056 29 C -0.003 4.003 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.179 0.821 45 H 0.163 0.837 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 32.943 -4.942 -2.954 33.442 hybrid contribution 1.144 0.642 -0.437 1.382 sum 34.087 -4.301 -3.392 34.524 Atomic orbital electron populations 1.69709 1.05093 1.25821 1.57615 1.24655 0.95226 0.97208 1.01910 0.86596 0.79195 0.84920 0.78143 1.20827 1.21711 1.20282 1.19033 0.80603 0.94685 1.43116 0.89209 1.42778 1.04134 1.02238 1.91163 1.20611 0.87272 0.89454 0.98904 1.21754 0.96980 0.96742 0.97648 0.90775 1.21514 0.93708 0.97126 1.02645 1.21993 0.97195 1.00644 0.97365 1.22156 0.95377 0.86838 0.98220 1.48102 1.07868 1.07087 1.70488 1.18305 0.87154 0.83069 0.77327 1.90863 1.63314 1.37950 1.47753 1.19893 0.93626 0.97403 0.99692 1.20993 0.93621 0.98113 0.98309 1.20863 0.94674 0.97614 0.98640 1.18934 0.94354 0.97449 0.98687 1.21511 0.93462 0.96975 0.96627 1.21970 1.01806 0.96892 0.98423 1.23040 0.88689 0.97044 0.95524 1.68051 1.12727 1.18740 1.17933 1.18730 0.93668 0.92692 0.94715 1.21126 0.92407 0.95564 0.96537 1.21786 0.77478 1.03310 0.97721 0.93090 0.80510 0.95311 0.95141 0.91237 0.91483 0.91475 0.90725 0.90908 0.89262 0.84598 0.84540 0.84149 0.84300 0.82141 0.83723 0.88462 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.17 13.97 55.49 0.78 -29.39 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 23.59 27.74 -169.99 -4.71 18.87 16 4 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.28 -7.14 6.52 56.52 0.37 -6.77 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.76 -18.57 5.18 -59.91 -0.31 -18.88 16 10 C 0.17 3.16 5.65 -4.04 -0.02 3.14 16 11 C -0.11 -1.70 2.38 -90.50 -0.21 -1.91 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.11 -1.25 5.16 -26.69 -0.14 -1.38 16 14 C -0.13 -1.21 6.10 -26.39 -0.16 -1.38 16 15 C 0.10 0.88 5.38 -3.49 -0.02 0.86 16 16 N -0.60 -7.98 2.97 -173.60 -0.51 -8.50 16 17 C 0.55 8.39 7.21 -12.31 -0.09 8.30 16 18 O -0.52 -10.35 16.46 5.33 0.09 -10.26 16 19 C -0.10 -1.21 4.99 -105.01 -0.52 -1.74 16 20 C -0.09 -0.79 7.25 -39.57 -0.29 -1.08 16 21 C -0.10 -0.71 9.74 -39.58 -0.39 -1.10 16 22 C -0.09 -0.81 5.75 -106.73 -0.61 -1.42 16 23 C -0.06 -0.37 9.89 -39.21 -0.39 -0.76 16 24 C -0.17 -0.97 10.03 -39.75 -0.40 -1.36 16 25 C 0.13 1.00 11.15 -17.46 -0.19 0.80 16 26 N -0.47 -5.28 10.34 -10.98 -0.11 -5.40 16 27 C 0.12 1.40 6.60 -84.87 -0.56 0.84 16 28 C -0.04 -0.47 9.68 -38.69 -0.37 -0.84 16 29 C 0.12 1.86 5.50 -3.71 -0.02 1.84 16 30 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 31 H 0.36 8.94 4.75 -40.82 -0.19 8.75 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.69 4.56 -51.93 -0.24 0.45 16 40 H 0.14 0.91 7.06 -52.49 -0.37 0.54 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 43 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 44 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.15 1.96 8.06 -52.48 -0.42 1.54 16 46 H 0.10 1.89 6.23 -51.92 -0.32 1.56 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -37.20 378.34 -10.37 -47.56 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.64 Total: 4.67 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -4.64 Total: -4.38 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.16 Total: -62.17 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.71 Total: 18.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.20 -10.37 -47.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266814845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.104 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds