Wall clock time and date at job start Sat Apr 11 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47213 * 116.10069 * 3 2 1 5 5 C 1.53000 * 109.46978 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46902 * 179.97438 * 5 4 3 7 7 C 1.39652 * 123.92039 * 269.70120 * 6 5 4 8 8 C 1.39292 * 130.79717 * 0.63642 * 7 6 5 9 9 C 1.37932 * 120.21370 * 179.62198 * 8 7 6 10 10 C 1.38299 * 120.31992 * 359.76759 * 9 8 7 11 11 C 1.38361 * 119.84671 * 359.97438 * 10 9 8 12 12 C 1.37708 * 120.03857 * 0.02562 * 11 10 9 13 13 C 1.50222 * 133.52970 * 179.97438 * 12 11 10 14 14 C 1.53345 * 111.56231 * 300.76969 * 13 12 11 15 15 C 1.54626 * 104.70406 * 121.35694 * 14 13 12 16 16 N 1.48645 * 104.63114 * 23.68713 * 15 14 13 17 17 C 1.46903 * 110.99787 * 201.45120 * 16 15 14 18 18 C 1.50698 * 109.46760 * 175.72512 * 17 16 15 19 19 H 1.07996 * 119.99965 * 5.23675 * 18 17 16 20 20 C 1.37880 * 119.99849 * 185.23166 * 18 17 16 21 21 N 1.31508 * 120.00098 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99862 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47309 * 89.99641 * 22 20 18 24 24 H 1.48502 * 109.46958 * 209.99827 * 22 20 18 25 25 H 1.48494 * 109.47140 * 329.99694 * 22 20 18 26 26 C 1.48785 * 104.36820 * 321.09780 * 16 15 14 27 27 C 1.34700 * 123.92017 * 89.99885 * 6 5 4 28 28 O 1.21283 * 126.66600 * 359.92476 * 27 6 5 29 29 H 1.08997 * 109.47220 * 236.10113 * 3 2 1 30 30 H 1.09007 * 109.47197 * 356.09682 * 3 2 1 31 31 H 1.09005 * 109.46842 * 299.99930 * 4 3 2 32 32 H 1.09002 * 109.46924 * 59.99916 * 4 3 2 33 33 H 1.09005 * 109.47247 * 299.99646 * 5 4 3 34 34 H 1.09002 * 109.47391 * 60.00166 * 5 4 3 35 35 H 1.08006 * 119.89273 * 359.37300 * 8 7 6 36 36 H 1.08003 * 119.83875 * 179.74752 * 9 8 7 37 37 H 1.07998 * 120.07613 * 180.02562 * 10 9 8 38 38 H 1.08002 * 119.97921 * 180.02562 * 11 10 9 39 39 H 1.08996 * 110.39349 * 240.16236 * 14 13 12 40 40 H 1.09001 * 110.39184 * 2.54874 * 14 13 12 41 41 H 1.08999 * 110.40669 * 142.47750 * 15 14 13 42 42 H 1.09007 * 110.40063 * 264.78647 * 15 14 13 43 43 H 1.08997 * 109.47220 * 295.73187 * 17 16 15 44 44 H 1.09005 * 109.46759 * 55.72655 * 17 16 15 45 45 H 0.97006 * 119.99969 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.45209 * 279.90011 * 26 16 15 47 47 H 1.08998 * 110.45429 * 157.35246 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6355 -1.2954 5 6 4.6477 0.6356 -1.2956 6 7 5.1358 1.2429 -2.5362 7 6 5.4011 0.5243 -3.7039 8 6 5.2743 -0.8340 -3.9853 9 6 5.5965 -1.3167 -5.2366 10 6 6.0431 -0.4565 -6.2230 11 6 6.1669 0.8950 -5.9538 12 6 5.8464 1.3815 -4.7060 13 6 5.8652 2.7534 -4.0942 14 6 7.2705 3.3661 -4.1275 15 6 7.1081 4.6772 -4.9310 16 7 5.6714 5.0304 -4.7868 17 6 5.2395 5.9292 -5.8655 18 6 3.7583 6.1806 -5.7469 19 1 3.2100 5.7886 -4.9031 20 6 3.1034 6.9112 -6.7155 21 7 1.8109 7.1311 -6.6118 22 14 4.0519 7.5888 -8.1753 23 1 4.0459 6.5915 -9.2755 24 1 3.4114 8.8447 -8.6419 25 1 5.4523 7.8688 -7.7687 26 6 4.9609 3.7254 -4.8635 27 6 5.3862 2.5585 -2.6814 28 8 5.2507 3.4189 -1.8374 29 1 2.9710 0.5740 0.8530 30 1 2.9718 -1.0245 0.0700 31 1 2.7546 0.0621 -2.1484 32 1 2.7539 1.6607 -1.3653 33 1 5.0112 1.2087 -0.4426 34 1 5.0112 -0.3897 -1.2260 35 1 4.9265 -1.5121 -3.2199 36 1 5.4998 -2.3717 -5.4469 37 1 6.2939 -0.8386 -7.2015 38 1 6.5151 1.5688 -6.7227 39 1 7.6154 3.5808 -3.1161 40 1 7.9656 2.6950 -4.6322 41 1 7.7364 5.4617 -4.5094 42 1 7.3577 4.5137 -5.9795 43 1 5.7760 6.8748 -5.7872 44 1 5.4538 5.4686 -6.8299 45 1 1.3501 7.6448 -7.2935 46 1 4.8571 3.4086 -5.9013 47 1 3.9835 3.7952 -4.3861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:58 Heat of formation + Delta-G solvation = 42.874328 kcal Electronic energy + Delta-G solvation = -29480.880181 eV Core-core repulsion = 25628.971580 eV Total energy + Delta-G solvation = -3851.908601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99204 -38.45898 -38.06598 -37.19717 -36.03396 -34.52782 -33.19823 -32.06775 -30.40874 -29.94956 -28.33380 -27.66764 -26.84918 -23.98047 -22.89037 -22.22992 -21.94700 -20.90720 -20.28016 -19.45687 -18.06097 -17.25131 -16.83525 -16.47393 -16.08487 -15.81581 -15.69317 -15.09083 -14.81590 -14.44258 -14.27174 -14.15989 -14.03918 -13.77006 -13.48528 -13.30391 -13.11338 -12.82505 -12.70755 -12.41719 -12.39213 -12.26723 -12.05599 -11.97916 -11.78710 -11.59926 -11.34753 -11.20013 -11.14593 -11.13380 -10.70849 -10.57862 -10.46771 -10.33067 -9.80299 -9.68030 -9.25069 -8.95065 -8.59237 -7.99053 -7.57733 -6.05782 -4.04282 1.10766 1.22109 2.38059 2.56526 2.56919 2.69692 3.26479 3.34996 3.36985 3.62921 3.72913 4.12495 4.23054 4.40801 4.48954 4.58008 4.70639 4.78159 4.81740 4.92435 4.94768 4.98618 5.03106 5.06156 5.10315 5.21686 5.26718 5.30451 5.46600 5.50076 5.61032 5.69683 5.73945 5.82941 5.93558 5.97518 6.11635 6.14721 6.26730 6.30321 6.40261 6.47115 6.55734 6.64265 6.73092 6.89627 7.02808 7.33520 7.46474 7.81668 7.84953 8.01216 8.61852 9.03067 9.55220 11.07311 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.003720 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.415636 B = 7525.273583 C = 8914.698378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.204 3.796 3 C -0.020 4.020 4 C -0.140 4.140 5 C 0.113 3.887 6 N -0.558 5.558 7 C 0.150 3.850 8 C -0.143 4.143 9 C -0.088 4.088 10 C -0.143 4.143 11 C -0.060 4.060 12 C -0.120 4.120 13 C -0.064 4.064 14 C -0.093 4.093 15 C 0.028 3.972 16 N -0.493 5.493 17 C 0.153 3.847 18 C -0.515 4.515 19 H 0.080 0.920 20 C 0.070 3.930 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.085 3.915 27 C 0.545 3.455 28 O -0.471 6.471 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.033 0.967 44 H -0.012 1.012 45 H 0.264 0.736 46 H 0.055 0.945 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.809 -21.109 6.825 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.114 4.114 3 C -0.061 4.061 4 C -0.180 4.180 5 C -0.009 4.009 6 N -0.281 5.281 7 C 0.054 3.946 8 C -0.164 4.164 9 C -0.107 4.107 10 C -0.162 4.162 11 C -0.079 4.079 12 C -0.123 4.123 13 C -0.068 4.068 14 C -0.131 4.131 15 C -0.100 4.100 16 N -0.217 5.217 17 C 0.026 3.974 18 C -0.553 4.553 19 H 0.098 0.902 20 C -0.132 4.132 21 N -0.537 5.537 22 Si 0.702 3.298 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.043 4.043 27 C 0.334 3.666 28 O -0.341 6.341 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.005 0.995 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.712 -20.158 7.882 24.150 hybrid contribution 0.767 -0.021 -1.642 1.812 sum 11.479 -20.179 6.241 24.039 Atomic orbital electron populations 1.81263 1.13111 1.08513 1.08155 1.29114 0.95273 0.93430 0.93545 1.19170 0.81880 1.04414 1.00587 1.21986 0.95773 1.03381 0.96821 1.21560 0.93345 0.99634 0.86315 1.46046 1.62776 1.08258 1.11064 1.18269 0.97559 0.92778 0.85959 1.20260 1.06136 0.91803 0.98222 1.20826 0.97860 0.99717 0.92265 1.21011 1.02610 0.92887 0.99666 1.20282 0.97565 0.95436 0.94589 1.19673 1.04408 0.93881 0.94363 1.20395 0.99593 0.93749 0.93104 1.22132 0.92581 0.96540 1.01831 1.23194 0.93194 0.95851 0.97773 1.65478 1.00362 1.09680 1.46177 1.20349 0.97843 0.92147 0.87022 1.21022 0.90731 1.34126 1.09397 0.90208 1.24907 0.94713 0.95702 0.97850 1.69897 1.08261 1.40415 1.35105 0.86860 0.80715 0.78909 0.83276 1.20341 1.21115 1.19119 1.22591 0.96853 0.87139 0.97725 1.20253 0.76096 0.80683 0.89596 1.90794 1.50341 1.45204 1.47802 0.86935 0.87144 0.90289 0.89862 0.88710 0.89342 0.85928 0.85506 0.85529 0.85537 0.90548 0.90609 0.90258 0.94251 0.94935 0.99472 0.92629 0.92664 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.86 18.54 42.15 0.78 -5.08 16 2 C 0.20 1.97 15.43 -20.76 -0.32 1.65 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.14 -1.08 5.49 -26.73 -0.15 -1.22 16 5 C 0.11 0.87 5.75 -4.04 -0.02 0.85 16 6 N -0.56 -6.63 2.75 -113.44 -0.31 -6.94 16 7 C 0.15 1.71 6.70 -83.55 -0.56 1.15 16 8 C -0.14 -1.25 9.73 -39.30 -0.38 -1.64 16 9 C -0.09 -0.72 10.02 -39.67 -0.40 -1.11 16 10 C -0.14 -1.29 10.06 -39.51 -0.40 -1.69 16 11 C -0.06 -0.67 9.91 -39.73 -0.39 -1.07 16 12 C -0.12 -1.55 4.79 -104.70 -0.50 -2.05 16 13 C -0.06 -0.99 0.93 -156.76 -0.15 -1.14 16 14 C -0.09 -1.31 6.33 -25.70 -0.16 -1.47 16 15 C 0.03 0.47 6.52 -2.00 -0.01 0.46 16 16 N -0.49 -10.52 5.44 -231.58 -1.26 -11.77 16 17 C 0.15 3.72 3.74 -4.98 -0.02 3.70 16 18 C -0.51 -14.78 9.13 -34.44 -0.31 -15.09 16 19 H 0.08 2.53 7.41 -52.49 -0.39 2.14 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 22 Si 0.88 21.44 27.37 -169.99 -4.65 16.79 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.26 6.70 56.52 0.38 -5.88 16 26 C 0.09 1.67 4.84 -2.55 -0.01 1.66 16 27 C 0.55 8.62 6.57 -11.14 -0.07 8.55 16 28 O -0.47 -8.97 17.70 5.55 0.10 -8.87 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.71 7.97 -51.93 -0.41 0.29 16 34 H 0.09 0.39 7.61 -51.93 -0.40 0.00 16 35 H 0.12 0.75 7.70 -52.48 -0.40 0.35 16 36 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 40 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 43 H 0.03 0.80 7.56 -51.93 -0.39 0.41 16 44 H -0.01 -0.29 7.12 -51.93 -0.37 -0.66 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.06 1.08 7.64 -51.93 -0.40 0.69 16 47 H 0.08 1.90 7.28 -51.93 -0.38 1.52 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -36.50 390.64 -9.71 -46.21 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.89 Total: -2.42 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -4.13 Total: -6.79 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.02 Total: -50.80 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.10 Total: -8.87 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.50 -9.71 -46.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.083 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds