Wall clock time and date at job start Sat Apr 11 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47282 * 270.00229 * 3 2 1 5 5 H 1.48505 * 109.47190 * 30.00359 * 3 2 1 6 6 H 1.48498 * 109.47305 * 150.00263 * 3 2 1 7 7 C 1.38816 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00167 * 157.93478 * 7 2 1 9 9 N 1.36934 * 119.99751 * 337.93197 * 7 2 1 10 10 C 1.46498 * 120.00316 * 324.93236 * 9 7 2 11 11 C 1.52998 * 109.46975 * 269.99742 * 10 9 7 12 12 N 1.46499 * 109.47526 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00439 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99518 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00143 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.46880 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46990 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.47476 * 180.02562 * 17 16 15 19 19 C 1.36377 * 125.96177 * 269.69221 * 18 17 16 20 20 O 1.35634 * 125.98511 * 0.02675 * 19 18 17 21 21 N 1.30902 * 108.02463 * 179.88128 * 19 18 17 22 22 N 1.40112 * 107.93836 * 0.37505 * 21 19 18 23 23 C 1.30911 * 107.94252 * 359.76213 * 22 21 19 24 24 O 1.35631 * 125.99003 * 179.97438 * 23 22 21 25 25 C 1.46507 * 119.99904 * 144.92554 * 9 7 2 26 26 C 1.52999 * 117.49499 * 3.24410 * 25 9 7 27 27 C 1.53000 * 117.49784 * 294.58387 * 25 9 7 28 28 H 0.97001 * 120.00157 * 356.06462 * 1 2 3 29 29 H 1.09001 * 109.47102 * 149.99973 * 10 9 7 30 30 H 1.08994 * 109.47412 * 29.99543 * 10 9 7 31 31 H 1.08999 * 109.47388 * 59.99805 * 11 10 9 32 32 H 1.09004 * 109.47039 * 300.00091 * 11 10 9 33 33 H 0.97007 * 119.99375 * 359.97438 * 12 11 10 34 34 H 1.08999 * 109.47062 * 59.99537 * 15 13 12 35 35 H 1.09002 * 109.46707 * 299.99800 * 15 13 12 36 36 H 1.08999 * 109.47648 * 59.99900 * 16 15 13 37 37 H 1.09002 * 109.47290 * 299.99446 * 16 15 13 38 38 H 1.09004 * 109.47082 * 299.99904 * 17 16 15 39 39 H 1.09004 * 109.47513 * 59.99490 * 17 16 15 40 40 H 0.96705 * 113.99067 * 90.00897 * 20 19 18 41 41 H 0.96694 * 113.99773 * 270.02225 * 24 23 22 42 42 H 1.08993 * 115.54808 * 148.90479 * 25 9 7 43 43 H 1.09000 * 117.49957 * 359.97438 * 26 25 9 44 44 H 1.09000 * 117.49782 * 145.02201 * 26 25 9 45 45 H 1.09002 * 117.49540 * 214.97374 * 27 25 9 46 46 H 1.08998 * 117.49891 * 359.96991 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4456 -2.2813 1.5534 11 6 1.1886 -2.4675 2.8778 12 7 0.2335 -2.4046 3.9868 13 6 0.6645 -2.5435 5.2563 14 8 1.8431 -2.7210 5.4804 15 6 -0.3181 -2.4783 6.3971 16 6 0.4251 -2.6646 7.7214 17 6 -0.5725 -2.5989 8.8796 18 7 0.1390 -2.7767 10.1477 19 6 0.3719 -3.9647 10.7757 20 8 -0.0143 -5.1880 10.3353 21 7 1.0360 -3.7177 11.8764 22 7 1.2281 -2.3325 11.9628 23 6 0.6790 -1.7827 10.9093 24 8 0.6515 -0.4567 10.6252 25 6 1.7038 -3.6308 -0.1885 26 6 2.7654 -3.6431 -1.2902 27 6 1.2873 -3.8149 -1.6491 28 1 -0.4850 0.8381 0.0577 29 1 -0.2968 -3.0712 1.4392 30 1 -0.0521 -1.3116 1.5493 31 1 1.9311 -1.6776 2.9921 32 1 1.6863 -3.4372 2.8820 33 1 -0.7092 -2.2622 3.8075 34 1 -1.0603 -3.2683 6.2830 35 1 -0.8160 -1.5086 6.3926 36 1 1.1675 -1.8748 7.8357 37 1 0.9226 -3.6344 7.7255 38 1 -1.0706 -1.6293 8.8757 39 1 -1.3148 -3.3890 8.7651 40 1 0.6362 -5.6253 9.7689 41 1 -0.1192 0.0059 10.9815 42 1 1.6465 -4.5014 0.4648 43 1 3.2380 -2.6943 -1.5443 44 1 3.4061 -4.5220 -1.3620 45 1 0.9562 -4.8067 -1.9569 46 1 0.7873 -2.9793 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267328450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:45 Heat of formation + Delta-G solvation = 20.071691 kcal Electronic energy + Delta-G solvation = -28699.416331 eV Core-core repulsion = 24435.669671 eV Total energy + Delta-G solvation = -4263.746661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62326 -39.55456 -38.55902 -37.47148 -37.21314 -36.07372 -34.83298 -33.31033 -32.69942 -30.88860 -29.93922 -28.44085 -26.87728 -24.50815 -23.15692 -23.09887 -22.12888 -21.69579 -21.30742 -20.25959 -19.79071 -19.22029 -19.05289 -17.39911 -17.04531 -16.60740 -16.10286 -16.09296 -15.79895 -15.58873 -15.40881 -14.71520 -14.53632 -14.39825 -13.95683 -13.58926 -13.33552 -13.13392 -12.99203 -12.78149 -12.63213 -12.35544 -12.20840 -12.00235 -11.65204 -11.61500 -11.33183 -11.11982 -10.87239 -10.81395 -10.78888 -10.41197 -10.39251 -10.20837 -9.95974 -9.80498 -9.72500 -9.70276 -9.36214 -8.68603 -8.56941 -6.72452 -5.93905 -3.53501 1.14750 1.35670 1.86783 2.78770 2.85382 3.23745 3.28173 3.35121 3.40161 3.51349 3.99049 4.31399 4.39433 4.49442 4.69961 4.80371 4.83980 4.85845 4.91479 5.04046 5.18518 5.21805 5.26691 5.29644 5.61018 5.73110 5.80011 5.82358 5.95261 6.00611 6.12086 6.20398 6.42080 6.43045 6.53810 6.62728 6.73974 6.89048 6.92404 6.98172 7.14183 7.42670 7.52429 7.68591 7.77683 8.32607 8.43438 9.00227 9.62911 10.17580 11.02828 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002063 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.100980 B =13569.120395 C =14687.092709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.547 5.547 10 C 0.136 3.864 11 C 0.098 3.902 12 N -0.719 5.719 13 C 0.505 3.495 14 O -0.548 6.548 15 C -0.138 4.138 16 C -0.118 4.118 17 C 0.100 3.900 18 N -0.509 5.509 19 C 0.407 3.593 20 O -0.437 6.437 21 N -0.298 5.298 22 N -0.298 5.298 23 C 0.408 3.592 24 O -0.433 6.433 25 C 0.118 3.882 26 C -0.195 4.195 27 C -0.220 4.220 28 H 0.255 0.745 29 H 0.031 0.969 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.398 0.602 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 -5.784 15.947 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.189 4.189 3 Si 0.725 3.275 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.264 5.264 10 C 0.009 3.991 11 C -0.027 4.027 12 N -0.370 5.370 13 C 0.290 3.710 14 O -0.426 6.426 15 C -0.178 4.178 16 C -0.157 4.157 17 C -0.023 4.023 18 N -0.229 5.229 19 C 0.097 3.903 20 O -0.238 6.238 21 N -0.142 5.142 22 N -0.143 5.143 23 C 0.098 3.902 24 O -0.233 6.233 25 C 0.010 3.990 26 C -0.233 4.233 27 C -0.261 4.261 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.269 0.731 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.889 -5.933 17.407 19.310 hybrid contribution -0.861 1.164 -1.759 2.278 sum -6.750 -4.770 15.648 17.696 Atomic orbital electron populations 1.70026 1.05511 1.26134 1.51004 1.25119 0.95034 0.98834 0.99919 0.86408 0.79716 0.83408 0.77966 1.21111 1.21387 1.20156 1.19085 0.94567 0.85374 1.39733 0.91436 1.43228 1.49202 1.01718 1.32267 1.21098 0.90976 1.03572 0.83424 1.22338 0.92756 1.01001 0.86607 1.46112 1.12169 1.72492 1.06187 1.20442 0.89360 0.77008 0.84144 1.90714 1.17920 1.49371 1.84617 1.21551 0.98670 1.04708 0.92921 1.21659 0.97844 1.04763 0.91468 1.22056 0.95000 1.04994 0.80286 1.47155 1.46976 1.07076 1.21713 1.21330 0.97079 0.81141 0.90738 1.84920 1.46128 1.22860 1.69843 1.78367 1.16349 1.04351 1.15142 1.78374 1.21656 0.98444 1.15818 1.21338 0.96265 0.83345 0.89245 1.85008 1.49243 1.11262 1.77760 1.21235 1.00697 0.89908 0.87198 1.23047 0.91935 1.02000 1.06345 1.23364 0.97438 1.00712 1.04556 0.93495 0.95046 0.87668 0.91598 0.93200 0.76842 0.88596 0.88471 0.89890 0.90644 0.88300 0.87929 0.72678 0.73059 0.89506 0.88395 0.90645 0.91148 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.48 11.33 55.49 0.63 -22.85 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 3 Si 0.90 20.67 29.61 -169.99 -5.03 15.63 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.61 8.63 -15.06 -0.13 -6.74 16 8 H 0.07 1.75 6.55 -52.49 -0.34 1.41 16 9 N -0.55 -12.67 2.78 -165.66 -0.46 -13.13 16 10 C 0.14 2.82 5.45 -4.04 -0.02 2.80 16 11 C 0.10 1.84 6.00 -4.04 -0.02 1.81 16 12 N -0.72 -10.31 5.56 -60.29 -0.33 -10.65 16 13 C 0.51 6.99 7.83 -10.98 -0.09 6.90 16 14 O -0.55 -10.11 15.98 5.55 0.09 -10.02 16 15 C -0.14 -1.07 5.70 -27.88 -0.16 -1.23 16 16 C -0.12 -0.95 4.83 -26.73 -0.13 -1.08 16 17 C 0.10 0.54 6.01 -4.04 -0.02 0.52 16 18 N -0.51 -4.25 2.76 -120.05 -0.33 -4.58 16 19 C 0.41 3.94 9.15 -88.81 -0.81 3.13 16 20 O -0.44 -2.96 13.58 -18.60 -0.25 -3.22 16 21 N -0.30 -3.82 12.72 29.66 0.38 -3.44 16 22 N -0.30 -3.85 12.72 29.66 0.38 -3.47 16 23 C 0.41 4.01 9.15 -88.81 -0.81 3.20 16 24 O -0.43 -3.09 13.58 -18.59 -0.25 -3.35 16 25 C 0.12 2.42 6.56 -67.93 -0.45 1.97 16 26 C -0.20 -3.72 9.80 -26.69 -0.26 -3.99 16 27 C -0.22 -4.28 10.36 -26.69 -0.28 -4.56 16 28 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 29 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.11 2.45 5.36 -51.93 -0.28 2.17 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 4.58 8.47 -40.82 -0.35 4.23 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.41 0.95 9.06 45.56 0.41 1.36 16 41 H 0.41 0.55 9.06 45.56 0.41 0.96 16 42 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 43 H 0.10 2.04 6.37 -51.93 -0.33 1.71 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -35.99 395.24 -7.60 -43.59 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.10 Total: 6.60 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.27 Total: 2.94 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.26 Total: -58.13 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.42 Total: -16.58 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.99 -7.60 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267328450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.661 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds