Wall clock time and date at job start Sat Apr 11 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99863 * 2 1 4 4 H 1.48499 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47226 * 300.00209 * 3 2 1 6 6 H 1.48504 * 109.47033 * 60.00002 * 3 2 1 7 7 C 1.38816 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99468 * 359.97438 * 7 2 1 10 10 C 1.46512 * 119.99711 * 186.23153 * 9 7 2 11 11 C 1.53003 * 110.05182 * 57.74857 * 10 9 7 12 12 N 1.46505 * 109.47060 * 56.33370 * 11 10 9 13 13 C 1.34780 * 119.99782 * 175.58730 * 12 11 10 14 14 O 1.21604 * 119.99694 * 359.97438 * 13 12 11 15 15 C 1.47440 * 119.99747 * 179.97438 * 13 12 11 16 16 C 1.38955 * 121.17120 * 359.71990 * 15 13 12 17 17 N 1.32200 * 121.31638 * 179.72661 * 16 15 13 18 18 C 1.31194 * 123.69587 * 0.59736 * 17 16 15 19 19 C 1.40392 * 120.91481 * 359.67416 * 18 17 16 20 20 C 1.40396 * 122.14177 * 179.97438 * 19 18 17 21 21 C 1.36223 * 119.48584 * 180.02562 * 20 19 18 22 22 C 1.39295 * 121.10715 * 0.05221 * 21 20 19 23 23 C 1.36441 * 120.94559 * 359.97438 * 22 21 20 24 24 C 1.39686 * 119.43480 * 359.97438 * 23 22 21 25 25 C 1.53869 * 110.03109 * 179.16238 * 10 9 7 26 26 C 1.54269 * 106.59609 * 119.28381 * 25 10 9 27 27 C 1.54891 * 104.19782 * 336.39497 * 26 25 10 28 28 C 1.54262 * 110.02976 * 296.33463 * 10 9 7 29 29 H 0.96998 * 120.00594 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00535 * 6.23912 * 9 7 2 31 31 H 1.09003 * 109.46653 * 176.32610 * 11 10 9 32 32 H 1.08994 * 109.47409 * 296.33104 * 11 10 9 33 33 H 0.96997 * 120.00133 * 355.57702 * 12 11 10 34 34 H 1.07997 * 119.33920 * 0.02562 * 16 15 13 35 35 H 1.08000 * 119.54583 * 179.69557 * 18 17 16 36 36 H 1.08000 * 120.25487 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.44497 * 180.02562 * 21 20 19 38 38 H 1.07993 * 119.52733 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.28149 * 179.97438 * 23 22 21 40 40 H 1.08996 * 110.03906 * 238.57225 * 25 10 9 41 41 H 1.09004 * 110.03304 * 0.02562 * 25 10 9 42 42 H 1.09008 * 110.48451 * 95.07175 * 26 25 10 43 43 H 1.09002 * 110.48756 * 217.70881 * 26 25 10 44 44 H 1.09008 * 110.75283 * 279.62393 * 27 26 25 45 45 H 1.08999 * 110.75687 * 156.25823 * 27 26 25 46 46 H 1.08992 * 110.49346 * 23.00248 * 28 10 9 47 47 H 1.09006 * 110.48646 * 145.64894 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0518 -3.6531 0.1366 11 6 2.8603 -3.6557 1.4356 12 7 1.9651 -3.4076 2.5685 13 6 2.4432 -3.4537 3.8278 14 8 3.6174 -3.7016 4.0236 15 6 1.5424 -3.2034 4.9679 16 6 0.1979 -2.9123 4.7718 17 7 -0.6135 -2.6927 5.7921 18 6 -0.2292 -2.7180 7.0463 19 6 1.1045 -2.9947 7.3865 20 6 1.5438 -3.0278 8.7195 21 6 2.8509 -3.3015 8.9881 22 6 3.7601 -3.5481 7.9620 23 6 3.3673 -3.5233 6.6556 24 6 2.0338 -3.2469 6.3448 25 6 1.0629 -4.8319 0.1289 26 6 1.4351 -5.7113 -1.0828 27 6 2.1727 -4.7441 -2.0418 28 6 2.9904 -3.8571 -1.0704 29 1 -0.4851 0.8400 -0.0004 30 1 0.3599 -2.3905 -0.0915 31 1 3.3442 -4.6245 1.5603 32 1 3.6182 -2.8736 1.3934 33 1 1.0284 -3.2101 2.4122 34 1 -0.1930 -2.8693 3.7660 35 1 -0.9488 -2.5238 7.8278 36 1 0.8507 -2.8378 9.5258 37 1 3.1881 -3.3273 10.0138 38 1 4.7906 -3.7620 8.2040 39 1 4.0814 -3.7157 5.8685 40 1 1.1589 -5.4060 1.0504 41 1 0.0428 -4.4628 0.0226 42 1 2.0957 -6.5226 -0.7768 43 1 0.5371 -6.1075 -1.5568 44 1 1.4605 -4.1430 -2.6072 45 1 2.8334 -5.2940 -2.7120 46 1 3.2275 -2.9003 -1.5355 47 1 3.9022 -4.3689 -0.7625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270826720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:33 Heat of formation + Delta-G solvation = 8.442161 kcal Electronic energy + Delta-G solvation = -29415.420707 eV Core-core repulsion = 25562.019015 eV Total energy + Delta-G solvation = -3853.401692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92474 -40.62026 -39.45444 -38.35299 -35.64711 -35.18344 -33.80840 -32.47122 -32.16741 -30.90897 -29.57427 -29.26361 -26.63379 -25.65947 -24.73867 -24.49998 -23.47333 -21.97183 -21.27026 -20.17137 -19.05886 -18.93905 -18.55654 -18.40298 -17.31809 -16.84576 -16.60012 -16.32819 -16.08755 -15.92847 -15.73306 -15.34180 -15.19864 -15.08784 -14.73791 -14.39583 -14.19259 -14.02114 -13.70635 -13.46813 -13.22638 -13.17592 -12.97955 -12.91738 -12.54308 -12.39652 -12.30045 -12.18299 -11.89655 -11.73171 -11.60601 -11.44210 -11.33897 -11.11480 -11.06845 -10.88843 -10.40119 -10.11064 -10.03057 -9.13729 -8.97547 -7.93119 -5.18896 -0.96462 -0.13915 0.66826 1.40282 1.43869 1.49990 1.74867 2.13743 2.23383 2.54126 3.05535 3.22460 3.38838 3.49826 3.66067 3.70460 3.74885 3.82929 3.87995 3.92301 4.02779 4.12559 4.26784 4.32754 4.40592 4.50026 4.56645 4.62106 4.65241 4.73894 4.75881 4.84661 4.94461 5.02545 5.04180 5.09538 5.14691 5.17266 5.26176 5.37591 5.40027 5.42703 5.50607 5.54385 5.58277 5.61255 5.65554 5.91544 6.30661 6.51283 6.81980 7.14963 7.38250 8.10989 8.35761 9.29271 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.003674 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.644024 B = 7619.849863 C = 8769.959609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.061 4.061 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.302 1.302 7 C -0.215 4.215 8 H 0.064 0.936 9 N -0.715 5.715 10 C 0.185 3.815 11 C 0.127 3.873 12 N -0.690 5.690 13 C 0.558 3.442 14 O -0.575 6.575 15 C -0.199 4.199 16 C 0.125 3.875 17 N -0.521 5.521 18 C 0.186 3.814 19 C -0.139 4.139 20 C -0.073 4.073 21 C -0.122 4.122 22 C -0.087 4.087 23 C -0.148 4.148 24 C -0.009 4.009 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.112 4.112 28 C -0.131 4.131 29 H 0.248 0.752 30 H 0.376 0.624 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.405 0.595 34 H 0.155 0.845 35 H 0.211 0.789 36 H 0.179 0.821 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -12.302 15.499 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.254 4.254 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.229 1.229 7 C -0.347 4.347 8 H 0.082 0.918 9 N -0.356 5.356 10 C 0.094 3.906 11 C 0.001 3.999 12 N -0.339 5.339 13 C 0.346 3.654 14 O -0.458 6.458 15 C -0.205 4.205 16 C -0.019 4.019 17 N -0.229 5.229 18 C 0.015 3.985 19 C -0.141 4.141 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.166 4.166 24 C -0.015 4.015 25 C -0.159 4.159 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.171 4.171 29 H 0.057 0.943 30 H 0.210 0.790 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.242 0.758 34 H 0.172 0.828 35 H 0.228 0.772 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.898 -12.189 15.231 19.600 hybrid contribution 0.653 1.494 -0.599 1.737 sum 2.551 -10.695 14.632 18.302 Atomic orbital electron populations 1.69750 1.05841 1.25413 1.59891 1.25200 0.96035 0.99751 1.04447 0.85469 0.78333 0.81985 0.76412 1.20038 1.22079 1.22941 1.19268 0.90850 0.84964 1.39618 0.91776 1.42659 1.05861 1.00243 1.86792 1.20725 0.92061 0.86477 0.91331 1.21832 0.92487 0.99399 0.86156 1.45717 1.14105 1.69253 1.04807 1.18124 0.87080 0.76931 0.83261 1.90560 1.18030 1.51909 1.85263 1.21894 0.95549 1.09373 0.93649 1.22824 0.88622 0.91704 0.98708 1.67195 1.39015 1.15912 1.00798 1.24082 0.93438 0.87387 0.93553 1.19344 0.95033 1.04518 0.95185 1.21467 0.97400 0.96395 0.93999 1.21419 0.93119 0.98535 1.00880 1.21525 1.01611 0.95689 0.91789 1.21683 0.95198 1.00587 0.99116 1.19180 0.95054 0.96429 0.90793 1.22386 0.98503 0.95430 0.99608 1.22295 1.00577 0.97291 0.94782 1.22353 0.98522 0.96890 0.97199 1.22779 0.98192 0.99597 0.96577 0.94307 0.79047 0.91036 0.94593 0.75843 0.82804 0.77214 0.80393 0.81602 0.83318 0.84468 0.90991 0.91948 0.90241 0.90696 0.93138 0.90251 0.93224 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.15 13.07 21.65 0.28 -55.86 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.95 46.69 29.55 68.60 2.03 48.71 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 7 C -0.21 -11.25 8.39 84.04 0.71 -10.55 16 8 H 0.06 3.41 7.23 -2.91 -0.02 3.39 16 9 N -0.71 -32.45 4.64 -300.06 -1.39 -33.84 16 10 C 0.18 6.63 0.68 4.32 0.00 6.64 16 11 C 0.13 4.75 3.98 86.38 0.34 5.09 16 12 N -0.69 -25.78 5.05 -466.34 -2.36 -28.13 16 13 C 0.56 21.61 7.77 86.67 0.67 22.28 16 14 O -0.57 -24.36 13.74 -4.04 -0.06 -24.42 16 15 C -0.20 -6.95 6.07 -18.59 -0.11 -7.06 16 16 C 0.13 4.12 10.71 84.81 0.91 5.02 16 17 N -0.52 -15.34 10.22 -193.72 -1.98 -17.32 16 18 C 0.19 4.08 11.00 85.31 0.94 5.02 16 19 C -0.14 -3.22 5.74 -21.33 -0.12 -3.34 16 20 C -0.07 -1.09 9.82 22.33 0.22 -0.87 16 21 C -0.12 -1.77 9.94 22.05 0.22 -1.55 16 22 C -0.09 -1.76 9.96 22.10 0.22 -1.54 16 23 C -0.15 -4.35 9.32 22.20 0.21 -4.14 16 24 C -0.01 -0.29 5.90 -19.94 -0.12 -0.41 16 25 C -0.12 -3.57 5.92 31.32 0.19 -3.39 16 26 C -0.11 -2.73 6.83 31.67 0.22 -2.51 16 27 C -0.11 -3.12 6.91 31.89 0.22 -2.90 16 28 C -0.13 -4.39 5.95 31.67 0.19 -4.21 16 29 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.38 18.37 7.28 -92.71 -0.68 17.69 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.04 1.55 7.46 -2.39 -0.02 1.54 16 33 H 0.40 14.95 6.10 -92.71 -0.57 14.39 16 34 H 0.15 5.03 6.44 -2.91 -0.02 5.01 16 35 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.14 4.75 5.24 -2.91 -0.02 4.73 16 40 H 0.07 1.97 7.54 -2.39 -0.02 1.95 16 41 H 0.06 1.94 7.44 -2.38 -0.02 1.93 16 42 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 1.95 7.16 -2.39 -0.02 1.93 16 47 H 0.07 2.10 7.86 -2.38 -0.02 2.08 16 Total: -1.00 -70.55 378.99 1.66 -68.89 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -0.23 Total: 43.34 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.36 Total: -1.36 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -5.44 Total: -135.16 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -70.55 1.66 -68.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270826720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.333 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds