Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48507 * 109.46835 * 274.98077 * 3 2 1 5 5 H 1.48494 * 109.47688 * 34.98203 * 3 2 1 6 6 H 1.48498 * 109.47173 * 154.98545 * 3 2 1 7 7 C 1.38809 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99627 * 186.82872 * 7 2 1 9 9 N 1.36930 * 120.00363 * 6.82895 * 7 2 1 10 10 C 1.47027 * 125.64620 * 353.84986 * 9 7 2 11 11 C 1.54320 * 107.26957 * 181.09481 * 10 9 7 12 12 C 1.55155 * 102.94467 * 22.19184 * 11 10 9 13 13 H 1.09005 * 111.03605 * 82.58363 * 12 11 10 14 14 C 1.53001 * 111.00667 * 206.42118 * 12 11 10 15 15 N 1.46497 * 109.46945 * 178.64911 * 14 12 11 16 16 C 1.34783 * 119.99716 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00219 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99889 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47096 * 179.97438 * 18 16 15 20 20 C 1.39374 * 119.48927 * 269.97987 * 19 18 16 21 21 C 1.36173 * 121.08136 * 179.97438 * 20 19 18 22 22 C 1.40370 * 119.51575 * 359.97438 * 21 20 19 23 23 C 1.40436 * 122.07552 * 180.02562 * 22 21 20 24 24 N 1.31242 * 119.87952 * 180.02562 * 23 22 21 25 25 C 1.32610 * 122.78073 * 359.73645 * 24 23 22 26 26 C 1.36174 * 121.86925 * 0.54137 * 25 24 23 27 27 C 1.40687 * 118.67410 * 359.47640 * 26 25 24 28 28 C 1.36221 * 119.48613 * 90.00082 * 19 18 16 29 29 C 1.47420 * 125.65135 * 173.88956 * 9 7 2 30 30 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.88167 * 300.51126 * 10 9 7 32 32 H 1.08998 * 109.88060 * 61.52602 * 10 9 7 33 33 H 1.08999 * 110.72301 * 263.83025 * 11 10 9 34 34 H 1.09003 * 110.72122 * 140.55827 * 11 10 9 35 35 H 1.08996 * 109.46724 * 58.65409 * 14 12 11 36 36 H 1.09000 * 109.47099 * 298.65497 * 14 12 11 37 37 H 0.96992 * 120.00536 * 0.02562 * 15 14 12 38 38 H 1.08996 * 109.46966 * 60.00483 * 18 16 15 39 39 H 1.08996 * 109.47128 * 299.99982 * 18 16 15 40 40 H 1.07999 * 119.45926 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.24091 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.06109 * 359.97438 * 23 22 21 43 43 H 1.07994 * 119.06220 * 180.26912 * 25 24 23 44 44 H 1.08001 * 120.66068 * 179.74777 * 26 25 24 45 45 H 1.07999 * 120.25823 * 0.02562 * 28 19 18 46 46 H 1.09001 * 110.36835 * 37.00039 * 29 9 7 47 47 H 1.08995 * 110.46150 * 274.72345 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3949 5 1 1.5043 2.6201 0.8026 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1118 9 7 1.3329 -2.3839 -0.1399 10 6 -0.1292 -2.5349 -0.1716 11 6 -0.4311 -4.0413 -0.3167 12 6 0.8671 -4.7083 0.2098 13 1 0.8612 -4.7706 1.2981 14 6 1.0656 -6.0908 -0.4147 15 7 2.3145 -6.6753 0.0801 16 6 2.6982 -7.8980 -0.3375 17 8 2.0097 -8.5143 -1.1231 18 6 3.9826 -8.4996 0.1718 19 6 4.1783 -9.8613 -0.4434 20 6 3.6651 -10.9855 0.2011 21 6 3.8225 -12.2312 -0.3260 22 6 4.5124 -12.3868 -1.5386 23 6 4.7055 -13.6457 -2.1304 24 7 5.3578 -13.7414 -3.2652 25 6 5.8518 -12.6875 -3.9006 26 6 5.7228 -11.4249 -3.4071 27 6 5.0351 -11.2414 -2.1936 28 6 4.8544 -9.9744 -1.6206 29 6 1.9490 -3.7155 -0.2836 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5610 -2.1580 0.7554 32 1 -0.5399 -1.9887 -1.0208 33 1 -0.6019 -4.3016 -1.3613 34 1 -1.2863 -4.3242 0.2970 35 1 1.1136 -5.9960 -1.4994 36 1 0.2299 -6.7357 -0.1429 37 1 2.8654 -6.1824 0.7080 38 1 3.9341 -8.5950 1.2565 39 1 4.8184 -7.8545 -0.0992 40 1 3.1331 -10.8667 1.1334 41 1 3.4196 -13.0930 0.1851 42 1 4.3187 -14.5334 -1.6522 43 1 6.3750 -12.8352 -4.8337 44 1 6.1364 -10.5808 -3.9389 45 1 5.2475 -9.0950 -2.1090 46 1 2.8424 -3.7891 0.3365 47 1 2.1953 -3.9107 -1.3272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267299668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 12.980525 kcal Electronic energy + Delta-G solvation = -27531.793609 eV Core-core repulsion = 23678.588716 eV Total energy + Delta-G solvation = -3853.204894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80649 -40.77060 -39.31909 -38.32947 -35.98777 -34.32678 -34.03334 -33.54526 -31.67637 -30.73055 -30.11631 -28.85292 -27.17402 -25.32393 -24.81728 -23.76069 -23.13394 -22.09860 -21.44401 -21.00999 -18.89881 -18.74408 -18.16333 -17.87711 -17.61555 -17.14186 -16.65243 -16.50644 -15.99829 -15.84784 -15.56025 -15.20439 -15.09645 -14.97396 -14.56031 -14.51080 -14.36898 -13.98728 -13.79310 -13.56429 -13.45981 -13.07806 -12.92810 -12.83189 -12.73289 -12.66857 -12.62602 -12.00316 -11.94916 -11.89178 -11.84254 -11.53540 -11.44309 -11.15658 -10.92617 -10.69073 -10.47109 -10.03499 -9.87253 -8.99738 -8.88464 -7.86153 -5.20351 -0.56590 -0.08397 0.98977 1.45892 1.47974 1.56507 1.69569 1.97296 2.40742 2.49584 3.13722 3.32789 3.50077 3.57653 3.62561 3.64822 3.80001 3.89331 3.93831 4.01588 4.04869 4.08769 4.13020 4.25739 4.38590 4.46490 4.51689 4.62646 4.64439 4.71946 4.73317 4.81039 4.82795 4.88911 4.94391 5.07285 5.09226 5.14017 5.14693 5.39353 5.40316 5.46782 5.51241 5.54726 5.68401 5.71450 5.77871 5.91643 6.20624 6.61534 7.01123 7.10406 7.30593 7.78734 8.43547 9.24962 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.001775 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.283830 B =15766.998326 C =16292.267021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.241 4.241 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.092 0.908 14 C 0.145 3.855 15 N -0.717 5.717 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.102 4.102 19 C -0.047 4.047 20 C -0.114 4.114 21 C -0.088 4.088 22 C -0.131 4.131 23 C 0.141 3.859 24 N -0.519 5.519 25 C 0.059 3.941 26 C -0.161 4.161 27 C -0.044 4.044 28 C -0.117 4.117 29 C 0.138 3.862 30 H 0.246 0.754 31 H 0.009 0.991 32 H 0.005 0.995 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.415 0.585 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.189 0.811 43 H 0.170 0.830 44 H 0.154 0.846 45 H 0.137 0.863 46 H 0.053 0.947 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -26.024 1.909 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.056 3.944 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.110 0.890 14 C 0.021 3.979 15 N -0.369 5.369 16 C 0.301 3.699 17 O -0.463 6.463 18 C -0.141 4.141 19 C -0.049 4.049 20 C -0.132 4.132 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.030 4.030 24 N -0.227 5.227 25 C -0.083 4.083 26 C -0.181 4.181 27 C -0.049 4.049 28 C -0.135 4.135 29 C 0.013 3.987 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.206 0.794 43 H 0.188 0.812 44 H 0.172 0.828 45 H 0.155 0.845 46 H 0.071 0.929 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.475 -26.989 0.865 28.964 hybrid contribution 0.099 2.571 0.250 2.586 sum 10.574 -24.418 1.115 26.633 Atomic orbital electron populations 1.70201 1.06386 1.25223 1.58181 1.25692 0.96594 1.01141 1.02770 0.85085 0.78019 0.79295 0.77113 1.21789 1.22288 1.18845 1.19482 0.91713 0.83852 1.41947 0.89666 1.44803 1.02417 1.02533 1.85776 1.20926 0.84025 0.91868 0.97532 1.22719 0.97470 0.94831 1.01260 1.22420 0.95754 0.92485 1.00733 0.88974 1.21091 0.86640 0.92207 0.97958 1.45968 1.24728 1.18154 1.48086 1.21009 0.87618 0.80812 0.80490 1.90727 1.56952 1.62192 1.36403 1.20845 0.95630 0.93601 1.04017 1.19416 0.95672 0.95084 0.94700 1.21118 0.98937 0.91943 1.01181 1.21280 0.96805 0.99008 0.93652 1.19318 1.01491 0.94695 0.97808 1.23672 0.92274 0.96589 0.90463 1.67449 1.10481 1.34958 1.09804 1.22519 0.97654 0.88065 1.00076 1.22161 1.00166 0.99829 0.95906 1.18456 0.97065 0.94029 0.95329 1.20996 1.00499 0.96327 0.95705 1.21747 0.95377 0.84227 0.97313 0.94488 0.97279 0.97671 0.91382 0.89648 0.92847 0.91039 0.74802 0.84375 0.85311 0.83564 0.82027 0.79376 0.81239 0.82814 0.84472 0.92910 0.96580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.13 10.36 21.65 0.22 -56.91 16 2 C -0.07 -3.90 5.48 84.86 0.47 -3.43 16 3 Si 0.98 45.19 29.56 68.60 2.03 47.22 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.24 -13.19 10.26 84.03 0.86 -12.33 16 8 H 0.09 4.40 7.84 -2.91 -0.02 4.37 16 9 N -0.63 -31.25 3.39 -692.01 -2.35 -33.60 16 10 C 0.18 8.80 5.38 86.73 0.47 9.27 16 11 C -0.12 -4.26 6.42 31.78 0.20 -4.06 16 12 C -0.09 -2.75 3.10 -9.40 -0.03 -2.78 16 13 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 14 C 0.15 3.60 5.12 86.38 0.44 4.04 16 15 N -0.72 -14.07 5.41 -463.06 -2.50 -16.57 16 16 C 0.51 10.79 7.82 87.66 0.69 11.47 16 17 O -0.58 -17.86 16.03 -3.03 -0.05 -17.91 16 18 C -0.10 -1.28 5.80 29.10 0.17 -1.11 16 19 C -0.05 -0.79 4.34 -20.06 -0.09 -0.88 16 20 C -0.11 -1.72 9.58 22.06 0.21 -1.51 16 21 C -0.09 -1.28 9.81 22.31 0.22 -1.07 16 22 C -0.13 -2.43 5.74 -21.31 -0.12 -2.56 16 23 C 0.14 2.43 11.05 85.32 0.94 3.37 16 24 N -0.52 -10.67 10.30 -195.53 -2.01 -12.68 16 25 C 0.06 1.07 11.07 84.09 0.93 2.00 16 26 C -0.16 -2.89 9.88 22.39 0.22 -2.67 16 27 C -0.04 -0.89 5.75 -21.29 -0.12 -1.01 16 28 C -0.12 -2.20 9.42 22.28 0.21 -1.99 16 29 C 0.14 5.09 6.41 86.86 0.56 5.64 16 30 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.01 0.49 7.55 -2.39 -0.02 0.47 16 32 H 0.01 0.28 7.36 -2.39 -0.02 0.26 16 33 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.42 6.11 8.34 -92.71 -0.77 5.34 16 38 H 0.14 0.88 8.08 -2.39 -0.02 0.86 16 39 H 0.13 1.08 8.07 -2.39 -0.02 1.06 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.02 0.62 8.00 -2.39 -0.02 0.60 16 Total: -1.00 -78.53 389.40 1.77 -76.76 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.20 Total: 13.27 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 6.23 Total: 0.42 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.64 Total: -119.77 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -78.53 1.77 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267299668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.744 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds