Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00435 * 2 1 4 4 H 1.48499 * 109.47586 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47049 * 300.00019 * 3 2 1 6 6 H 1.48497 * 109.47114 * 59.99691 * 3 2 1 7 7 C 1.38815 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99965 * 179.73082 * 9 7 2 11 11 C 1.52994 * 109.47224 * 174.82958 * 10 9 7 12 12 H 1.09001 * 109.58899 * 308.40754 * 11 10 9 13 13 C 1.53198 * 109.58426 * 188.12232 * 11 10 9 14 14 C 1.53083 * 109.29193 * 185.71767 * 13 11 10 15 15 C 1.53040 * 109.65577 * 61.15652 * 14 13 11 16 16 C 1.53190 * 109.31504 * 298.69991 * 15 14 13 17 17 N 1.46920 * 108.77866 * 54.63455 * 16 15 14 18 18 C 1.34770 * 120.63238 * 126.37240 * 17 16 15 19 19 O 1.21585 * 120.00259 * 185.96362 * 18 17 16 20 20 C 1.47563 * 120.00060 * 5.96067 * 18 17 16 21 21 C 1.38708 * 120.43240 * 49.70786 * 20 18 17 22 22 C 1.39002 * 120.75141 * 180.02562 * 21 20 18 23 23 C 1.36346 * 121.19210 * 359.97438 * 22 21 20 24 24 C 1.40344 * 119.92690 * 359.97438 * 23 22 21 25 25 C 1.40684 * 122.10054 * 179.97438 * 24 23 22 26 26 C 1.36267 * 118.66658 * 179.97438 * 25 24 23 27 27 N 1.32509 * 121.84095 * 359.97438 * 26 25 24 28 28 C 1.31311 * 122.71881 * 0.02562 * 27 26 25 29 29 C 1.40129 * 119.92355 * 359.74343 * 28 27 26 30 30 H 0.96998 * 119.99287 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00595 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46745 * 294.83179 * 10 9 7 33 33 H 1.09001 * 109.47077 * 54.82764 * 10 9 7 34 34 H 1.08997 * 109.50105 * 305.52916 * 13 11 10 35 35 H 1.08994 * 109.49473 * 65.63341 * 13 11 10 36 36 H 1.08993 * 109.34913 * 301.13419 * 14 13 11 37 37 H 1.09000 * 109.43402 * 181.23922 * 14 13 11 38 38 H 1.08994 * 109.49782 * 178.74192 * 15 14 13 39 39 H 1.09006 * 109.49545 * 58.65137 * 15 14 13 40 40 H 1.09005 * 109.58196 * 294.84958 * 16 15 14 41 41 H 1.09003 * 109.70366 * 174.49336 * 16 15 14 42 42 H 1.07999 * 119.62146 * 0.02562 * 21 20 18 43 43 H 1.08004 * 119.40112 * 179.97438 * 22 21 20 44 44 H 1.07994 * 120.03527 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.66890 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.07647 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.03975 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0071 11 6 1.0693 -4.8171 0.1243 12 1 0.4155 -4.6451 0.9794 13 6 1.8385 -6.1273 0.3214 14 6 0.8532 -7.2989 0.3091 15 6 0.1363 -7.3544 -1.0418 16 6 -0.6521 -6.0577 -1.2508 17 7 0.2630 -4.9183 -1.0998 18 6 0.3614 -3.9838 -2.0660 19 8 1.1983 -3.1061 -1.9799 20 6 -0.5467 -4.0259 -3.2284 21 6 -1.9159 -4.1527 -3.0461 22 6 -2.7772 -4.1937 -4.1363 23 6 -2.3052 -4.1103 -5.4127 24 6 -0.9268 -3.9800 -5.6424 25 6 -0.3903 -3.8908 -6.9398 26 6 0.9592 -3.7654 -7.0819 27 7 1.7715 -3.7253 -6.0358 28 6 1.3395 -3.8033 -4.7983 29 6 -0.0327 -3.9294 -4.5436 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6092 -3.7533 -0.9425 33 1 2.7560 -3.6777 0.8298 34 1 2.5586 -6.2515 -0.4873 35 1 2.3636 -6.1007 1.2761 36 1 0.1200 -7.1625 1.1039 37 1 1.3955 -8.2304 0.4711 38 1 -0.5481 -8.2026 -1.0559 39 1 0.8710 -7.4660 -1.8393 40 1 -1.4465 -5.9893 -0.5075 41 1 -1.0856 -6.0482 -2.2509 42 1 -2.3172 -4.2204 -2.0457 43 1 -3.8396 -4.2933 -3.9692 44 1 -2.9913 -4.1444 -6.2461 45 1 -1.0349 -3.9210 -7.8058 46 1 1.3782 -3.6959 -8.0749 47 1 2.0405 -3.7657 -3.9775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275042776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = 75.913754 kcal Electronic energy + Delta-G solvation = -30621.592668 eV Core-core repulsion = 26771.116764 eV Total energy + Delta-G solvation = -3850.475904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03045 -39.82227 -37.28235 -36.84717 -34.57249 -33.02423 -32.40241 -31.86031 -31.13509 -29.82243 -29.50782 -26.26073 -24.66743 -24.15594 -23.55363 -23.17156 -22.63809 -21.22627 -20.50247 -19.07619 -17.97689 -17.28227 -16.78856 -16.58361 -16.04156 -15.53181 -14.95679 -14.67793 -14.53350 -14.47288 -14.40505 -14.00665 -13.86277 -13.69356 -13.41337 -13.27780 -13.02058 -12.76977 -12.55028 -12.22352 -12.10955 -11.98658 -11.88478 -11.63770 -11.34817 -11.03897 -10.92361 -10.74545 -10.71990 -10.58299 -10.31413 -10.04390 -9.84770 -9.53553 -9.37708 -9.06679 -8.76577 -8.43333 -8.10549 -7.94113 -6.53766 -5.58718 -2.75859 0.28117 0.95613 1.81531 2.97268 3.28793 3.43526 3.55636 3.60110 3.61897 4.16045 4.50265 4.55892 4.71704 4.73636 4.78631 4.83549 4.89742 4.92612 4.98099 5.07416 5.12838 5.17954 5.32525 5.40529 5.49042 5.59110 5.66438 5.70808 5.77993 5.79262 5.81984 5.84585 5.94498 5.98042 6.03962 6.07219 6.09019 6.14261 6.31936 6.34996 6.37274 6.51939 6.63844 6.69726 6.81472 6.92167 7.25762 7.86454 7.88362 8.09736 8.59486 8.82845 9.71048 10.29866 10.63841 11.64984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008204 B = 0.005339 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.250436 B = 5243.403333 C = 7165.859303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.021 4.021 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.205 4.205 8 H 0.067 0.933 9 N -0.693 5.693 10 C 0.158 3.842 11 C 0.143 3.857 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.133 4.133 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.509 3.491 19 O -0.429 6.429 20 C -0.065 4.065 21 C -0.096 4.096 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.024 4.024 25 C -0.166 4.166 26 C 0.076 3.924 27 N -0.493 5.493 28 C 0.165 3.835 29 C -0.083 4.083 30 H 0.250 0.750 31 H 0.379 0.621 32 H 0.042 0.958 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.150 0.850 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -18.238 -8.322 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.030 3.970 11 C 0.040 3.960 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.017 4.017 17 N -0.346 5.346 18 C 0.294 3.706 19 O -0.297 6.297 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.129 4.129 24 C -0.029 4.029 25 C -0.186 4.186 26 C -0.067 4.067 27 N -0.201 5.201 28 C -0.006 4.006 29 C -0.086 4.086 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.167 0.833 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.528 -17.483 -8.572 19.991 hybrid contribution -1.120 0.972 0.057 1.484 sum -5.647 -16.511 -8.515 19.417 Atomic orbital electron populations 1.69662 1.05022 1.24918 1.58920 1.24623 0.95439 0.97312 1.04223 0.86164 0.78819 0.84697 0.76924 1.20713 1.22233 1.22265 1.19223 0.90847 0.84197 1.39471 0.91483 1.42325 1.05402 0.99821 1.85973 1.20950 0.92972 0.84759 0.98302 1.21516 0.92931 0.95613 0.85919 0.91225 1.21918 0.98102 0.94135 1.02470 1.21501 0.98570 0.98288 0.97136 1.21908 0.99820 0.97217 0.98237 1.21764 0.92136 0.85533 1.02306 1.47708 1.43387 1.24518 1.19015 1.18072 0.86519 0.82952 0.83019 1.91234 1.32376 1.32639 1.73446 1.20170 0.94435 0.99496 0.92965 1.21404 0.92117 0.98249 0.99691 1.20882 1.00019 0.98407 0.92275 1.20983 0.93617 1.00746 0.97574 1.18092 0.93797 0.98152 0.92888 1.21829 0.96898 1.03494 0.96360 1.22212 0.90294 0.96437 0.97775 1.67529 1.40277 1.12879 0.99416 1.23473 0.92858 0.89952 0.94297 1.18776 0.95222 1.02089 0.92488 0.94045 0.78707 0.94021 0.96463 0.91501 0.90801 0.91884 0.92039 0.91227 0.91660 0.91850 0.89856 0.84964 0.85256 0.85209 0.84690 0.83270 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.06 55.49 0.72 -28.78 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 0.90 23.85 29.55 -169.99 -5.02 18.83 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 7 C -0.21 -6.03 9.70 -15.06 -0.15 -6.18 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.69 -18.14 3.22 -59.90 -0.19 -18.33 16 10 C 0.16 3.30 4.87 -4.04 -0.02 3.28 16 11 C 0.14 2.32 2.93 -67.60 -0.20 2.12 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 13 C -0.13 -1.58 5.38 -26.59 -0.14 -1.72 16 14 C -0.12 -1.16 5.88 -26.67 -0.16 -1.32 16 15 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 16 C 0.11 1.21 5.33 -3.71 -0.02 1.19 16 17 N -0.61 -9.43 2.97 -166.43 -0.49 -9.92 16 18 C 0.51 9.51 5.99 -12.46 -0.07 9.43 16 19 O -0.43 -10.01 9.21 5.29 0.05 -9.96 16 20 C -0.07 -1.07 4.80 -104.66 -0.50 -1.58 16 21 C -0.10 -1.31 7.58 -39.12 -0.30 -1.60 16 22 C -0.10 -1.09 9.93 -39.98 -0.40 -1.48 16 23 C -0.11 -1.26 9.79 -39.47 -0.39 -1.65 16 24 C -0.02 -0.34 5.74 -106.84 -0.61 -0.95 16 25 C -0.17 -2.02 9.88 -39.37 -0.39 -2.41 16 26 C 0.08 1.02 11.07 -17.97 -0.20 0.82 16 27 N -0.49 -8.21 10.30 -13.22 -0.14 -8.35 16 28 C 0.16 2.89 10.46 -17.07 -0.18 2.71 16 29 C -0.08 -1.37 5.76 -106.59 -0.61 -1.98 16 30 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.38 10.56 6.98 -40.82 -0.29 10.27 16 32 H 0.04 0.94 6.36 -51.93 -0.33 0.61 16 33 H 0.02 0.37 8.13 -51.93 -0.42 -0.06 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.91 5.21 -51.93 -0.27 0.64 16 42 H 0.13 1.68 7.43 -52.49 -0.39 1.29 16 43 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 47 H 0.17 3.17 6.33 -52.48 -0.33 2.84 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -35.33 370.26 -10.74 -46.06 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.65 Total: 8.37 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.59 Total: -3.50 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.10 Total: -65.38 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.05 Total: -9.96 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.02 Total: 18.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.33 -10.74 -46.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275042776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.977 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds