Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47160 * 299.99839 * 3 2 1 6 6 H 1.48505 * 109.46892 * 59.99639 * 3 2 1 7 7 C 1.38808 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99972 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46884 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.05633 * 53.58233 * 11 10 9 13 13 C 1.54261 * 110.03426 * 292.16459 * 11 10 9 14 14 C 1.54889 * 104.19818 * 217.10845 * 13 11 10 15 15 C 1.54885 * 102.74890 * 37.94148 * 14 13 11 16 16 C 1.53880 * 110.02927 * 175.00029 * 11 10 9 17 17 H 1.09004 * 110.06822 * 238.59042 * 16 11 10 18 18 N 1.46499 * 110.03293 * 359.97438 * 16 11 10 19 19 C 1.34777 * 119.99665 * 203.89938 * 18 16 11 20 20 O 1.21603 * 120.00257 * 359.72088 * 19 18 16 21 21 C 1.47438 * 119.99608 * 179.72398 * 19 18 16 22 22 C 1.38741 * 120.33136 * 359.71971 * 21 19 18 23 23 C 1.38872 * 120.72049 * 179.74451 * 22 21 19 24 24 C 1.36348 * 121.05758 * 0.55762 * 23 22 21 25 25 C 1.40437 * 120.08685 * 359.70374 * 24 23 22 26 26 C 1.40810 * 121.26663 * 180.02562 * 25 24 23 27 27 C 1.36625 * 118.15580 * 180.02562 * 26 25 24 28 28 C 1.39230 * 119.90886 * 359.97438 * 27 26 25 29 29 N 1.31228 * 121.69648 * 0.02562 * 28 27 26 30 30 C 1.33347 * 121.35327 * 359.97438 * 29 28 27 31 31 H 0.97005 * 120.00167 * 0.02562 * 1 2 3 32 32 H 0.96991 * 119.99734 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.47258 * 59.99819 * 10 9 7 34 34 H 1.09004 * 109.46703 * 299.99861 * 10 9 7 35 35 H 1.09004 * 110.48747 * 98.42527 * 13 11 10 36 36 H 1.09002 * 110.48689 * 335.78851 * 13 11 10 37 37 H 1.09005 * 110.75684 * 279.62607 * 14 13 11 38 38 H 1.09004 * 110.75938 * 156.26065 * 14 13 11 39 39 H 1.08998 * 110.48912 * 203.38269 * 15 14 13 40 40 H 1.08994 * 110.48707 * 80.73654 * 15 14 13 41 41 H 0.97001 * 119.99790 * 23.61651 * 18 16 11 42 42 H 1.08001 * 119.63957 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.47090 * 180.26215 * 23 22 21 44 44 H 1.08005 * 119.95492 * 179.72143 * 24 23 22 45 45 H 1.08001 * 120.91966 * 0.02562 * 26 25 24 46 46 H 1.08005 * 120.04611 * 179.97438 * 27 26 25 47 47 H 1.08001 * 119.15458 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3590 -4.7086 -0.8243 13 6 0.3041 -4.8663 1.3418 14 6 0.1412 -6.3787 1.6338 15 6 1.4870 -6.9683 1.1436 16 6 1.8158 -6.1562 -0.1261 17 1 1.4769 -6.6941 -1.0116 18 7 3.2583 -5.9144 -0.2083 19 6 4.0626 -6.8272 -0.7884 20 8 3.5915 -7.8538 -1.2390 21 6 5.5136 -6.5811 -0.8765 22 6 6.0576 -5.4097 -0.3698 23 6 7.4238 -5.1720 -0.4437 24 6 8.2645 -6.0748 -1.0245 25 6 7.7551 -7.2712 -1.5549 26 6 8.6007 -8.2210 -2.1595 27 6 8.0373 -9.3628 -2.6550 28 6 6.6628 -9.5597 -2.5528 29 7 5.8791 -8.6713 -1.9883 30 6 6.3661 -7.5365 -1.4852 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0002 33 1 2.6846 -3.7146 0.8905 34 1 2.6845 -3.7146 -0.8895 35 1 -0.6712 -4.3892 1.2449 36 1 0.8879 -4.3868 2.1275 37 1 -0.6919 -6.7941 1.0667 38 1 0.0086 -6.5540 2.7014 39 1 1.3750 -8.0253 0.9020 40 1 2.2618 -6.8283 1.8972 41 1 3.6341 -5.0955 0.1511 42 1 5.4121 -4.6768 0.0913 43 1 7.8263 -4.2551 -0.0390 44 1 9.3236 -5.8697 -1.0763 45 1 9.6650 -8.0516 -2.2296 46 1 8.6574 -10.1117 -3.1254 47 1 6.2303 -10.4666 -2.9490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272278854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 15.757934 kcal Electronic energy + Delta-G solvation = -28895.812056 eV Core-core repulsion = 25042.727600 eV Total energy + Delta-G solvation = -3853.084456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01853 -40.93031 -39.09014 -37.90674 -36.21768 -34.77738 -34.32134 -33.29643 -31.52248 -31.29053 -30.17209 -28.52739 -26.36874 -25.57633 -24.47827 -24.24890 -24.19493 -21.75613 -21.43223 -20.39811 -19.36094 -19.24036 -18.66911 -17.78810 -17.34277 -16.84318 -16.54112 -16.34659 -16.04534 -15.69782 -15.55528 -15.28681 -15.20287 -14.94520 -14.85341 -14.74357 -14.44990 -14.03018 -13.84778 -13.48569 -13.12082 -13.08225 -12.88070 -12.79966 -12.70201 -12.37367 -12.27110 -12.11104 -11.94236 -11.78345 -11.73169 -11.55408 -11.48530 -11.45245 -11.07296 -10.93624 -10.12871 -10.04082 -9.81219 -9.28283 -8.99134 -7.93399 -5.22355 -0.83888 -0.17346 0.76133 1.48995 1.49771 1.59555 1.77274 2.14123 2.23785 2.57119 3.16474 3.32830 3.39125 3.42634 3.59954 3.67579 3.75385 3.84638 3.86978 3.96104 4.06118 4.15497 4.19187 4.37332 4.41836 4.42951 4.50090 4.52486 4.55997 4.65414 4.69254 4.74972 4.90385 4.91746 4.96833 4.97525 5.07187 5.10637 5.20768 5.21583 5.25809 5.34068 5.35962 5.47281 5.50938 5.53769 5.59951 5.83663 6.27996 6.52811 7.07096 7.27824 7.35092 8.09658 8.33563 9.30479 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.003096 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.441548 B = 9043.042313 C =11072.213145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.740 5.740 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.071 0.929 13 C -0.108 4.108 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.074 0.926 18 N -0.717 5.717 19 C 0.549 3.451 20 O -0.546 6.546 21 C -0.151 4.151 22 C -0.053 4.053 23 C -0.133 4.133 24 C -0.053 4.053 25 C -0.131 4.131 26 C -0.050 4.050 27 C -0.175 4.175 28 C 0.119 3.881 29 N -0.497 5.497 30 C 0.133 3.867 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.407 0.593 42 H 0.141 0.859 43 H 0.167 0.833 44 H 0.177 0.823 45 H 0.182 0.818 46 H 0.176 0.824 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.822 -18.306 -0.370 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.034 3.966 11 C -0.120 4.120 12 H 0.089 0.911 13 C -0.146 4.146 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.051 3.949 17 H 0.092 0.908 18 N -0.372 5.372 19 C 0.337 3.663 20 O -0.424 6.424 21 C -0.155 4.155 22 C -0.073 4.073 23 C -0.151 4.151 24 C -0.072 4.072 25 C -0.133 4.133 26 C -0.075 4.075 27 C -0.194 4.194 28 C -0.052 4.052 29 N -0.205 5.205 30 C 0.010 3.990 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.247 0.753 42 H 0.159 0.841 43 H 0.184 0.816 44 H 0.194 0.806 45 H 0.200 0.800 46 H 0.193 0.807 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 18.700 -18.999 -0.583 26.664 hybrid contribution 0.293 1.581 -0.115 1.612 sum 18.993 -17.417 -0.698 25.779 Atomic orbital electron populations 1.69829 1.06695 1.25932 1.59641 1.25568 0.96359 1.01124 1.03813 0.85089 0.78498 0.79826 0.76455 1.18547 1.22464 1.22160 1.19693 0.91659 0.85127 1.40866 0.90168 1.42531 1.05652 1.00892 1.89211 1.20795 0.93821 0.84673 0.97358 1.22108 0.97348 0.93009 0.99486 0.91072 1.22288 0.99798 0.97001 0.95482 1.22443 0.96637 0.93929 1.01952 1.22687 0.98226 0.99139 0.96144 1.21529 0.79162 0.95093 0.99160 0.90766 1.46299 1.07690 1.22745 1.60435 1.18370 0.86735 0.83371 0.77862 1.90775 1.76580 1.27287 1.47734 1.19932 0.92599 0.96998 1.05937 1.21764 0.97378 0.94036 0.94134 1.21246 0.91942 1.01621 1.00295 1.21671 1.02133 0.90552 0.92812 1.19193 0.93049 0.98413 1.02648 1.21982 1.01473 0.91597 0.92480 1.22311 0.95886 0.99794 1.01428 1.23670 0.91718 0.97472 0.92377 1.68247 1.40091 1.02302 1.09827 1.18899 0.91358 0.92308 0.96414 0.94106 0.79382 0.95191 0.96410 0.92083 0.91948 0.90558 0.89785 0.91426 0.91136 0.75315 0.84109 0.81568 0.80591 0.80041 0.80652 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -36.80 5.45 -343.45 -1.87 -38.67 16 10 C 0.16 6.19 4.18 86.38 0.36 6.55 16 11 C -0.10 -3.33 2.96 -10.07 -0.03 -3.36 16 12 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.11 -3.29 6.08 31.67 0.19 -3.10 16 14 C -0.11 -2.73 6.91 31.88 0.22 -2.51 16 15 C -0.12 -3.30 6.53 31.67 0.21 -3.09 16 16 C 0.16 4.81 3.21 45.72 0.15 4.96 16 17 H 0.07 2.52 7.60 -2.38 -0.02 2.50 16 18 N -0.72 -21.94 4.38 -442.34 -1.94 -23.88 16 19 C 0.55 18.85 7.76 86.67 0.67 19.52 16 20 O -0.55 -22.39 14.86 -4.04 -0.06 -22.45 16 21 C -0.15 -4.46 5.91 -19.86 -0.12 -4.57 16 22 C -0.05 -1.18 9.52 22.54 0.21 -0.96 16 23 C -0.13 -2.12 9.93 21.98 0.22 -1.90 16 24 C -0.05 -0.74 9.75 22.36 0.22 -0.52 16 25 C -0.13 -2.57 5.74 -21.29 -0.12 -2.70 16 26 C -0.05 -0.64 9.90 22.52 0.22 -0.41 16 27 C -0.17 -2.30 10.03 22.13 0.22 -2.08 16 28 C 0.12 2.51 11.15 85.02 0.95 3.46 16 29 N -0.50 -15.40 8.44 -187.97 -1.59 -16.99 16 30 C 0.13 3.83 6.61 40.61 0.27 4.10 16 31 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 32 H 0.37 20.02 7.55 -92.71 -0.70 19.32 16 33 H 0.03 1.10 7.12 -2.39 -0.02 1.09 16 34 H 0.02 0.72 7.40 -2.38 -0.02 0.70 16 35 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 2.02 7.76 -2.39 -0.02 2.00 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 41 H 0.41 11.44 3.86 -92.71 -0.36 11.09 16 42 H 0.14 2.85 6.37 -2.91 -0.02 2.83 16 43 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 44 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 45 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 46 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -79.17 381.54 1.95 -77.21 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.05 Total: 39.01 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.15 Total: -2.78 kcal Atomic # 7 Polarization: -133.18 SS G_CDS: -5.11 Total: -138.29 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.17 1.95 -77.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272278854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.972 kcal (2) G-P(sol) polarization free energy of solvation -79.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds