Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00024 * 2 1 4 4 H 1.48505 * 109.47484 * 270.00289 * 3 2 1 5 5 H 1.48506 * 109.47270 * 30.00437 * 3 2 1 6 6 H 1.48500 * 109.47230 * 150.00416 * 3 2 1 7 7 C 1.38817 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99522 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99675 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46916 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.54356 * 307.61807 * 11 10 9 13 13 C 1.54888 * 110.48377 * 70.22877 * 11 10 9 14 14 C 1.54891 * 102.74964 * 156.61907 * 13 11 10 15 15 C 1.54269 * 104.19526 * 322.05744 * 14 13 11 16 16 C 1.53876 * 106.59675 * 23.60913 * 15 14 13 17 17 H 1.09002 * 110.02801 * 240.66594 * 16 15 14 18 18 N 1.46503 * 110.03417 * 119.28735 * 16 15 14 19 19 C 1.34778 * 119.99771 * 86.44633 * 18 16 15 20 20 O 1.21598 * 120.00390 * 0.02562 * 19 18 16 21 21 C 1.47433 * 119.99532 * 180.02562 * 19 18 16 22 22 C 1.38743 * 120.33714 * 359.97438 * 21 19 18 23 23 C 1.38861 * 120.73154 * 179.97438 * 22 21 19 24 24 C 1.36357 * 121.05398 * 0.06582 * 23 22 21 25 25 C 1.40440 * 120.08523 * 359.95663 * 24 23 22 26 26 C 1.40802 * 121.26149 * 180.02562 * 25 24 23 27 27 C 1.36632 * 118.15057 * 180.02562 * 26 25 24 28 28 C 1.39230 * 119.91502 * 0.03657 * 27 26 25 29 29 N 1.31234 * 121.69004 * 359.94115 * 28 27 26 30 30 C 1.33354 * 121.35197 * 0.03682 * 29 28 27 31 31 H 0.97003 * 119.99808 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00423 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47012 * 60.00539 * 10 9 7 34 34 H 1.08996 * 109.47418 * 299.99708 * 10 9 7 35 35 H 1.08997 * 110.76024 * 38.30411 * 13 11 10 36 36 H 1.09004 * 110.91408 * 275.00651 * 13 11 10 37 37 H 1.08996 * 110.48803 * 203.37652 * 14 13 11 38 38 H 1.09006 * 110.48522 * 80.73217 * 14 13 11 39 39 H 1.08999 * 110.02964 * 264.32492 * 15 14 13 40 40 H 1.08996 * 110.02984 * 142.89159 * 15 14 13 41 41 H 0.97000 * 119.99634 * 266.45601 * 18 16 15 42 42 H 1.08003 * 119.63227 * 359.97438 * 22 21 19 43 43 H 1.07997 * 119.47832 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.95448 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.92629 * 359.97438 * 26 25 24 46 46 H 1.08005 * 120.04181 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.15778 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3420 -4.7054 0.8088 13 6 0.3380 -4.9130 -1.3650 14 6 -0.1127 -6.3942 -1.4120 15 6 1.0592 -7.1667 -0.7717 16 6 1.8072 -6.1656 0.1261 17 1 2.8373 -6.0572 -0.2132 18 7 1.7831 -6.6239 1.5174 19 6 2.7266 -7.4774 1.9621 20 8 3.5981 -7.8667 1.2088 21 6 2.7020 -7.9390 3.3621 22 6 1.7111 -7.4988 4.2278 23 6 1.6798 -7.9287 5.5478 24 6 2.6196 -8.7916 6.0290 25 6 3.6406 -9.2617 5.1871 26 6 4.6232 -10.1535 5.6578 27 6 5.5876 -10.5698 4.7840 28 6 5.5787 -10.1107 3.4696 29 7 4.6601 -9.2798 3.0358 30 6 3.6915 -8.8361 3.8378 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6847 -3.7145 0.8895 34 1 2.6847 -3.7146 -0.8905 35 1 1.0235 -4.6918 -2.1830 36 1 -0.5236 -4.2460 -1.3940 37 1 -0.2630 -6.7147 -2.4429 38 1 -1.0245 -6.5341 -0.8312 39 1 1.7260 -7.5434 -1.5472 40 1 0.6781 -7.9934 -0.1723 41 1 1.0879 -6.3131 2.1184 42 1 0.9558 -6.8142 3.8710 43 1 0.8990 -7.5736 6.2040 44 1 2.5785 -9.1142 7.0590 45 1 4.6154 -10.4982 6.6812 46 1 6.3559 -11.2541 5.1125 47 1 6.3465 -10.4480 2.7892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272278855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = 29.709302 kcal Electronic energy + Delta-G solvation = -28480.562923 eV Core-core repulsion = 24628.083443 eV Total energy + Delta-G solvation = -3852.479479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21997 -39.68327 -37.86954 -37.12583 -34.43409 -33.72546 -33.40745 -31.36312 -30.83152 -30.51651 -28.54602 -27.43987 -24.94203 -24.45440 -23.74687 -23.36229 -22.03366 -20.90079 -19.97223 -19.66031 -18.49685 -17.92717 -17.18865 -16.93243 -16.21297 -16.14051 -15.17693 -15.02758 -14.83592 -14.57528 -14.43730 -14.21418 -13.92673 -13.73432 -13.60887 -13.28535 -13.15209 -13.07489 -12.79480 -12.42703 -12.06741 -12.02979 -11.69621 -11.64345 -11.28583 -10.91544 -10.79761 -10.77283 -10.70876 -10.40995 -10.32431 -10.27608 -10.00795 -9.94111 -9.67122 -9.27036 -9.11863 -8.86944 -8.83448 -8.54086 -6.88222 -5.73994 -3.01770 -0.13021 0.51521 1.48595 2.49239 3.18943 3.22222 3.45764 3.51041 3.52647 3.94332 4.01546 4.24345 4.39772 4.49184 4.57678 4.58824 4.67954 4.78165 4.81681 4.90764 4.96866 5.10926 5.14642 5.34413 5.51963 5.55512 5.59492 5.60869 5.68484 5.70184 5.75172 5.85309 5.85746 5.87933 5.98828 6.00171 6.12229 6.14965 6.25372 6.29545 6.35659 6.46773 6.57554 6.60823 6.69142 6.83914 6.97108 7.62163 7.73836 7.80016 8.40821 8.45383 9.56672 10.14718 10.50057 11.49035 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012725 B = 0.002543 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.941704 B =11009.723782 C =11893.288035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.101 4.101 12 H 0.078 0.922 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.149 3.851 17 H 0.093 0.907 18 N -0.720 5.720 19 C 0.551 3.449 20 O -0.500 6.500 21 C -0.105 4.105 22 C -0.062 4.062 23 C -0.124 4.124 24 C -0.074 4.074 25 C -0.112 4.112 26 C -0.059 4.059 27 C -0.176 4.176 28 C 0.130 3.870 29 N -0.436 5.436 30 C 0.161 3.839 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.396 0.604 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -24.509 12.166 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.120 4.120 12 H 0.097 0.903 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.045 3.955 17 H 0.111 0.889 18 N -0.372 5.372 19 C 0.337 3.663 20 O -0.374 6.374 21 C -0.109 4.109 22 C -0.083 4.083 23 C -0.142 4.142 24 C -0.093 4.093 25 C -0.114 4.114 26 C -0.085 4.085 27 C -0.196 4.196 28 C -0.042 4.042 29 N -0.143 5.143 30 C 0.038 3.962 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.969 -24.306 10.719 26.859 hybrid contribution -0.183 0.833 1.336 1.585 sum 3.787 -23.473 12.055 26.658 Atomic orbital electron populations 1.69659 1.05066 1.25547 1.58124 1.24719 0.95526 0.97619 1.03219 0.86198 0.78666 0.83880 0.77527 1.21742 1.21816 1.20797 1.19242 0.91048 0.84214 1.42227 0.91274 1.42323 1.05794 0.99881 1.89458 1.20686 0.92935 0.85142 0.97914 1.22421 0.97847 0.93262 0.98517 0.90339 1.22451 1.00475 0.95212 0.96693 1.22389 0.97603 0.95982 1.00276 1.22540 0.97484 0.97917 0.98986 1.21680 1.01129 0.92805 0.79911 0.88897 1.46136 1.30487 1.47550 1.13063 1.17899 0.82101 0.79611 0.86669 1.90842 1.35103 1.55079 1.56362 1.19994 0.96314 0.99695 0.94884 1.21518 0.96454 0.96935 0.93357 1.20867 0.99650 0.98128 0.95535 1.21166 0.92994 0.95839 0.99283 1.18840 0.97847 1.00029 0.94689 1.21456 0.92740 0.94302 1.00050 1.21968 1.00238 1.02106 0.95277 1.23201 0.95610 0.91589 0.93817 1.68344 1.01373 1.08943 1.35607 1.18627 0.93387 0.95043 0.89126 0.93598 0.78296 0.96453 0.96082 0.91069 0.90760 0.91873 0.91919 0.91339 0.91816 0.76904 0.84557 0.84645 0.84860 0.84289 0.84464 0.82295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.54 5.49 -59.91 -0.33 -18.87 16 10 C 0.16 3.32 5.54 -4.04 -0.02 3.30 16 11 C -0.10 -1.62 2.58 -88.96 -0.23 -1.85 16 12 H 0.08 1.23 7.73 -51.93 -0.40 0.83 16 13 C -0.11 -1.68 6.19 -24.74 -0.15 -1.83 16 14 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 15 C -0.13 -1.71 6.59 -25.61 -0.17 -1.88 16 16 C 0.15 2.20 2.79 -66.81 -0.19 2.01 16 17 H 0.09 1.57 7.30 -51.93 -0.38 1.19 16 18 N -0.72 -9.69 4.94 -53.79 -0.27 -9.95 16 19 C 0.55 8.50 7.75 -12.52 -0.10 8.40 16 20 O -0.50 -9.45 14.86 5.28 0.08 -9.37 16 21 C -0.11 -1.38 5.91 -104.61 -0.62 -2.00 16 22 C -0.06 -0.60 9.52 -39.16 -0.37 -0.97 16 23 C -0.12 -0.96 9.93 -40.03 -0.40 -1.36 16 24 C -0.07 -0.57 9.75 -39.43 -0.38 -0.96 16 25 C -0.11 -1.13 5.74 -106.83 -0.61 -1.74 16 26 C -0.06 -0.45 9.90 -39.19 -0.39 -0.84 16 27 C -0.18 -1.33 10.03 -39.79 -0.40 -1.73 16 28 C 0.13 1.35 11.15 -17.44 -0.19 1.15 16 29 N -0.44 -6.31 8.44 -10.76 -0.09 -6.40 16 30 C 0.16 2.17 6.61 -84.58 -0.56 1.61 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.08 7.63 -40.82 -0.31 9.77 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.45 8.02 -51.93 -0.42 0.04 16 35 H 0.07 1.14 7.97 -51.93 -0.41 0.72 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.82 7.92 -51.93 -0.41 0.40 16 41 H 0.40 4.37 6.36 -40.82 -0.26 4.11 16 42 H 0.14 1.03 6.37 -52.48 -0.33 0.69 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 47 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -36.01 386.40 -10.99 -46.99 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.70 Total: 9.48 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -5.20 Total: -7.81 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.04 Total: -62.82 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.01 -10.99 -46.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272278855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.702 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds