Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00488 * 2 1 4 4 H 1.48501 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47090 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.46830 * 60.00299 * 3 2 1 7 7 C 1.38815 * 119.99425 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00295 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00341 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47281 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.54029 * 307.61108 * 11 10 9 13 13 C 1.54898 * 110.48697 * 70.22552 * 11 10 9 14 14 C 1.54893 * 102.74772 * 156.61777 * 13 11 10 15 15 C 1.54264 * 104.19831 * 322.06064 * 14 13 11 16 16 C 1.53873 * 106.59935 * 23.60634 * 15 14 13 17 17 H 1.08998 * 110.03639 * 240.66885 * 16 15 14 18 18 N 1.46506 * 110.03129 * 119.28680 * 16 15 14 19 19 C 1.34768 * 119.99786 * 86.45434 * 18 16 15 20 20 O 1.21583 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.47568 * 119.99752 * 179.97438 * 19 18 16 22 22 C 1.38709 * 120.43603 * 354.10666 * 21 19 18 23 23 C 1.39001 * 120.75638 * 180.02562 * 22 21 19 24 24 C 1.36341 * 121.18929 * 359.94430 * 23 22 21 25 25 C 1.40361 * 119.92778 * 0.03157 * 24 23 22 26 26 C 1.40682 * 122.09315 * 179.97438 * 25 24 23 27 27 C 1.36263 * 118.66403 * 180.02562 * 26 25 24 28 28 N 1.32517 * 121.83777 * 359.73660 * 27 26 25 29 29 C 1.31312 * 122.71893 * 0.54103 * 28 27 26 30 30 C 1.40136 * 119.92427 * 359.47700 * 29 28 27 31 31 H 0.97010 * 119.99327 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99977 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46983 * 59.99639 * 10 9 7 34 34 H 1.09001 * 109.46762 * 299.99845 * 10 9 7 35 35 H 1.08996 * 110.75217 * 38.30408 * 13 11 10 36 36 H 1.08995 * 110.91256 * 275.00700 * 13 11 10 37 37 H 1.09000 * 110.48494 * 203.37647 * 14 13 11 38 38 H 1.08998 * 110.48322 * 80.73844 * 14 13 11 39 39 H 1.08999 * 110.02860 * 264.32574 * 15 14 13 40 40 H 1.08995 * 110.03619 * 142.89137 * 15 14 13 41 41 H 0.97000 * 120.00109 * 266.45193 * 18 16 15 42 42 H 1.07994 * 119.62156 * 359.97059 * 22 21 19 43 43 H 1.07997 * 119.40661 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.03984 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.66999 * 0.03821 * 26 25 24 46 46 H 1.08000 * 119.08360 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.03502 * 179.74721 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0027 11 6 1.0635 -4.8197 -0.0031 12 1 0.3418 -4.7061 0.8058 13 6 0.3376 -4.9118 -1.3684 14 6 -0.1131 -6.3929 -1.4166 15 6 1.0587 -7.1660 -0.7771 16 6 1.8068 -6.1658 0.1216 17 1 2.8370 -6.0571 -0.2176 18 7 1.7827 -6.6253 1.5125 19 6 2.7262 -7.4792 1.9564 20 8 3.5976 -7.8677 1.2029 21 6 2.7022 -7.9416 3.3576 22 6 1.7887 -7.4118 4.2569 23 6 1.7606 -7.8421 5.5783 24 6 2.6254 -8.7948 6.0291 25 6 3.5659 -9.3580 5.1525 26 6 4.4797 -10.3432 5.5691 27 6 5.3632 -10.8418 4.6593 28 7 5.3787 -10.4279 3.4005 29 6 4.5588 -9.5087 2.9455 30 6 3.6108 -8.9320 3.8013 31 1 -0.4850 0.8402 0.0004 32 1 0.3554 -2.3880 -0.0023 33 1 2.6845 -3.7155 0.8872 34 1 2.6844 -3.7139 -0.8928 35 1 1.0232 -4.6898 -2.1861 36 1 -0.5240 -4.2447 -1.3966 37 1 -0.2635 -6.7125 -2.4478 38 1 -1.0248 -6.5333 -0.8360 39 1 1.7255 -7.5420 -1.5529 40 1 0.6777 -7.9933 -0.1783 41 1 1.0877 -6.3151 2.1138 42 1 1.0919 -6.6556 3.9268 43 1 1.0404 -7.4145 6.2601 44 1 2.5870 -9.1158 7.0596 45 1 4.4808 -10.6975 6.5893 46 1 6.0680 -11.5981 4.9719 47 1 4.6120 -9.2008 1.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268291368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 25.742469 kcal Electronic energy + Delta-G solvation = -28490.452845 eV Core-core repulsion = 24637.801351 eV Total energy + Delta-G solvation = -3852.651494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35134 -39.88641 -38.10098 -37.42463 -34.56955 -33.80758 -33.12129 -31.47316 -31.42701 -30.13640 -28.62595 -27.57621 -25.01997 -24.45528 -23.77541 -23.43925 -22.11332 -21.21533 -20.10874 -19.86674 -18.20270 -18.04148 -17.14709 -17.00384 -16.48254 -16.16424 -15.50964 -15.21223 -14.99563 -14.83477 -14.47465 -14.13065 -14.02777 -13.96134 -13.69168 -13.31721 -13.20680 -12.98940 -12.86530 -12.39847 -12.38655 -12.13839 -11.89917 -11.80073 -11.38158 -10.98207 -10.87230 -10.79568 -10.50611 -10.44583 -10.41196 -10.33451 -10.00548 -9.94268 -9.73058 -9.55731 -9.46629 -9.12858 -8.89120 -8.39638 -6.93553 -5.78688 -3.06786 -0.19699 0.57620 1.35451 2.45660 2.95989 3.04842 3.42191 3.48543 3.50412 3.84187 4.17649 4.24555 4.35655 4.44884 4.52008 4.55899 4.61581 4.70545 4.76556 4.79325 4.97036 5.01468 5.24197 5.39141 5.41837 5.42232 5.52705 5.58738 5.60200 5.63384 5.70910 5.76639 5.78323 5.82574 5.89317 5.98851 6.02894 6.12409 6.17747 6.25289 6.32464 6.46566 6.49830 6.53217 6.56638 6.74815 6.86759 7.35619 7.69869 7.80201 8.05878 8.40494 9.52073 10.09301 10.44366 11.44289 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.002519 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.172030 B =11114.367294 C =12017.597855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.145 3.855 17 H 0.097 0.903 18 N -0.708 5.708 19 C 0.560 3.440 20 O -0.532 6.532 21 C -0.099 4.099 22 C -0.077 4.077 23 C -0.106 4.106 24 C -0.088 4.088 25 C -0.031 4.031 26 C -0.164 4.164 27 C 0.077 3.923 28 N -0.490 5.490 29 C 0.146 3.854 30 C -0.079 4.079 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -22.395 10.689 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.097 0.903 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.115 0.885 18 N -0.358 5.358 19 C 0.347 3.653 20 O -0.411 6.411 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.125 4.125 24 C -0.106 4.106 25 C -0.036 4.036 26 C -0.184 4.184 27 C -0.066 4.066 28 N -0.198 5.198 29 C -0.024 4.024 30 C -0.082 4.082 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.236 0.764 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.169 0.831 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.540 -23.001 9.672 25.081 hybrid contribution -0.879 1.546 1.162 2.125 sum 1.661 -21.455 10.834 24.093 Atomic orbital electron populations 1.69667 1.05082 1.25494 1.58055 1.24724 0.95529 0.97658 1.03117 0.86130 0.78857 0.84138 0.77178 1.20547 1.21858 1.21899 1.19277 0.91073 0.84165 1.42306 0.91200 1.42327 1.05800 0.99868 1.89476 1.20689 0.92901 0.85160 0.97956 1.22434 0.97882 0.93099 0.98682 0.90259 1.22456 1.00541 0.95242 0.96602 1.22391 0.97560 0.95937 1.00402 1.22542 0.97588 0.97840 0.98997 1.21805 1.01489 0.93118 0.79502 0.88531 1.46124 1.29895 1.46359 1.13425 1.18061 0.81651 0.79006 0.86538 1.90568 1.36364 1.56846 1.57339 1.19936 0.97834 0.98558 0.94066 1.21503 0.96699 0.98067 0.93354 1.20937 0.99079 0.96879 0.95591 1.21175 0.94068 0.95935 0.99445 1.18174 0.96254 0.96345 0.92837 1.21871 0.97011 0.98135 1.01344 1.22333 0.97076 0.98274 0.88942 1.67685 1.23724 1.12400 1.16002 1.24631 0.87303 0.88476 1.01961 1.18859 0.97734 0.97483 0.94131 0.93608 0.78286 0.96464 0.96025 0.90980 0.90666 0.91744 0.91859 0.91109 0.91713 0.76369 0.84719 0.84617 0.84685 0.84431 0.83077 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -17.93 5.49 -59.91 -0.33 -18.26 16 10 C 0.16 3.13 5.54 -4.04 -0.02 3.11 16 11 C -0.10 -1.50 2.58 -88.96 -0.23 -1.73 16 12 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 13 C -0.11 -1.56 6.19 -24.73 -0.15 -1.71 16 14 C -0.13 -1.41 6.83 -25.07 -0.17 -1.59 16 15 C -0.13 -1.51 6.59 -25.61 -0.17 -1.68 16 16 C 0.15 1.89 2.80 -66.81 -0.19 1.70 16 17 H 0.10 1.43 7.30 -51.93 -0.38 1.05 16 18 N -0.71 -8.15 4.94 -53.75 -0.27 -8.42 16 19 C 0.56 7.20 7.72 -12.46 -0.10 7.10 16 20 O -0.53 -8.20 13.15 5.29 0.07 -8.13 16 21 C -0.10 -1.12 5.90 -104.66 -0.62 -1.74 16 22 C -0.08 -0.67 9.51 -39.12 -0.37 -1.04 16 23 C -0.11 -0.77 9.93 -39.98 -0.40 -1.16 16 24 C -0.09 -0.67 9.79 -39.47 -0.39 -1.06 16 25 C -0.03 -0.31 5.75 -106.83 -0.61 -0.92 16 26 C -0.16 -1.43 9.88 -39.37 -0.39 -1.82 16 27 C 0.08 0.77 11.07 -17.97 -0.20 0.57 16 28 N -0.49 -6.36 10.30 -13.21 -0.14 -6.49 16 29 C 0.15 1.95 10.49 -17.06 -0.18 1.77 16 30 C -0.08 -0.96 5.76 -106.59 -0.61 -1.57 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.38 9.78 7.63 -40.82 -0.31 9.47 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 35 H 0.07 1.08 7.97 -51.93 -0.41 0.66 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 41 H 0.40 3.75 6.41 -40.82 -0.26 3.49 16 42 H 0.14 0.89 6.42 -52.49 -0.34 0.55 16 43 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.20 2.84 4.98 -52.49 -0.26 2.58 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -33.18 383.10 -10.77 -43.95 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.54 Total: 10.34 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -5.04 Total: -9.01 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.01 Total: -60.24 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.18 -10.77 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268291368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.696 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds