Wall clock time and date at job start Sat Apr 11 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99901 * 2 1 4 4 H 1.48499 * 109.47119 * 269.99705 * 3 2 1 5 5 H 1.48504 * 109.47243 * 29.99946 * 3 2 1 6 6 H 1.48504 * 109.47101 * 149.99834 * 3 2 1 7 7 C 1.38813 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00224 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99652 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99857 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47174 * 185.41477 * 10 9 7 12 12 H 1.09007 * 109.70092 * 47.97596 * 11 10 9 13 13 C 1.53192 * 109.58631 * 168.33139 * 11 10 9 14 14 C 1.53039 * 109.31366 * 174.42709 * 13 11 10 15 15 C 1.53047 * 109.53481 * 298.63162 * 14 13 11 16 16 C 1.52767 * 109.37876 * 61.24040 * 15 14 13 17 17 N 1.46921 * 109.01157 * 305.58646 * 16 15 14 18 18 C 1.34778 * 120.63189 * 233.58704 * 17 16 15 19 19 O 1.21589 * 119.99867 * 184.17062 * 18 17 16 20 20 C 1.47568 * 119.99881 * 4.17324 * 18 17 16 21 21 C 1.38709 * 120.43215 * 305.16941 * 20 18 17 22 22 C 1.39002 * 120.74862 * 180.02562 * 21 20 18 23 23 C 1.36341 * 121.19190 * 0.02562 * 22 21 20 24 24 C 1.40354 * 119.93170 * 359.97438 * 23 22 21 25 25 C 1.40686 * 122.10692 * 179.97438 * 24 23 22 26 26 C 1.36266 * 118.66812 * 180.02562 * 25 24 23 27 27 N 1.32514 * 121.83988 * 0.02562 * 26 25 24 28 28 C 1.31318 * 122.71853 * 359.95587 * 27 26 25 29 29 C 1.40138 * 119.91893 * 0.05034 * 28 27 26 30 30 H 0.96998 * 120.00022 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00121 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46908 * 65.41452 * 10 9 7 33 33 H 1.08998 * 109.47145 * 305.42034 * 10 9 7 34 34 H 1.09008 * 109.49453 * 294.37119 * 13 11 10 35 35 H 1.08995 * 109.49645 * 54.46770 * 13 11 10 36 36 H 1.09000 * 109.46042 * 58.64978 * 14 13 11 37 37 H 1.08998 * 109.46269 * 178.62985 * 14 13 11 38 38 H 1.08996 * 109.49704 * 181.31385 * 15 14 13 39 39 H 1.08993 * 109.49783 * 301.38309 * 15 14 13 40 40 H 1.09000 * 109.50376 * 185.70678 * 16 15 14 41 41 H 1.08999 * 109.43436 * 65.42913 * 16 15 14 42 42 H 1.07992 * 119.62294 * 359.74236 * 21 20 18 43 43 H 1.08000 * 119.40163 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.03387 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.66605 * 0.02562 * 25 24 23 46 46 H 1.07995 * 119.07827 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.03710 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0011 11 6 5.6109 -2.1944 0.1364 12 1 5.7824 -1.4881 0.9488 13 6 6.3502 -3.5037 0.4294 14 6 7.8586 -3.2450 0.4256 15 6 8.2888 -2.7461 -0.9558 16 6 7.5718 -1.4334 -1.2666 17 7 6.1236 -1.6329 -1.1208 18 6 5.2818 -1.3122 -2.1234 19 8 4.0805 -1.4105 -1.9634 20 6 5.8182 -0.8419 -3.4151 21 6 6.6824 0.2420 -3.4643 22 6 7.1911 0.6908 -4.6775 23 6 6.8576 0.0828 -5.8513 24 6 5.9861 -1.0173 -5.8473 25 6 5.6110 -1.6785 -7.0311 26 6 4.7599 -2.7393 -6.9458 27 7 4.2805 -3.1593 -5.7840 28 6 4.5885 -2.5899 -4.6415 29 6 5.4569 -1.4902 -4.6203 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 3.9232 -3.0003 -0.9327 33 1 3.7784 -3.0824 0.8394 34 1 6.0484 -3.8811 1.4065 35 1 6.1052 -4.2391 -0.3368 36 1 8.0996 -2.4912 1.1752 37 1 8.3863 -4.1700 0.6579 38 1 9.3666 -2.5843 -0.9648 39 1 8.0261 -3.4889 -1.7089 40 1 7.7976 -1.1285 -2.2884 41 1 7.9066 -0.6638 -0.5711 42 1 6.9595 0.7456 -2.5500 43 1 7.8628 1.5365 -4.6904 44 1 7.2642 0.4469 -6.7833 45 1 5.9900 -1.3520 -7.9882 46 1 4.4673 -3.2514 -7.8504 47 1 4.1727 -2.9685 -3.7194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273010583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:49 Heat of formation + Delta-G solvation = 80.657575 kcal Electronic energy + Delta-G solvation = -30699.923202 eV Core-core repulsion = 26849.653005 eV Total energy + Delta-G solvation = -3850.270196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21299 -39.99532 -37.45437 -37.04062 -34.76067 -33.17212 -32.53486 -31.92802 -31.31242 -30.26073 -29.67136 -26.54912 -24.84376 -24.29037 -23.72405 -23.33231 -22.40495 -21.27959 -20.53915 -19.22190 -18.21142 -17.57058 -17.05689 -16.78822 -16.23575 -15.68471 -15.14338 -14.83973 -14.63504 -14.58469 -14.37901 -14.14532 -14.00039 -13.94798 -13.60279 -13.46011 -13.02851 -12.73593 -12.58453 -12.44555 -12.35691 -12.15609 -12.02627 -11.80775 -11.52541 -11.28400 -11.09355 -10.90029 -10.74483 -10.68272 -10.32188 -10.18960 -9.98615 -9.49154 -9.38444 -9.22929 -8.74086 -8.70663 -8.26380 -8.10064 -6.80850 -5.54743 -2.80656 0.13397 0.79047 1.67091 2.80186 3.02951 3.23298 3.47312 3.53774 3.56032 4.00183 4.33105 4.42882 4.55266 4.64375 4.68946 4.73236 4.78201 4.79243 4.83346 4.90554 4.97391 5.01912 5.17177 5.27818 5.34955 5.45343 5.52077 5.56762 5.63322 5.65854 5.71541 5.77689 5.79965 5.83522 5.90079 5.91612 5.98631 6.00904 6.10599 6.13370 6.20806 6.32067 6.48953 6.53428 6.65820 6.77957 7.09112 7.65630 7.98096 8.20630 8.58173 8.64622 9.44631 10.17992 10.38593 11.65189 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.005364 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.796813 B = 5218.596317 C = 6603.311931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.003 4.003 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.283 1.283 7 C -0.209 4.209 8 H 0.087 0.913 9 N -0.720 5.720 10 C 0.166 3.834 11 C 0.138 3.862 12 H 0.071 0.929 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.101 3.899 17 N -0.607 5.607 18 C 0.508 3.492 19 O -0.429 6.429 20 C -0.069 4.069 21 C -0.101 4.101 22 C -0.099 4.099 23 C -0.106 4.106 24 C -0.023 4.023 25 C -0.165 4.165 26 C 0.080 3.920 27 N -0.488 5.488 28 C 0.166 3.834 29 C -0.084 4.084 30 H 0.255 0.745 31 H 0.356 0.644 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.152 0.848 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.784 -3.528 -9.458 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.340 4.340 8 H 0.104 0.896 9 N -0.365 5.365 10 C 0.039 3.961 11 C 0.035 3.965 12 H 0.089 0.911 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.023 4.023 17 N -0.345 5.345 18 C 0.292 3.708 19 O -0.298 6.298 20 C -0.075 4.075 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.029 4.029 25 C -0.185 4.185 26 C -0.064 4.064 27 N -0.196 5.196 28 C -0.005 4.005 29 C -0.087 4.087 30 H 0.065 0.935 31 H 0.189 0.811 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.170 0.830 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 22.271 -4.400 -9.528 24.620 hybrid contribution 1.289 2.249 -0.167 2.598 sum 23.560 -2.150 -9.694 25.567 Atomic orbital electron populations 1.69698 1.04961 1.25193 1.59441 1.24543 0.95076 0.96730 1.03359 0.86539 0.78865 0.85665 0.77389 1.21560 1.22238 1.21018 1.19003 0.80790 0.94346 1.39817 0.89552 1.42569 1.03713 1.01569 1.88623 1.20811 0.86192 0.90338 0.98741 1.21602 0.95849 0.94134 0.84898 0.91074 1.21908 0.94694 0.97408 1.02584 1.21507 0.96100 1.01137 0.96816 1.21837 0.99699 0.97663 0.98027 1.21789 0.80502 0.97387 1.02572 1.47886 1.06189 1.65000 1.15399 1.18325 0.87455 0.81526 0.83447 1.91408 1.12637 1.47065 1.78652 1.20218 0.96760 0.96893 0.93596 1.21393 0.95920 0.95913 0.98753 1.20876 0.99413 0.99482 0.92007 1.21028 0.97472 0.95064 0.98797 1.18104 0.96465 0.95659 0.92640 1.21855 1.00804 0.97950 0.97859 1.22267 0.93822 0.94342 0.95936 1.67550 1.23056 1.30608 0.98395 1.23458 0.90407 0.89753 0.96863 1.18767 0.99505 0.98001 0.92404 0.93526 0.81104 0.94083 0.95339 0.90515 0.91315 0.91846 0.91843 0.91101 0.91582 0.89502 0.91685 0.85020 0.85122 0.85005 0.84516 0.83044 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.44 13.97 55.49 0.78 -30.66 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.88 24.04 27.73 -169.99 -4.71 19.33 16 4 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16 5 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 6 H -0.28 -7.23 6.52 56.52 0.37 -6.87 16 7 C -0.21 -6.28 10.20 -15.06 -0.15 -6.43 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.72 -18.09 2.98 -59.91 -0.18 -18.27 16 10 C 0.17 3.36 4.89 -4.04 -0.02 3.34 16 11 C 0.14 2.10 2.91 -67.60 -0.20 1.90 16 12 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.13 -1.48 5.34 -26.61 -0.14 -1.62 16 14 C -0.12 -1.08 5.89 -26.69 -0.16 -1.23 16 15 C -0.13 -1.18 6.07 -26.83 -0.16 -1.34 16 16 C 0.10 1.04 5.53 -3.93 -0.02 1.02 16 17 N -0.61 -8.78 2.98 -166.69 -0.50 -9.27 16 18 C 0.51 8.85 6.08 -12.45 -0.08 8.77 16 19 O -0.43 -9.62 9.50 5.29 0.05 -9.57 16 20 C -0.07 -1.04 4.89 -104.66 -0.51 -1.56 16 21 C -0.10 -1.21 7.41 -39.12 -0.29 -1.50 16 22 C -0.10 -0.96 9.93 -39.98 -0.40 -1.36 16 23 C -0.11 -1.06 9.79 -39.47 -0.39 -1.44 16 24 C -0.02 -0.30 5.74 -106.84 -0.61 -0.91 16 25 C -0.16 -1.83 9.88 -39.37 -0.39 -2.22 16 26 C 0.08 1.00 11.07 -17.97 -0.20 0.80 16 27 N -0.49 -7.77 10.30 -13.21 -0.14 -7.91 16 28 C 0.17 2.76 10.50 -17.06 -0.18 2.58 16 29 C -0.08 -1.28 5.76 -106.59 -0.61 -1.90 16 30 H 0.25 8.13 8.31 -40.82 -0.34 7.79 16 31 H 0.36 8.99 5.02 -40.82 -0.21 8.78 16 32 H 0.04 0.89 6.40 -51.93 -0.33 0.56 16 33 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.84 4.77 -51.93 -0.25 0.59 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.40 7.41 -52.49 -0.39 1.01 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.17 3.03 6.53 -52.49 -0.34 2.69 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -37.17 367.55 -10.37 -47.54 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.60 Total: 6.57 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.61 Total: -3.29 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.04 Total: -66.11 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.05 Total: -9.57 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.71 Total: 19.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.17 -10.37 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273010583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.197 kcal (2) G-P(sol) polarization free energy of solvation -37.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds