Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99863 * 2 1 4 4 H 1.48499 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47226 * 300.00209 * 3 2 1 6 6 H 1.48504 * 109.47033 * 60.00002 * 3 2 1 7 7 C 1.38816 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99468 * 359.97438 * 7 2 1 10 10 C 1.46512 * 119.99711 * 186.23153 * 9 7 2 11 11 C 1.53003 * 110.05182 * 57.74857 * 10 9 7 12 12 N 1.46505 * 109.47060 * 56.33370 * 11 10 9 13 13 C 1.34780 * 119.99782 * 175.58730 * 12 11 10 14 14 O 1.21604 * 119.99694 * 359.97438 * 13 12 11 15 15 C 1.47440 * 119.99747 * 179.97438 * 13 12 11 16 16 C 1.38955 * 121.17120 * 359.71990 * 15 13 12 17 17 N 1.32200 * 121.31638 * 179.72661 * 16 15 13 18 18 C 1.31194 * 123.69587 * 0.59736 * 17 16 15 19 19 C 1.40392 * 120.91481 * 359.67416 * 18 17 16 20 20 C 1.40396 * 122.14177 * 179.97438 * 19 18 17 21 21 C 1.36223 * 119.48584 * 180.02562 * 20 19 18 22 22 C 1.39295 * 121.10715 * 0.05221 * 21 20 19 23 23 C 1.36441 * 120.94559 * 359.97438 * 22 21 20 24 24 C 1.39686 * 119.43480 * 359.97438 * 23 22 21 25 25 C 1.53869 * 110.03109 * 179.16238 * 10 9 7 26 26 C 1.54269 * 106.59609 * 119.28381 * 25 10 9 27 27 C 1.54891 * 104.19782 * 336.39497 * 26 25 10 28 28 C 1.54262 * 110.02976 * 296.33463 * 10 9 7 29 29 H 0.96998 * 120.00594 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00535 * 6.23912 * 9 7 2 31 31 H 1.09003 * 109.46653 * 176.32610 * 11 10 9 32 32 H 1.08994 * 109.47409 * 296.33104 * 11 10 9 33 33 H 0.96997 * 120.00133 * 355.57702 * 12 11 10 34 34 H 1.07997 * 119.33920 * 0.02562 * 16 15 13 35 35 H 1.08000 * 119.54583 * 179.69557 * 18 17 16 36 36 H 1.08000 * 120.25487 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.44497 * 180.02562 * 21 20 19 38 38 H 1.07993 * 119.52733 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.28149 * 179.97438 * 23 22 21 40 40 H 1.08996 * 110.03906 * 238.57225 * 25 10 9 41 41 H 1.09004 * 110.03304 * 0.02562 * 25 10 9 42 42 H 1.09008 * 110.48451 * 95.07175 * 26 25 10 43 43 H 1.09002 * 110.48756 * 217.70881 * 26 25 10 44 44 H 1.09008 * 110.75283 * 279.62393 * 27 26 25 45 45 H 1.08999 * 110.75687 * 156.25823 * 27 26 25 46 46 H 1.08992 * 110.49346 * 23.00248 * 28 10 9 47 47 H 1.09006 * 110.48646 * 145.64894 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0518 -3.6531 0.1366 11 6 2.8603 -3.6557 1.4356 12 7 1.9651 -3.4076 2.5685 13 6 2.4432 -3.4537 3.8278 14 8 3.6174 -3.7016 4.0236 15 6 1.5424 -3.2034 4.9679 16 6 0.1979 -2.9123 4.7718 17 7 -0.6135 -2.6927 5.7921 18 6 -0.2292 -2.7180 7.0463 19 6 1.1045 -2.9947 7.3865 20 6 1.5438 -3.0278 8.7195 21 6 2.8509 -3.3015 8.9881 22 6 3.7601 -3.5481 7.9620 23 6 3.3673 -3.5233 6.6556 24 6 2.0338 -3.2469 6.3448 25 6 1.0629 -4.8319 0.1289 26 6 1.4351 -5.7113 -1.0828 27 6 2.1727 -4.7441 -2.0418 28 6 2.9904 -3.8571 -1.0704 29 1 -0.4851 0.8400 -0.0004 30 1 0.3599 -2.3905 -0.0915 31 1 3.3442 -4.6245 1.5603 32 1 3.6182 -2.8736 1.3934 33 1 1.0284 -3.2101 2.4122 34 1 -0.1930 -2.8693 3.7660 35 1 -0.9488 -2.5238 7.8278 36 1 0.8507 -2.8378 9.5258 37 1 3.1881 -3.3273 10.0138 38 1 4.7906 -3.7620 8.2040 39 1 4.0814 -3.7157 5.8685 40 1 1.1589 -5.4060 1.0504 41 1 0.0428 -4.4628 0.0226 42 1 2.0957 -6.5226 -0.7768 43 1 0.5371 -6.1075 -1.5568 44 1 1.4605 -4.1430 -2.6072 45 1 2.8334 -5.2940 -2.7120 46 1 3.2275 -2.9003 -1.5355 47 1 3.9022 -4.3689 -0.7625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270826720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 26.694602 kcal Electronic energy + Delta-G solvation = -29414.629222 eV Core-core repulsion = 25562.019015 eV Total energy + Delta-G solvation = -3852.610207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84669 -39.27183 -38.06791 -37.37815 -34.21086 -33.38250 -32.74390 -31.20807 -30.80382 -29.75500 -28.28524 -27.75846 -25.29340 -24.16522 -23.51341 -23.24363 -22.41634 -20.68602 -19.99622 -18.71616 -17.98712 -17.43506 -17.34076 -16.96282 -16.01688 -15.64226 -15.28238 -14.94426 -14.84962 -14.64965 -14.30533 -14.02743 -13.94508 -13.75083 -13.35607 -13.21686 -12.82250 -12.77400 -12.62127 -12.21769 -11.98097 -11.89365 -11.49142 -11.47995 -11.13782 -10.81757 -10.74749 -10.66065 -10.52664 -10.28307 -10.16012 -10.06827 -9.89099 -9.86818 -9.69482 -9.19885 -9.15588 -8.93882 -8.58879 -8.10624 -7.05438 -5.84252 -3.13922 0.05938 0.84101 1.64623 2.87688 3.33619 3.39528 3.47196 3.47893 3.52093 4.09519 4.27332 4.48480 4.53559 4.64335 4.66036 4.79262 5.00680 5.08043 5.08828 5.16960 5.20027 5.21712 5.47841 5.52405 5.59062 5.65147 5.70031 5.73962 5.90742 5.91523 5.92094 6.03049 6.07181 6.14584 6.22568 6.29196 6.29827 6.39682 6.40684 6.51648 6.54815 6.56963 6.74253 6.77024 6.79002 6.95697 7.04905 7.68476 7.86531 7.95143 8.34282 8.56218 9.46389 9.99318 10.34845 11.37574 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.003674 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.644024 B = 7619.849863 C = 8769.959609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.006 4.006 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.120 3.880 12 N -0.689 5.689 13 C 0.561 3.439 14 O -0.550 6.550 15 C -0.167 4.167 16 C 0.125 3.875 17 N -0.492 5.492 18 C 0.168 3.832 19 C -0.122 4.122 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.104 4.104 23 C -0.107 4.107 24 C 0.011 3.989 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.131 4.131 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.404 0.596 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.166 0.834 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -10.880 12.589 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.006 4.006 12 N -0.338 5.338 13 C 0.348 3.652 14 O -0.431 6.431 15 C -0.172 4.172 16 C -0.019 4.019 17 N -0.199 5.199 18 C -0.004 4.004 19 C -0.125 4.125 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.123 4.123 23 C -0.124 4.124 24 C 0.006 3.994 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.172 4.172 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.241 0.759 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.183 0.817 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.935 -10.732 12.332 16.462 hybrid contribution 0.542 1.124 0.106 1.252 sum 2.477 -9.608 12.438 15.911 Atomic orbital electron populations 1.69644 1.04982 1.25618 1.57408 1.24684 0.95396 0.97484 1.02670 0.86239 0.79019 0.84527 0.77155 1.20559 1.21896 1.21949 1.19124 0.91056 0.83773 1.42751 0.91170 1.42591 1.06225 0.99554 1.87013 1.20471 0.91370 0.87250 0.91284 1.21939 0.92979 0.99877 0.85788 1.45715 1.14242 1.69059 1.04806 1.17745 0.87030 0.77675 0.82772 1.90578 1.16982 1.50733 1.84836 1.22014 0.95489 1.06287 0.93371 1.22893 0.88728 0.91956 0.98332 1.67126 1.39052 1.13862 0.99854 1.23275 0.92721 0.90792 0.93632 1.19021 0.95212 1.03944 0.94277 1.20922 0.96433 0.99201 0.94562 1.20951 0.93564 0.99900 0.99551 1.21153 0.99950 0.98465 0.92755 1.21849 0.95584 0.96910 0.98072 1.18934 0.94030 0.95731 0.90726 1.22438 0.99841 0.96274 0.97896 1.22304 0.99614 0.97614 0.96302 1.22387 0.98745 0.97080 0.97239 1.22825 0.97302 1.00234 0.96811 0.93538 0.78081 0.92437 0.91463 0.75898 0.82054 0.81865 0.84935 0.85730 0.85560 0.81676 0.92063 0.91240 0.92283 0.92333 0.91385 0.92705 0.90258 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.31 13.07 55.49 0.73 -25.58 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.24 -5.97 8.39 -15.06 -0.13 -6.10 16 8 H 0.07 1.80 7.23 -52.48 -0.38 1.42 16 9 N -0.71 -15.59 4.64 -46.19 -0.21 -15.80 16 10 C 0.19 3.32 0.68 -130.70 -0.09 3.23 16 11 C 0.12 2.16 3.98 -4.04 -0.02 2.14 16 12 N -0.69 -12.15 5.05 -61.37 -0.31 -12.46 16 13 C 0.56 10.17 7.77 -12.51 -0.10 10.07 16 14 O -0.55 -10.89 13.74 5.27 0.07 -10.82 16 15 C -0.17 -2.75 6.07 -102.66 -0.62 -3.37 16 16 C 0.13 1.96 10.71 -17.13 -0.18 1.78 16 17 N -0.49 -7.33 10.22 -12.58 -0.13 -7.46 16 18 C 0.17 2.04 11.00 -17.01 -0.19 1.86 16 19 C -0.12 -1.56 5.74 -106.89 -0.61 -2.17 16 20 C -0.09 -0.89 9.82 -39.49 -0.39 -1.28 16 21 C -0.12 -1.16 9.94 -39.91 -0.40 -1.55 16 22 C -0.10 -1.16 9.96 -39.84 -0.40 -1.56 16 23 C -0.11 -1.53 9.32 -39.69 -0.37 -1.90 16 24 C 0.01 0.17 5.90 -104.75 -0.62 -0.45 16 25 C -0.13 -1.90 5.92 -25.62 -0.15 -2.05 16 26 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 27 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 28 C -0.13 -2.20 5.95 -25.07 -0.15 -2.35 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.38 9.04 7.28 -40.82 -0.30 8.74 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 33 H 0.40 7.00 6.10 -40.82 -0.25 6.75 16 34 H 0.16 2.43 6.44 -52.49 -0.34 2.09 16 35 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.17 2.64 5.24 -52.49 -0.28 2.37 16 40 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 41 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 42 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.52 7.16 -51.93 -0.37 1.15 16 47 H 0.05 0.81 7.86 -51.93 -0.41 0.40 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -30.31 378.99 -10.44 -40.75 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -6.42 Total: 16.28 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.84 Total: -7.61 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.07 Total: -61.31 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.31 -10.44 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270826720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.445 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds