Wall clock time and date at job start Sat Apr 11 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48498 * 109.47163 * 270.00186 * 3 2 1 5 5 H 1.48501 * 109.47035 * 29.99852 * 3 2 1 6 6 H 1.48499 * 109.47143 * 149.99913 * 3 2 1 7 7 C 1.38806 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00317 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00198 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00018 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47012 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49582 * 55.06015 * 11 10 9 13 13 C 1.53039 * 109.50087 * 175.16072 * 11 10 9 14 14 C 1.53042 * 109.53847 * 181.31840 * 13 11 10 15 15 C 1.53618 * 109.24031 * 298.50832 * 14 13 11 16 16 N 1.46922 * 108.54766 * 54.85907 * 15 14 13 17 17 C 1.34772 * 120.63399 * 126.36354 * 16 15 14 18 18 O 1.21545 * 120.00027 * 175.91224 * 17 16 15 19 19 C 1.47886 * 119.99995 * 356.18986 * 17 16 15 20 20 C 1.40574 * 119.70551 * 50.97475 * 19 17 16 21 21 C 1.35813 * 120.73590 * 179.97438 * 20 19 17 22 22 C 1.40547 * 119.98271 * 0.03403 * 21 20 19 23 23 C 1.40821 * 121.13897 * 179.97438 * 22 21 20 24 24 C 1.36554 * 118.20081 * 180.02562 * 23 22 21 25 25 C 1.39417 * 119.94058 * 359.97438 * 24 23 22 26 26 N 1.31019 * 121.71022 * 0.02562 * 25 24 23 27 27 C 1.33748 * 121.35416 * 359.97438 * 26 25 24 28 28 C 1.38399 * 119.70634 * 230.70813 * 19 17 16 29 29 C 1.46930 * 118.73380 * 306.09752 * 16 15 14 30 30 H 0.97005 * 119.99769 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99639 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47709 * 60.00002 * 10 9 7 33 33 H 1.09001 * 109.47171 * 299.99401 * 10 9 7 34 34 H 1.09002 * 109.45734 * 301.33775 * 13 11 10 35 35 H 1.08993 * 109.46248 * 61.30706 * 13 11 10 36 36 H 1.08998 * 109.50008 * 58.58750 * 14 13 11 37 37 H 1.09007 * 109.49664 * 178.65234 * 14 13 11 38 38 H 1.09004 * 109.73968 * 295.11881 * 15 14 13 39 39 H 1.09003 * 109.66420 * 174.55121 * 15 14 13 40 40 H 1.07994 * 119.63386 * 359.97438 * 20 19 17 41 41 H 1.07992 * 120.01039 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.89702 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.02921 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.14455 * 180.02562 * 25 24 23 45 45 H 1.08006 * 120.23815 * 0.02562 * 28 19 17 46 46 H 1.09010 * 109.58386 * 173.64520 * 29 16 15 47 47 H 1.09000 * 109.58575 * 293.92329 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0009 12 1 5.8664 -1.5472 0.8420 13 6 6.3811 -3.5115 0.1196 14 6 7.8851 -3.2304 0.1530 15 6 8.3020 -2.5486 -1.1589 16 7 7.4692 -1.3532 -1.3495 17 6 8.0352 -0.1489 -1.5629 18 8 7.3366 0.8188 -1.7929 19 6 9.5066 -0.0059 -1.5231 20 6 10.3116 -0.8738 -2.2813 21 6 11.6648 -0.7608 -2.2608 22 6 12.2750 0.2317 -1.4747 23 6 13.6758 0.3703 -1.4349 24 6 14.2048 1.3549 -0.6504 25 6 13.3617 2.1891 0.0823 26 7 12.0587 2.0577 0.0431 27 6 11.4767 1.1139 -0.7049 28 6 10.0786 0.9848 -0.7441 29 6 6.0075 -1.4969 -1.3090 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8491 -3.0416 -0.8918 33 1 3.8484 -3.0435 0.8882 34 1 6.0862 -4.0195 1.0378 35 1 6.1493 -4.1450 -0.7364 36 1 8.1145 -2.5766 0.9945 37 1 8.4284 -4.1690 0.2630 38 1 8.1537 -3.2341 -1.9934 39 1 9.3511 -2.2580 -1.1041 40 1 9.8488 -1.6389 -2.8869 41 1 12.2720 -1.4336 -2.8482 42 1 14.3144 -0.2850 -2.0087 43 1 15.2754 1.4872 -0.5977 44 1 13.7939 2.9639 0.6982 45 1 9.4546 1.6510 -0.1668 46 1 5.5422 -0.5121 -1.3533 47 1 5.6756 -2.0962 -2.1568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266814845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:12 Heat of formation + Delta-G solvation = 12.170516 kcal Electronic energy + Delta-G solvation = -28796.371949 eV Core-core repulsion = 24943.131931 eV Total energy + Delta-G solvation = -3853.240018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11799 -41.18501 -39.06365 -37.85710 -36.78143 -34.59644 -34.47011 -33.30829 -32.21167 -31.42807 -31.13676 -27.72273 -26.98068 -25.35986 -24.78501 -24.51736 -23.20880 -22.69408 -21.91857 -20.62841 -19.75440 -19.31418 -18.21939 -17.94389 -17.54498 -16.90310 -16.71412 -16.33751 -16.03495 -15.79354 -15.54940 -15.39436 -15.24023 -15.04702 -14.84734 -14.64021 -14.38880 -14.18421 -14.05821 -13.92509 -13.82773 -13.41891 -13.13557 -13.06338 -12.94281 -12.62900 -12.51130 -12.25045 -12.06289 -11.93892 -11.86866 -11.65727 -11.56573 -11.43434 -11.07150 -11.04101 -10.49681 -9.87324 -9.72595 -9.35835 -9.34325 -8.09683 -5.40951 -0.74434 -0.36795 0.87178 1.28983 1.33236 1.35654 1.37062 1.70384 2.02002 2.39312 3.02232 3.15042 3.22579 3.41304 3.50386 3.53432 3.79579 3.79992 3.82539 3.92421 3.97479 4.03410 4.03986 4.07022 4.24714 4.31180 4.39176 4.55482 4.56171 4.67389 4.70314 4.74678 4.82549 4.84936 4.87131 4.89386 5.00205 5.07297 5.08840 5.15880 5.17521 5.28103 5.29610 5.40916 5.46496 5.50562 5.70819 5.76480 6.15864 6.23759 6.90455 6.92379 7.01375 7.79150 7.95216 9.11882 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002735 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.467144 B =10236.628733 C =11387.270382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.055 4.055 3 Si 0.941 3.059 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.764 5.764 10 C 0.160 3.840 11 C -0.099 4.099 12 H 0.054 0.946 13 C -0.106 4.106 14 C -0.128 4.128 15 C 0.090 3.910 16 N -0.596 5.596 17 C 0.547 3.453 18 O -0.587 6.587 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.072 4.072 22 C -0.105 4.105 23 C -0.052 4.052 24 C -0.166 4.166 25 C 0.127 3.873 26 N -0.520 5.520 27 C 0.100 3.900 28 C -0.069 4.069 29 C 0.121 3.879 30 H 0.258 0.742 31 H 0.360 0.640 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.179 0.821 44 H 0.184 0.816 45 H 0.110 0.890 46 H 0.051 0.949 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.807 -8.600 -4.385 40.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.247 4.247 3 Si 0.770 3.230 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.409 5.409 10 C 0.034 3.966 11 C -0.119 4.119 12 H 0.072 0.928 13 C -0.144 4.144 14 C -0.166 4.166 15 C -0.030 4.030 16 N -0.327 5.327 17 C 0.336 3.664 18 O -0.468 6.468 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.090 4.090 22 C -0.107 4.107 23 C -0.078 4.078 24 C -0.185 4.185 25 C -0.046 4.046 26 N -0.228 5.228 27 C -0.020 4.020 28 C -0.089 4.089 29 C -0.002 4.002 30 H 0.068 0.932 31 H 0.193 0.807 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.178 0.822 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.196 0.804 44 H 0.201 0.799 45 H 0.128 0.872 46 H 0.070 0.930 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 38.579 -7.722 -4.039 39.551 hybrid contribution -0.441 1.424 -0.060 1.492 sum 38.138 -6.298 -4.100 38.872 Atomic orbital electron populations 1.69840 1.06565 1.26488 1.59975 1.25303 0.95960 1.00333 1.03099 0.85627 0.78237 0.81261 0.77871 1.21158 1.21427 1.19442 1.19090 0.82571 0.93631 1.40601 0.91448 1.42906 1.02770 1.04319 1.90917 1.20856 0.89452 0.87153 0.99115 1.21619 0.94706 0.99026 0.96558 0.92771 1.21513 0.94618 0.94419 1.03842 1.21993 0.95758 1.02124 0.96712 1.22571 0.95665 0.85384 0.99426 1.48181 1.07159 1.08111 1.69236 1.18943 0.88546 0.82691 0.76203 1.90814 1.65028 1.40106 1.50870 1.19701 0.91654 0.98583 1.00961 1.21177 0.94164 0.98258 0.98412 1.21356 0.94226 0.96594 0.96845 1.19272 0.95744 0.97247 0.98427 1.22026 0.92367 0.97170 0.96195 1.22402 1.03463 0.95682 0.96954 1.23653 0.87903 0.97629 0.95398 1.68001 1.14841 1.20198 1.19807 1.18791 0.93185 0.94008 0.96039 1.20967 0.93462 0.96317 0.98139 1.21561 0.79230 1.00981 0.98425 0.93246 0.80741 0.94480 0.94801 0.90531 0.89676 0.92949 0.86853 0.87891 0.87337 0.82150 0.79832 0.79882 0.80365 0.79929 0.87203 0.93029 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.11 13.97 21.65 0.30 -64.81 16 2 C -0.05 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.94 50.81 27.74 68.60 1.90 52.71 16 4 H -0.28 -15.42 7.11 99.48 0.71 -14.71 16 5 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 6 H -0.27 -13.96 6.52 99.48 0.65 -13.31 16 7 C -0.23 -13.64 10.47 84.03 0.88 -12.76 16 8 H 0.07 4.29 8.06 -2.91 -0.02 4.26 16 9 N -0.76 -38.40 5.18 -343.46 -1.78 -40.17 16 10 C 0.16 6.15 5.65 86.38 0.49 6.64 16 11 C -0.10 -3.01 2.38 -10.72 -0.03 -3.03 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.11 -2.08 5.16 30.62 0.16 -1.92 16 14 C -0.13 -1.89 6.10 30.82 0.19 -1.70 16 15 C 0.09 1.35 5.38 86.51 0.47 1.82 16 16 N -0.60 -15.70 2.97 -821.43 -2.44 -18.14 16 17 C 0.55 17.51 7.21 86.80 0.63 18.14 16 18 O -0.59 -25.50 16.46 -3.86 -0.06 -25.56 16 19 C -0.10 -2.56 4.99 -20.11 -0.10 -2.67 16 20 C -0.10 -1.48 7.25 22.28 0.16 -1.32 16 21 C -0.07 -0.72 9.74 22.27 0.22 -0.50 16 22 C -0.10 -1.53 5.75 -21.23 -0.12 -1.66 16 23 C -0.05 -0.39 9.89 22.51 0.22 -0.16 16 24 C -0.17 -1.18 10.03 22.16 0.22 -0.96 16 25 C 0.13 1.73 11.15 85.10 0.95 2.68 16 26 N -0.52 -12.09 10.34 -188.66 -1.95 -14.04 16 27 C 0.10 2.32 6.60 40.25 0.27 2.58 16 28 C -0.07 -1.91 9.68 22.85 0.22 -1.69 16 29 C 0.12 3.86 5.50 86.36 0.48 4.34 16 30 H 0.26 16.43 8.31 -92.70 -0.77 15.66 16 31 H 0.36 18.39 4.75 -92.71 -0.44 17.95 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.11 1.29 4.56 -2.39 -0.01 1.27 16 40 H 0.16 1.48 7.06 -2.91 -0.02 1.46 16 41 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 43 H 0.18 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 46 H 0.05 2.14 6.23 -2.38 -0.01 2.12 16 47 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -90.11 378.34 2.22 -87.89 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.49 Total: 17.28 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.76 Total: 4.84 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -5.86 Total: -137.16 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.90 Total: 52.71 kcal Total: -90.11 2.22 -87.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266814845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.061 kcal (2) G-P(sol) polarization free energy of solvation -90.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds