Wall clock time and date at job start Sat Apr 11 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47160 * 299.99839 * 3 2 1 6 6 H 1.48505 * 109.46892 * 59.99639 * 3 2 1 7 7 C 1.38808 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99972 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46884 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.05633 * 53.58233 * 11 10 9 13 13 C 1.54261 * 110.03426 * 292.16459 * 11 10 9 14 14 C 1.54889 * 104.19818 * 217.10845 * 13 11 10 15 15 C 1.54885 * 102.74890 * 37.94148 * 14 13 11 16 16 C 1.53880 * 110.02927 * 175.00029 * 11 10 9 17 17 H 1.09004 * 110.06822 * 238.59042 * 16 11 10 18 18 N 1.46499 * 110.03293 * 359.97438 * 16 11 10 19 19 C 1.34777 * 119.99665 * 203.89938 * 18 16 11 20 20 O 1.21603 * 120.00257 * 359.72088 * 19 18 16 21 21 C 1.47438 * 119.99608 * 179.72398 * 19 18 16 22 22 C 1.38741 * 120.33136 * 359.71971 * 21 19 18 23 23 C 1.38872 * 120.72049 * 179.74451 * 22 21 19 24 24 C 1.36348 * 121.05758 * 0.55762 * 23 22 21 25 25 C 1.40437 * 120.08685 * 359.70374 * 24 23 22 26 26 C 1.40810 * 121.26663 * 180.02562 * 25 24 23 27 27 C 1.36625 * 118.15580 * 180.02562 * 26 25 24 28 28 C 1.39230 * 119.90886 * 359.97438 * 27 26 25 29 29 N 1.31228 * 121.69648 * 0.02562 * 28 27 26 30 30 C 1.33347 * 121.35327 * 359.97438 * 29 28 27 31 31 H 0.97005 * 120.00167 * 0.02562 * 1 2 3 32 32 H 0.96991 * 119.99734 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.47258 * 59.99819 * 10 9 7 34 34 H 1.09004 * 109.46703 * 299.99861 * 10 9 7 35 35 H 1.09004 * 110.48747 * 98.42527 * 13 11 10 36 36 H 1.09002 * 110.48689 * 335.78851 * 13 11 10 37 37 H 1.09005 * 110.75684 * 279.62607 * 14 13 11 38 38 H 1.09004 * 110.75938 * 156.26065 * 14 13 11 39 39 H 1.08998 * 110.48912 * 203.38269 * 15 14 13 40 40 H 1.08994 * 110.48707 * 80.73654 * 15 14 13 41 41 H 0.97001 * 119.99790 * 23.61651 * 18 16 11 42 42 H 1.08001 * 119.63957 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.47090 * 180.26215 * 23 22 21 44 44 H 1.08005 * 119.95492 * 179.72143 * 24 23 22 45 45 H 1.08001 * 120.91966 * 0.02562 * 26 25 24 46 46 H 1.08005 * 120.04611 * 179.97438 * 27 26 25 47 47 H 1.08001 * 119.15458 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3590 -4.7086 -0.8243 13 6 0.3041 -4.8663 1.3418 14 6 0.1412 -6.3787 1.6338 15 6 1.4870 -6.9683 1.1436 16 6 1.8158 -6.1562 -0.1261 17 1 1.4769 -6.6941 -1.0116 18 7 3.2583 -5.9144 -0.2083 19 6 4.0626 -6.8272 -0.7884 20 8 3.5915 -7.8538 -1.2390 21 6 5.5136 -6.5811 -0.8765 22 6 6.0576 -5.4097 -0.3698 23 6 7.4238 -5.1720 -0.4437 24 6 8.2645 -6.0748 -1.0245 25 6 7.7551 -7.2712 -1.5549 26 6 8.6007 -8.2210 -2.1595 27 6 8.0373 -9.3628 -2.6550 28 6 6.6628 -9.5597 -2.5528 29 7 5.8791 -8.6713 -1.9883 30 6 6.3661 -7.5365 -1.4852 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0002 33 1 2.6846 -3.7146 0.8905 34 1 2.6845 -3.7146 -0.8895 35 1 -0.6712 -4.3892 1.2449 36 1 0.8879 -4.3868 2.1275 37 1 -0.6919 -6.7941 1.0667 38 1 0.0086 -6.5540 2.7014 39 1 1.3750 -8.0253 0.9020 40 1 2.2618 -6.8283 1.8972 41 1 3.6341 -5.0955 0.1511 42 1 5.4121 -4.6768 0.0913 43 1 7.8263 -4.2551 -0.0390 44 1 9.3236 -5.8697 -1.0763 45 1 9.6650 -8.0516 -2.2296 46 1 8.6574 -10.1117 -3.1254 47 1 6.2303 -10.4666 -2.9490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272278854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:43 Heat of formation + Delta-G solvation = 37.350899 kcal Electronic energy + Delta-G solvation = -28894.875715 eV Core-core repulsion = 25042.727600 eV Total energy + Delta-G solvation = -3852.148115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16931 -39.77041 -37.87045 -37.06809 -34.36464 -33.68407 -33.43017 -31.40960 -30.76510 -30.45710 -28.54422 -27.37115 -24.81053 -24.56741 -23.68509 -23.32974 -22.47616 -20.65773 -20.30155 -19.05111 -18.44013 -18.00399 -17.18365 -16.90434 -16.30177 -15.72299 -15.13423 -15.02191 -14.92073 -14.58580 -14.49063 -14.14869 -14.11387 -13.70224 -13.54672 -13.26975 -13.23065 -12.96505 -12.85202 -12.34806 -12.13126 -11.96570 -11.61504 -11.56411 -11.26802 -10.89576 -10.82579 -10.75606 -10.70081 -10.44406 -10.35816 -10.26148 -9.97721 -9.93246 -9.71043 -9.22422 -9.05256 -8.94204 -8.77963 -8.47102 -6.95320 -5.79396 -3.08262 -0.06363 0.57963 1.54275 2.56520 3.25716 3.28742 3.40806 3.45796 3.48561 4.00401 4.07424 4.31015 4.45918 4.53714 4.57331 4.63952 4.73250 4.82432 4.87391 4.89550 5.04256 5.16084 5.21025 5.40500 5.50108 5.54389 5.61758 5.67454 5.69672 5.71855 5.78856 5.82760 5.90978 5.94216 5.97654 6.08239 6.11326 6.21392 6.22777 6.24406 6.36632 6.47246 6.53444 6.60875 6.66384 6.78171 6.86234 7.65471 7.69808 7.85153 8.39054 8.46720 9.50659 10.08372 10.43155 11.43437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.003096 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.441548 B = 9043.042313 C =11072.213145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.157 3.843 11 C -0.108 4.108 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.152 3.848 17 H 0.089 0.911 18 N -0.721 5.721 19 C 0.551 3.449 20 O -0.505 6.505 21 C -0.107 4.107 22 C -0.060 4.060 23 C -0.122 4.122 24 C -0.075 4.075 25 C -0.112 4.112 26 C -0.059 4.059 27 C -0.177 4.177 28 C 0.129 3.871 29 N -0.436 5.436 30 C 0.162 3.838 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.016 0.984 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.403 0.597 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.051 -18.066 -0.693 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.029 3.971 11 C -0.127 4.127 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.047 3.953 17 H 0.107 0.893 18 N -0.377 5.377 19 C 0.337 3.663 20 O -0.380 6.380 21 C -0.111 4.111 22 C -0.080 4.080 23 C -0.140 4.140 24 C -0.093 4.093 25 C -0.114 4.114 26 C -0.085 4.085 27 C -0.197 4.197 28 C -0.044 4.044 29 N -0.143 5.143 30 C 0.039 3.961 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.242 0.758 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.886 -18.739 -0.916 23.950 hybrid contribution 1.348 1.614 0.048 2.103 sum 16.234 -17.126 -0.868 23.613 Atomic orbital electron populations 1.69669 1.05110 1.25561 1.57640 1.24740 0.95514 0.97688 1.02969 0.86135 0.78744 0.84195 0.77203 1.20574 1.21872 1.21875 1.19244 0.90986 0.84160 1.42774 0.91204 1.42333 1.05917 0.99698 1.89288 1.20691 0.93478 0.85744 0.97196 1.22218 0.97964 0.93507 0.99037 0.89938 1.22355 1.00734 0.95132 0.96659 1.22492 0.96874 0.96286 1.00596 1.22757 0.97669 0.99443 0.97096 1.21619 0.78991 0.95922 0.98780 0.89310 1.46355 1.07948 1.22731 1.60623 1.17927 0.85536 0.83992 0.78836 1.90821 1.75629 1.25688 1.45843 1.19975 0.93842 0.94886 1.02353 1.21580 0.95900 0.95207 0.95345 1.20899 0.93049 1.00153 0.99849 1.21163 1.00217 0.92260 0.95708 1.18841 0.94057 0.96708 1.01809 1.21452 0.99810 0.92724 0.94518 1.21949 0.96942 0.98838 1.01991 1.23178 0.90132 0.97690 0.93384 1.68328 1.37844 1.00782 1.07308 1.18611 0.89637 0.92243 0.95656 0.93532 0.78122 0.96602 0.96140 0.91216 0.91049 0.91568 0.91697 0.91468 0.91426 0.75793 0.84454 0.84524 0.84847 0.84321 0.84533 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.84 5.45 -59.91 -0.33 -18.17 16 10 C 0.16 3.00 4.18 -4.04 -0.02 2.98 16 11 C -0.11 -1.75 2.96 -89.50 -0.26 -2.02 16 12 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.11 -1.69 6.08 -25.08 -0.15 -1.84 16 14 C -0.12 -1.58 6.91 -24.74 -0.17 -1.75 16 15 C -0.13 -1.76 6.53 -25.07 -0.16 -1.92 16 16 C 0.15 2.27 3.21 -66.81 -0.21 2.05 16 17 H 0.09 1.42 7.60 -51.93 -0.39 1.03 16 18 N -0.72 -10.61 4.38 -53.79 -0.24 -10.85 16 19 C 0.55 8.92 7.76 -12.51 -0.10 8.83 16 20 O -0.50 -9.65 14.86 5.27 0.08 -9.57 16 21 C -0.11 -1.52 5.91 -104.61 -0.62 -2.14 16 22 C -0.06 -0.68 9.52 -39.16 -0.37 -1.05 16 23 C -0.12 -1.12 9.93 -40.03 -0.40 -1.52 16 24 C -0.07 -0.65 9.75 -39.43 -0.38 -1.04 16 25 C -0.11 -1.21 5.74 -106.82 -0.61 -1.83 16 26 C -0.06 -0.48 9.90 -39.19 -0.39 -0.87 16 27 C -0.18 -1.41 10.03 -39.80 -0.40 -1.81 16 28 C 0.13 1.37 11.15 -17.44 -0.19 1.17 16 29 N -0.44 -6.47 8.44 -10.76 -0.09 -6.56 16 30 C 0.16 2.28 6.61 -84.58 -0.56 1.72 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.38 10.01 7.55 -40.82 -0.31 9.70 16 33 H 0.02 0.30 7.12 -51.93 -0.37 -0.07 16 34 H 0.02 0.41 7.40 -51.93 -0.38 0.02 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.16 7.76 -51.93 -0.40 0.76 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 41 H 0.40 5.53 3.86 -40.82 -0.16 5.38 16 42 H 0.14 1.40 6.37 -52.49 -0.33 1.07 16 43 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 45 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 46 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 47 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -34.66 381.54 -10.92 -45.58 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.54 Total: 12.09 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -5.25 Total: -8.17 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.07 Total: -62.67 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.66 -10.92 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272278854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.927 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds