Wall clock time and date at job start Sat Apr 11 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47213 * 116.10069 * 3 2 1 5 5 C 1.53000 * 109.46978 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46902 * 179.97438 * 5 4 3 7 7 C 1.39652 * 123.92039 * 269.70120 * 6 5 4 8 8 C 1.39292 * 130.79717 * 0.63642 * 7 6 5 9 9 C 1.37932 * 120.21370 * 179.62198 * 8 7 6 10 10 C 1.38299 * 120.31992 * 359.76759 * 9 8 7 11 11 C 1.38361 * 119.84671 * 359.97438 * 10 9 8 12 12 C 1.37708 * 120.03857 * 0.02562 * 11 10 9 13 13 C 1.50222 * 133.52970 * 179.97438 * 12 11 10 14 14 C 1.53345 * 111.56231 * 300.76969 * 13 12 11 15 15 C 1.54626 * 104.70406 * 121.35694 * 14 13 12 16 16 N 1.48645 * 104.63114 * 23.68713 * 15 14 13 17 17 C 1.46903 * 110.99787 * 201.45120 * 16 15 14 18 18 C 1.50698 * 109.46760 * 175.72512 * 17 16 15 19 19 H 1.07996 * 119.99965 * 5.23675 * 18 17 16 20 20 C 1.37880 * 119.99849 * 185.23166 * 18 17 16 21 21 N 1.31508 * 120.00098 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99862 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47309 * 89.99641 * 22 20 18 24 24 H 1.48502 * 109.46958 * 209.99827 * 22 20 18 25 25 H 1.48494 * 109.47140 * 329.99694 * 22 20 18 26 26 C 1.48785 * 104.36820 * 321.09780 * 16 15 14 27 27 C 1.34700 * 123.92017 * 89.99885 * 6 5 4 28 28 O 1.21283 * 126.66600 * 359.92476 * 27 6 5 29 29 H 1.08997 * 109.47220 * 236.10113 * 3 2 1 30 30 H 1.09007 * 109.47197 * 356.09682 * 3 2 1 31 31 H 1.09005 * 109.46842 * 299.99930 * 4 3 2 32 32 H 1.09002 * 109.46924 * 59.99916 * 4 3 2 33 33 H 1.09005 * 109.47247 * 299.99646 * 5 4 3 34 34 H 1.09002 * 109.47391 * 60.00166 * 5 4 3 35 35 H 1.08006 * 119.89273 * 359.37300 * 8 7 6 36 36 H 1.08003 * 119.83875 * 179.74752 * 9 8 7 37 37 H 1.07998 * 120.07613 * 180.02562 * 10 9 8 38 38 H 1.08002 * 119.97921 * 180.02562 * 11 10 9 39 39 H 1.08996 * 110.39349 * 240.16236 * 14 13 12 40 40 H 1.09001 * 110.39184 * 2.54874 * 14 13 12 41 41 H 1.08999 * 110.40669 * 142.47750 * 15 14 13 42 42 H 1.09007 * 110.40063 * 264.78647 * 15 14 13 43 43 H 1.08997 * 109.47220 * 295.73187 * 17 16 15 44 44 H 1.09005 * 109.46759 * 55.72655 * 17 16 15 45 45 H 0.97006 * 119.99969 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.45209 * 279.90011 * 26 16 15 47 47 H 1.08998 * 110.45429 * 157.35246 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6355 -1.2954 5 6 4.6477 0.6356 -1.2956 6 7 5.1358 1.2429 -2.5362 7 6 5.4011 0.5243 -3.7039 8 6 5.2743 -0.8340 -3.9853 9 6 5.5965 -1.3167 -5.2366 10 6 6.0431 -0.4565 -6.2230 11 6 6.1669 0.8950 -5.9538 12 6 5.8464 1.3815 -4.7060 13 6 5.8652 2.7534 -4.0942 14 6 7.2705 3.3661 -4.1275 15 6 7.1081 4.6772 -4.9310 16 7 5.6714 5.0304 -4.7868 17 6 5.2395 5.9292 -5.8655 18 6 3.7583 6.1806 -5.7469 19 1 3.2100 5.7886 -4.9031 20 6 3.1034 6.9112 -6.7155 21 7 1.8109 7.1311 -6.6118 22 14 4.0519 7.5888 -8.1753 23 1 4.0459 6.5915 -9.2755 24 1 3.4114 8.8447 -8.6419 25 1 5.4523 7.8688 -7.7687 26 6 4.9609 3.7254 -4.8635 27 6 5.3862 2.5585 -2.6814 28 8 5.2507 3.4189 -1.8374 29 1 2.9710 0.5740 0.8530 30 1 2.9718 -1.0245 0.0700 31 1 2.7546 0.0621 -2.1484 32 1 2.7539 1.6607 -1.3653 33 1 5.0112 1.2087 -0.4426 34 1 5.0112 -0.3897 -1.2260 35 1 4.9265 -1.5121 -3.2199 36 1 5.4998 -2.3717 -5.4469 37 1 6.2939 -0.8386 -7.2015 38 1 6.5151 1.5688 -6.7227 39 1 7.6154 3.5808 -3.1161 40 1 7.9656 2.6950 -4.6322 41 1 7.7364 5.4617 -4.5094 42 1 7.3577 4.5137 -5.9795 43 1 5.7760 6.8748 -5.7872 44 1 5.4538 5.4686 -6.8299 45 1 1.3501 7.6448 -7.2935 46 1 4.8571 3.4086 -5.9013 47 1 3.9835 3.7952 -4.3861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:57 Heat of formation + Delta-G solvation = 17.707537 kcal Electronic energy + Delta-G solvation = -29481.971495 eV Core-core repulsion = 25628.971580 eV Total energy + Delta-G solvation = -3852.999915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.01540 -39.48295 -39.32574 -38.07935 -37.00402 -35.64152 -34.82094 -33.53536 -31.59251 -30.83589 -29.50856 -28.85939 -28.28119 -25.22974 -23.82636 -23.50901 -22.85435 -22.06529 -21.73523 -20.56675 -18.97365 -18.74178 -18.09452 -17.59255 -17.12358 -16.84245 -16.53205 -16.42867 -16.16621 -15.83411 -15.25119 -15.06096 -15.01935 -14.89625 -14.64500 -14.57540 -14.26974 -14.09261 -13.90083 -13.84607 -13.56946 -13.31803 -13.24882 -12.90856 -12.72085 -12.68914 -12.61097 -12.49477 -12.40667 -12.17902 -12.15019 -11.82341 -11.72387 -11.56595 -11.42972 -11.29707 -10.86861 -10.83044 -9.74051 -9.24377 -8.83806 -8.32726 -6.38576 0.25158 0.47404 1.31443 1.35088 1.39203 1.46691 1.64582 1.81839 1.86690 2.31543 2.89071 3.00781 3.07046 3.07697 3.09645 3.48130 3.71746 3.74479 3.86955 3.94308 4.07444 4.17470 4.23982 4.26591 4.37408 4.42329 4.46816 4.54032 4.57586 4.64600 4.67105 4.73757 4.75823 4.78606 4.81793 4.92915 5.01226 5.02549 5.05069 5.10270 5.16510 5.23887 5.45748 5.55947 5.67520 5.73254 5.80697 5.89678 6.04937 6.20486 6.54112 6.60805 6.67522 6.91009 7.25954 8.84570 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.003720 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.415636 B = 7525.273583 C = 8914.698378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.232 3.768 3 C -0.010 4.010 4 C -0.134 4.134 5 C 0.107 3.893 6 N -0.551 5.551 7 C 0.132 3.868 8 C -0.131 4.131 9 C -0.081 4.081 10 C -0.139 4.139 11 C -0.074 4.074 12 C -0.145 4.145 13 C -0.063 4.063 14 C -0.082 4.082 15 C 0.027 3.973 16 N -0.523 5.523 17 C 0.165 3.835 18 C -0.526 4.526 19 H 0.024 0.976 20 C 0.008 3.992 21 N -0.950 5.950 22 Si 0.954 3.046 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.246 1.246 26 C 0.095 3.905 27 C 0.535 3.465 28 O -0.522 6.522 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.033 0.967 44 H -0.001 1.001 45 H 0.268 0.732 46 H 0.049 0.951 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.249 -24.842 5.703 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.085 4.085 3 C -0.050 4.050 4 C -0.175 4.175 5 C -0.013 4.013 6 N -0.273 5.273 7 C 0.037 3.963 8 C -0.152 4.152 9 C -0.099 4.099 10 C -0.157 4.157 11 C -0.093 4.093 12 C -0.148 4.148 13 C -0.067 4.067 14 C -0.120 4.120 15 C -0.100 4.100 16 N -0.247 5.247 17 C 0.038 3.962 18 C -0.564 4.564 19 H 0.043 0.957 20 C -0.190 4.190 21 N -0.590 5.590 22 Si 0.776 3.224 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.169 1.169 26 C -0.034 4.034 27 C 0.324 3.676 28 O -0.397 6.397 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.169 0.831 38 H 0.143 0.857 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.173 -23.958 6.763 28.647 hybrid contribution -0.350 1.028 -1.267 1.669 sum 13.823 -22.930 5.496 27.333 Atomic orbital electron populations 1.81283 1.15713 1.11384 1.10679 1.30029 0.96159 0.91023 0.91264 1.19491 0.78449 1.07499 0.99577 1.21876 0.96128 1.00942 0.98507 1.21935 0.92840 1.01973 0.84540 1.45992 1.61610 1.06988 1.12684 1.18534 0.98672 0.93893 0.85239 1.20703 1.04346 0.90665 0.99448 1.21319 0.95842 1.01372 0.91408 1.21374 1.01340 0.91890 1.01120 1.20443 0.98219 0.96758 0.93860 1.19602 1.06991 0.92361 0.95891 1.20255 0.98957 0.94533 0.92928 1.22106 0.92526 0.95721 1.01637 1.23305 0.89913 0.97468 0.99361 1.65312 1.03554 1.10540 1.45333 1.20082 0.94545 0.93060 0.88539 1.21226 0.93252 1.34035 1.07868 0.95737 1.25951 0.95694 0.95801 1.01506 1.70076 1.10541 1.41649 1.36730 0.85614 0.79805 0.78285 0.78655 1.18643 1.20646 1.16902 1.22303 0.95699 0.87923 0.97475 1.20350 0.76014 0.81914 0.89368 1.90748 1.52839 1.46938 1.49143 0.84529 0.82020 0.90496 0.94437 0.88572 0.84374 0.82368 0.81864 0.83107 0.85657 0.90830 0.87374 0.89389 0.92594 0.94917 0.98303 0.92327 0.93329 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -14.37 18.54 20.00 0.37 -14.00 16 2 C 0.23 4.34 15.43 89.44 1.38 5.72 16 3 C -0.01 -0.07 5.70 28.79 0.16 0.09 16 4 C -0.13 -1.94 5.49 30.59 0.17 -1.78 16 5 C 0.11 1.40 5.75 86.38 0.50 1.90 16 6 N -0.55 -12.70 2.75 -631.24 -1.73 -14.44 16 7 C 0.13 2.73 6.70 38.38 0.26 2.99 16 8 C -0.13 -1.69 9.73 22.45 0.22 -1.47 16 9 C -0.08 -0.90 10.02 22.21 0.22 -0.68 16 10 C -0.14 -1.97 10.06 22.31 0.22 -1.75 16 11 C -0.07 -1.52 9.91 22.17 0.22 -1.30 16 12 C -0.15 -3.62 4.79 -19.91 -0.10 -3.72 16 13 C -0.06 -2.00 0.93 -53.64 -0.05 -2.05 16 14 C -0.08 -2.27 6.33 31.26 0.20 -2.07 16 15 C 0.03 0.89 6.52 86.52 0.56 1.46 16 16 N -0.52 -23.43 5.44 -886.57 -4.82 -28.25 16 17 C 0.17 8.25 3.74 85.56 0.32 8.57 16 18 C -0.53 -32.13 9.13 25.60 0.23 -31.90 16 19 H 0.02 1.71 7.41 -2.91 -0.02 1.69 16 20 C 0.01 0.47 5.47 84.66 0.46 0.93 16 21 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 22 Si 0.95 44.70 27.37 68.60 1.88 46.57 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.25 -10.61 6.70 99.48 0.67 -9.95 16 26 C 0.09 3.99 4.84 86.09 0.42 4.41 16 27 C 0.53 17.77 6.57 87.59 0.58 18.35 16 28 O -0.52 -21.48 17.70 -3.04 -0.05 -21.53 16 29 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.16 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.28 7.97 -2.38 -0.02 1.26 16 34 H 0.14 0.47 7.61 -2.39 -0.02 0.45 16 35 H 0.16 0.89 7.70 -2.91 -0.02 0.87 16 36 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.07 2.08 7.74 -2.39 -0.02 2.06 16 40 H 0.11 2.28 7.74 -2.39 -0.02 2.26 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.06 1.65 7.91 -2.38 -0.02 1.63 16 43 H 0.03 1.62 7.56 -2.39 -0.02 1.61 16 44 H 0.00 -0.03 7.12 -2.38 -0.02 -0.05 16 45 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 46 H 0.05 2.04 7.64 -2.39 -0.02 2.02 16 47 H 0.03 1.78 7.28 -2.39 -0.02 1.76 16 Total: -1.00 -91.05 390.64 2.85 -88.20 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.93 Total: 7.09 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.98 Total: -2.30 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -5.88 Total: -118.03 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.57 kcal Total: -91.05 2.85 -88.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.904 kcal (2) G-P(sol) polarization free energy of solvation -91.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds