Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48507 * 109.46835 * 274.98077 * 3 2 1 5 5 H 1.48494 * 109.47688 * 34.98203 * 3 2 1 6 6 H 1.48498 * 109.47173 * 154.98545 * 3 2 1 7 7 C 1.38809 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99627 * 186.82872 * 7 2 1 9 9 N 1.36930 * 120.00363 * 6.82895 * 7 2 1 10 10 C 1.47027 * 125.64620 * 353.84986 * 9 7 2 11 11 C 1.54320 * 107.26957 * 181.09481 * 10 9 7 12 12 C 1.55155 * 102.94467 * 22.19184 * 11 10 9 13 13 H 1.09005 * 111.03605 * 82.58363 * 12 11 10 14 14 C 1.53001 * 111.00667 * 206.42118 * 12 11 10 15 15 N 1.46497 * 109.46945 * 178.64911 * 14 12 11 16 16 C 1.34783 * 119.99716 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00219 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99889 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47096 * 179.97438 * 18 16 15 20 20 C 1.39374 * 119.48927 * 269.97987 * 19 18 16 21 21 C 1.36173 * 121.08136 * 179.97438 * 20 19 18 22 22 C 1.40370 * 119.51575 * 359.97438 * 21 20 19 23 23 C 1.40436 * 122.07552 * 180.02562 * 22 21 20 24 24 N 1.31242 * 119.87952 * 180.02562 * 23 22 21 25 25 C 1.32610 * 122.78073 * 359.73645 * 24 23 22 26 26 C 1.36174 * 121.86925 * 0.54137 * 25 24 23 27 27 C 1.40687 * 118.67410 * 359.47640 * 26 25 24 28 28 C 1.36221 * 119.48613 * 90.00082 * 19 18 16 29 29 C 1.47420 * 125.65135 * 173.88956 * 9 7 2 30 30 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.88167 * 300.51126 * 10 9 7 32 32 H 1.08998 * 109.88060 * 61.52602 * 10 9 7 33 33 H 1.08999 * 110.72301 * 263.83025 * 11 10 9 34 34 H 1.09003 * 110.72122 * 140.55827 * 11 10 9 35 35 H 1.08996 * 109.46724 * 58.65409 * 14 12 11 36 36 H 1.09000 * 109.47099 * 298.65497 * 14 12 11 37 37 H 0.96992 * 120.00536 * 0.02562 * 15 14 12 38 38 H 1.08996 * 109.46966 * 60.00483 * 18 16 15 39 39 H 1.08996 * 109.47128 * 299.99982 * 18 16 15 40 40 H 1.07999 * 119.45926 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.24091 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.06109 * 359.97438 * 23 22 21 43 43 H 1.07994 * 119.06220 * 180.26912 * 25 24 23 44 44 H 1.08001 * 120.66068 * 179.74777 * 26 25 24 45 45 H 1.07999 * 120.25823 * 0.02562 * 28 19 18 46 46 H 1.09001 * 110.36835 * 37.00039 * 29 9 7 47 47 H 1.08995 * 110.46150 * 274.72345 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3949 5 1 1.5043 2.6201 0.8026 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1118 9 7 1.3329 -2.3839 -0.1399 10 6 -0.1292 -2.5349 -0.1716 11 6 -0.4311 -4.0413 -0.3167 12 6 0.8671 -4.7083 0.2098 13 1 0.8612 -4.7706 1.2981 14 6 1.0656 -6.0908 -0.4147 15 7 2.3145 -6.6753 0.0801 16 6 2.6982 -7.8980 -0.3375 17 8 2.0097 -8.5143 -1.1231 18 6 3.9826 -8.4996 0.1718 19 6 4.1783 -9.8613 -0.4434 20 6 3.6651 -10.9855 0.2011 21 6 3.8225 -12.2312 -0.3260 22 6 4.5124 -12.3868 -1.5386 23 6 4.7055 -13.6457 -2.1304 24 7 5.3578 -13.7414 -3.2652 25 6 5.8518 -12.6875 -3.9006 26 6 5.7228 -11.4249 -3.4071 27 6 5.0351 -11.2414 -2.1936 28 6 4.8544 -9.9744 -1.6206 29 6 1.9490 -3.7155 -0.2836 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5610 -2.1580 0.7554 32 1 -0.5399 -1.9887 -1.0208 33 1 -0.6019 -4.3016 -1.3613 34 1 -1.2863 -4.3242 0.2970 35 1 1.1136 -5.9960 -1.4994 36 1 0.2299 -6.7357 -0.1429 37 1 2.8654 -6.1824 0.7080 38 1 3.9341 -8.5950 1.2565 39 1 4.8184 -7.8545 -0.0992 40 1 3.1331 -10.8667 1.1334 41 1 3.4196 -13.0930 0.1851 42 1 4.3187 -14.5334 -1.6522 43 1 6.3750 -12.8352 -4.8337 44 1 6.1364 -10.5808 -3.9389 45 1 5.2475 -9.0950 -2.1090 46 1 2.8424 -3.7891 0.3365 47 1 2.1953 -3.9107 -1.3272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267299668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 34.638878 kcal Electronic energy + Delta-G solvation = -27530.854433 eV Core-core repulsion = 23678.588716 eV Total energy + Delta-G solvation = -3852.265717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15107 -39.82539 -37.98816 -37.43375 -34.68397 -33.41661 -32.94142 -32.46970 -30.18853 -29.90387 -28.80490 -27.77958 -25.52504 -24.29327 -23.76709 -22.92402 -22.46350 -20.73260 -19.98302 -19.72558 -18.11866 -17.47812 -17.21359 -16.91937 -16.69669 -16.01966 -15.55474 -15.23015 -14.91248 -14.63257 -14.52962 -14.40587 -14.11149 -13.85398 -13.76139 -13.48278 -13.21091 -12.94974 -12.41595 -12.27475 -12.22866 -12.06603 -11.96035 -11.74328 -11.44910 -11.34756 -10.94774 -10.83082 -10.50357 -10.47089 -10.19380 -10.06199 -9.94136 -9.84418 -9.78311 -9.68417 -9.18331 -9.02104 -8.61941 -8.35333 -6.86855 -5.76527 -3.09250 0.07517 0.59456 1.64431 2.57632 2.67223 3.25769 3.36947 3.42073 3.44213 3.81257 4.09463 4.19065 4.25407 4.45604 4.50575 4.55334 4.68651 4.75159 4.86554 4.97862 5.06526 5.09143 5.17200 5.20268 5.30623 5.35716 5.40686 5.49477 5.50385 5.64916 5.74681 5.76608 5.85182 6.00288 6.01651 6.04386 6.18962 6.29855 6.34013 6.39847 6.44159 6.48971 6.52907 6.63659 6.86346 7.47983 7.51471 7.60124 7.67534 7.78662 8.17952 8.22114 9.17617 9.78371 10.44812 11.35598 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.001775 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.283830 B =15766.998326 C =16292.267021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.133 3.867 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.537 6.537 18 C -0.110 4.110 19 C -0.038 4.038 20 C -0.101 4.101 21 C -0.088 4.088 22 C -0.113 4.113 23 C 0.145 3.855 24 N -0.493 5.493 25 C 0.071 3.929 26 C -0.152 4.152 27 C -0.021 4.021 28 C -0.099 4.099 29 C 0.143 3.857 30 H 0.252 0.748 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.402 0.598 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.034 0.966 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -24.612 0.655 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.376 5.376 16 C 0.297 3.703 17 O -0.414 6.414 18 C -0.150 4.150 19 C -0.039 4.039 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.027 4.027 24 N -0.201 5.201 25 C -0.071 4.071 26 C -0.172 4.172 27 C -0.026 4.026 28 C -0.117 4.117 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.155 0.845 45 H 0.149 0.851 46 H 0.053 0.947 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.098 -25.557 -0.408 27.132 hybrid contribution 0.501 2.172 0.653 2.323 sum 9.599 -23.385 0.244 25.280 Atomic orbital electron populations 1.69977 1.04931 1.25096 1.56630 1.24836 0.95717 0.97722 1.02108 0.86122 0.78650 0.83596 0.77530 1.21601 1.21753 1.20643 1.19046 0.91063 0.82581 1.43244 0.90477 1.44469 1.01685 1.01076 1.86002 1.21163 0.84410 0.88305 1.00990 1.22853 0.95454 0.99112 0.99954 1.22621 0.98632 0.92401 1.00115 0.90243 1.21393 0.85146 0.93504 0.99012 1.46081 1.25388 1.18057 1.48069 1.20394 0.86986 0.81366 0.81535 1.90737 1.55255 1.61071 1.34298 1.20799 0.97376 0.94399 1.02424 1.19143 0.96011 0.94024 0.94765 1.20788 0.98825 0.91971 1.00328 1.20918 0.97698 0.97924 0.94255 1.19036 1.00937 0.94542 0.96981 1.23194 0.92956 0.95709 0.90831 1.67411 1.09457 1.34266 1.08921 1.22155 0.97559 0.88080 0.99352 1.21931 1.00122 0.99220 0.95914 1.18126 0.96476 0.93363 0.94615 1.20800 0.99661 0.96174 0.95097 1.21550 0.93835 0.85955 0.97025 0.93715 0.93928 0.93553 0.92186 0.91969 0.91408 0.91728 0.76315 0.87529 0.87483 0.85539 0.84825 0.82073 0.83090 0.84458 0.85126 0.94747 0.96331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.36 55.49 0.57 -26.15 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.78 29.56 -169.99 -5.02 16.76 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.32 10.26 -15.06 -0.15 -6.47 16 8 H 0.08 2.03 7.84 -52.48 -0.41 1.61 16 9 N -0.61 -15.04 3.39 -170.08 -0.58 -15.62 16 10 C 0.18 4.17 5.38 -3.06 -0.02 4.15 16 11 C -0.13 -2.39 6.42 -24.90 -0.16 -2.55 16 12 C -0.12 -1.86 3.10 -88.47 -0.27 -2.13 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.13 1.81 5.12 -4.04 -0.02 1.79 16 15 N -0.72 -8.21 5.41 -60.29 -0.33 -8.54 16 16 C 0.51 6.04 7.82 -10.98 -0.09 5.95 16 17 O -0.54 -8.62 16.03 5.56 0.09 -8.53 16 18 C -0.11 -0.87 5.80 -29.03 -0.17 -1.04 16 19 C -0.04 -0.36 4.34 -104.92 -0.46 -0.81 16 20 C -0.10 -0.88 9.58 -39.90 -0.38 -1.26 16 21 C -0.09 -0.73 9.81 -39.52 -0.39 -1.12 16 22 C -0.11 -1.10 5.74 -106.86 -0.61 -1.72 16 23 C 0.14 1.31 11.05 -16.98 -0.19 1.12 16 24 N -0.49 -5.18 10.30 -13.15 -0.14 -5.32 16 25 C 0.07 0.66 11.07 -17.96 -0.20 0.46 16 26 C -0.15 -1.38 9.88 -39.40 -0.39 -1.77 16 27 C -0.02 -0.21 5.75 -106.82 -0.61 -0.83 16 28 C -0.10 -0.98 9.42 -39.56 -0.37 -1.35 16 29 C 0.14 2.74 6.41 -2.53 -0.02 2.73 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 1.11 7.55 -51.93 -0.39 0.72 16 32 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 33 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 3.73 8.34 -40.82 -0.34 3.39 16 38 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.11 0.64 8.07 -51.93 -0.42 0.23 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 43 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -34.90 389.40 -11.11 -46.00 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.98 Total: 0.67 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -4.59 Total: -5.14 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.46 Total: -55.63 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.90 -11.11 -46.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267299668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.640 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds