Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99901 * 2 1 4 4 H 1.48499 * 109.47119 * 269.99705 * 3 2 1 5 5 H 1.48504 * 109.47243 * 29.99946 * 3 2 1 6 6 H 1.48504 * 109.47101 * 149.99834 * 3 2 1 7 7 C 1.38813 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00224 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99652 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99857 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47174 * 185.41477 * 10 9 7 12 12 H 1.09007 * 109.70092 * 47.97596 * 11 10 9 13 13 C 1.53192 * 109.58631 * 168.33139 * 11 10 9 14 14 C 1.53039 * 109.31366 * 174.42709 * 13 11 10 15 15 C 1.53047 * 109.53481 * 298.63162 * 14 13 11 16 16 C 1.52767 * 109.37876 * 61.24040 * 15 14 13 17 17 N 1.46921 * 109.01157 * 305.58646 * 16 15 14 18 18 C 1.34778 * 120.63189 * 233.58704 * 17 16 15 19 19 O 1.21589 * 119.99867 * 184.17062 * 18 17 16 20 20 C 1.47568 * 119.99881 * 4.17324 * 18 17 16 21 21 C 1.38709 * 120.43215 * 305.16941 * 20 18 17 22 22 C 1.39002 * 120.74862 * 180.02562 * 21 20 18 23 23 C 1.36341 * 121.19190 * 0.02562 * 22 21 20 24 24 C 1.40354 * 119.93170 * 359.97438 * 23 22 21 25 25 C 1.40686 * 122.10692 * 179.97438 * 24 23 22 26 26 C 1.36266 * 118.66812 * 180.02562 * 25 24 23 27 27 N 1.32514 * 121.83988 * 0.02562 * 26 25 24 28 28 C 1.31318 * 122.71853 * 359.95587 * 27 26 25 29 29 C 1.40138 * 119.91893 * 0.05034 * 28 27 26 30 30 H 0.96998 * 120.00022 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00121 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46908 * 65.41452 * 10 9 7 33 33 H 1.08998 * 109.47145 * 305.42034 * 10 9 7 34 34 H 1.09008 * 109.49453 * 294.37119 * 13 11 10 35 35 H 1.08995 * 109.49645 * 54.46770 * 13 11 10 36 36 H 1.09000 * 109.46042 * 58.64978 * 14 13 11 37 37 H 1.08998 * 109.46269 * 178.62985 * 14 13 11 38 38 H 1.08996 * 109.49704 * 181.31385 * 15 14 13 39 39 H 1.08993 * 109.49783 * 301.38309 * 15 14 13 40 40 H 1.09000 * 109.50376 * 185.70678 * 16 15 14 41 41 H 1.08999 * 109.43436 * 65.42913 * 16 15 14 42 42 H 1.07992 * 119.62294 * 359.74236 * 21 20 18 43 43 H 1.08000 * 119.40163 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.03387 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.66605 * 0.02562 * 25 24 23 46 46 H 1.07995 * 119.07827 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.03710 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0011 11 6 5.6109 -2.1944 0.1364 12 1 5.7824 -1.4881 0.9488 13 6 6.3502 -3.5037 0.4294 14 6 7.8586 -3.2450 0.4256 15 6 8.2888 -2.7461 -0.9558 16 6 7.5718 -1.4334 -1.2666 17 7 6.1236 -1.6329 -1.1208 18 6 5.2818 -1.3122 -2.1234 19 8 4.0805 -1.4105 -1.9634 20 6 5.8182 -0.8419 -3.4151 21 6 6.6824 0.2420 -3.4643 22 6 7.1911 0.6908 -4.6775 23 6 6.8576 0.0828 -5.8513 24 6 5.9861 -1.0173 -5.8473 25 6 5.6110 -1.6785 -7.0311 26 6 4.7599 -2.7393 -6.9458 27 7 4.2805 -3.1593 -5.7840 28 6 4.5885 -2.5899 -4.6415 29 6 5.4569 -1.4902 -4.6203 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 3.9232 -3.0003 -0.9327 33 1 3.7784 -3.0824 0.8394 34 1 6.0484 -3.8811 1.4065 35 1 6.1052 -4.2391 -0.3368 36 1 8.0996 -2.4912 1.1752 37 1 8.3863 -4.1700 0.6579 38 1 9.3666 -2.5843 -0.9648 39 1 8.0261 -3.4889 -1.7089 40 1 7.7976 -1.1285 -2.2884 41 1 7.9066 -0.6638 -0.5711 42 1 6.9595 0.7456 -2.5500 43 1 7.8628 1.5365 -4.6904 44 1 7.2642 0.4469 -6.7833 45 1 5.9900 -1.3520 -7.9882 46 1 4.4673 -3.2514 -7.8504 47 1 4.1727 -2.9685 -3.7194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273010583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 55.622982 kcal Electronic energy + Delta-G solvation = -30701.008783 eV Core-core repulsion = 26849.653005 eV Total energy + Delta-G solvation = -3851.355778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27644 -41.13253 -38.45899 -38.17121 -36.53949 -34.41797 -33.75823 -33.41846 -32.26939 -31.98064 -30.62242 -27.98837 -26.14569 -25.32817 -24.71141 -24.36283 -24.03711 -22.70721 -21.56569 -20.39542 -19.70248 -18.98640 -18.23167 -17.83010 -17.32953 -16.86589 -16.67815 -16.14995 -15.80171 -15.67751 -15.64511 -15.38611 -15.13593 -14.95502 -14.84730 -14.70606 -14.40400 -14.14639 -13.87894 -13.75617 -13.64784 -13.40275 -13.12920 -12.97999 -12.84577 -12.68521 -12.42204 -12.22910 -12.03685 -11.87794 -11.77142 -11.53777 -11.44214 -11.17161 -10.95151 -10.55359 -10.16588 -10.11012 -9.56989 -9.04731 -8.94186 -7.96425 -5.18545 -0.83164 -0.14589 0.66777 1.24956 1.34208 1.39307 1.74953 1.92965 2.13063 2.50348 2.99934 3.34146 3.36173 3.43583 3.61447 3.66231 3.73096 3.83212 3.85465 3.93970 3.98123 4.07516 4.19291 4.27235 4.30089 4.35340 4.38301 4.53551 4.61295 4.64584 4.71635 4.76982 4.82412 4.85692 4.94401 5.00842 5.01622 5.09043 5.11499 5.22536 5.23758 5.27514 5.33699 5.48818 5.60321 5.73031 5.77891 5.79038 6.26832 6.47800 6.93892 7.15558 7.34648 7.94842 8.13944 9.27475 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.005364 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.796813 B = 5218.596317 C = 6603.311931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.996 5.996 2 C -0.078 4.078 3 Si 0.958 3.042 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.193 4.193 8 H 0.045 0.955 9 N -0.718 5.718 10 C 0.167 3.833 11 C 0.144 3.856 12 H 0.077 0.923 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.129 4.129 16 C 0.094 3.906 17 N -0.603 5.603 18 C 0.512 3.488 19 O -0.502 6.502 20 C -0.111 4.111 21 C -0.082 4.082 22 C -0.098 4.098 23 C -0.085 4.085 24 C -0.044 4.044 25 C -0.137 4.137 26 C 0.052 3.948 27 N -0.514 5.514 28 C 0.127 3.873 29 C -0.096 4.096 30 H 0.252 0.748 31 H 0.358 0.642 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.148 0.852 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.185 0.815 46 H 0.181 0.819 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.699 -0.975 -11.181 31.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C -0.267 4.267 3 Si 0.787 3.213 4 H -0.222 1.222 5 H -0.220 1.220 6 H -0.179 1.179 7 C -0.325 4.325 8 H 0.063 0.937 9 N -0.361 5.361 10 C 0.041 3.959 11 C 0.041 3.959 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.167 4.167 16 C -0.027 4.027 17 N -0.339 5.339 18 C 0.298 3.702 19 O -0.375 6.375 20 C -0.117 4.117 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.103 4.103 24 C -0.050 4.050 25 C -0.156 4.156 26 C -0.092 4.092 27 N -0.223 5.223 28 C -0.043 4.043 29 C -0.099 4.099 30 H 0.061 0.939 31 H 0.191 0.809 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.166 0.834 43 H 0.193 0.807 44 H 0.194 0.806 45 H 0.202 0.798 46 H 0.198 0.802 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 28.305 -1.886 -11.223 30.507 hybrid contribution -0.438 1.333 0.186 1.415 sum 27.867 -0.554 -11.037 29.978 Atomic orbital electron populations 1.69898 1.06968 1.25937 1.62116 1.25350 0.96055 1.00804 1.04499 0.85328 0.78576 0.80301 0.77046 1.22223 1.21979 1.17922 1.18957 0.83148 0.92763 1.37624 0.93736 1.42442 1.01817 1.03280 1.88578 1.20845 0.89780 0.88247 0.97056 1.21465 0.92484 0.96354 0.85592 0.90474 1.21879 0.96740 0.94856 1.02539 1.21500 0.93421 1.02575 0.97432 1.21832 1.01330 0.96251 0.97300 1.22137 0.77575 0.99093 1.03886 1.48055 1.08020 1.63566 1.14269 1.18846 0.86906 0.79827 0.84574 1.91362 1.15489 1.50425 1.80241 1.20031 0.99986 0.99553 0.92081 1.21728 0.93694 0.93847 1.00837 1.21347 0.99369 1.00303 0.90612 1.21561 0.95035 0.92788 1.00895 1.18524 0.97444 0.97101 0.91916 1.22367 0.98213 0.95808 0.99210 1.22799 0.94987 0.95907 0.95470 1.67410 1.23920 1.31611 0.99366 1.22994 0.93100 0.92103 0.96130 1.18849 0.99457 0.97596 0.94013 0.93907 0.80917 0.96507 0.95845 0.89677 0.92579 0.90555 0.89929 0.87831 0.92948 0.88555 0.89466 0.83433 0.80688 0.80572 0.79774 0.80237 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -70.19 13.97 21.65 0.30 -69.88 16 2 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 3 Si 0.96 51.50 27.73 68.60 1.90 53.40 16 4 H -0.29 -16.02 7.11 99.48 0.71 -15.31 16 5 H -0.29 -15.48 7.11 99.48 0.71 -14.78 16 6 H -0.25 -12.24 6.52 99.48 0.65 -11.59 16 7 C -0.19 -12.41 10.20 84.03 0.86 -11.55 16 8 H 0.04 3.15 8.06 -2.91 -0.02 3.13 16 9 N -0.72 -37.95 2.98 -343.46 -1.02 -38.97 16 10 C 0.17 7.25 4.89 86.38 0.42 7.67 16 11 C 0.14 4.43 2.91 44.97 0.13 4.56 16 12 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 13 C -0.12 -2.75 5.34 30.67 0.16 -2.59 16 14 C -0.11 -1.69 5.89 30.62 0.18 -1.51 16 15 C -0.13 -1.85 6.07 30.53 0.19 -1.67 16 16 C 0.09 1.68 5.53 86.22 0.48 2.16 16 17 N -0.60 -17.31 2.98 -799.54 -2.38 -19.69 16 18 C 0.51 18.64 6.08 86.70 0.53 19.16 16 19 O -0.50 -24.42 9.50 -4.00 -0.04 -24.46 16 20 C -0.11 -3.35 4.89 -19.89 -0.10 -3.44 16 21 C -0.08 -1.71 7.41 22.57 0.17 -1.54 16 22 C -0.10 -1.35 9.93 22.01 0.22 -1.13 16 23 C -0.09 -1.24 9.79 22.34 0.22 -1.02 16 24 C -0.04 -1.01 5.74 -21.30 -0.12 -1.14 16 25 C -0.14 -2.61 9.88 22.41 0.22 -2.39 16 26 C 0.05 1.26 11.07 84.13 0.93 2.19 16 27 N -0.51 -17.60 10.30 -195.72 -2.02 -19.61 16 28 C 0.13 4.67 10.50 85.23 0.89 5.56 16 29 C -0.10 -3.01 5.76 -21.14 -0.12 -3.13 16 30 H 0.25 16.93 8.31 -92.71 -0.77 16.16 16 31 H 0.36 18.41 5.02 -92.71 -0.47 17.94 16 32 H 0.02 0.83 6.40 -2.39 -0.02 0.82 16 33 H 0.02 1.03 8.10 -2.39 -0.02 1.01 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.56 4.77 -2.39 -0.01 1.54 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.15 2.52 7.41 -2.91 -0.02 2.50 16 43 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 45 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 46 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 47 H 0.13 5.62 6.53 -2.91 -0.02 5.60 16 Total: -1.00 -92.43 367.55 2.93 -89.49 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.47 Total: 24.15 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.72 Total: 5.56 kcal Atomic # 7 Polarization: -143.04 SS G_CDS: -5.12 Total: -148.15 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 1.90 Total: 53.40 kcal Total: -92.43 2.93 -89.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273010583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.115 kcal (2) G-P(sol) polarization free energy of solvation -92.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds