Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00435 * 2 1 4 4 H 1.48499 * 109.47586 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47049 * 300.00019 * 3 2 1 6 6 H 1.48497 * 109.47114 * 59.99691 * 3 2 1 7 7 C 1.38815 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99965 * 179.73082 * 9 7 2 11 11 C 1.52994 * 109.47224 * 174.82958 * 10 9 7 12 12 H 1.09001 * 109.58899 * 308.40754 * 11 10 9 13 13 C 1.53198 * 109.58426 * 188.12232 * 11 10 9 14 14 C 1.53083 * 109.29193 * 185.71767 * 13 11 10 15 15 C 1.53040 * 109.65577 * 61.15652 * 14 13 11 16 16 C 1.53190 * 109.31504 * 298.69991 * 15 14 13 17 17 N 1.46920 * 108.77866 * 54.63455 * 16 15 14 18 18 C 1.34770 * 120.63238 * 126.37240 * 17 16 15 19 19 O 1.21585 * 120.00259 * 185.96362 * 18 17 16 20 20 C 1.47563 * 120.00060 * 5.96067 * 18 17 16 21 21 C 1.38708 * 120.43240 * 49.70786 * 20 18 17 22 22 C 1.39002 * 120.75141 * 180.02562 * 21 20 18 23 23 C 1.36346 * 121.19210 * 359.97438 * 22 21 20 24 24 C 1.40344 * 119.92690 * 359.97438 * 23 22 21 25 25 C 1.40684 * 122.10054 * 179.97438 * 24 23 22 26 26 C 1.36267 * 118.66658 * 179.97438 * 25 24 23 27 27 N 1.32509 * 121.84095 * 359.97438 * 26 25 24 28 28 C 1.31311 * 122.71881 * 0.02562 * 27 26 25 29 29 C 1.40129 * 119.92355 * 359.74343 * 28 27 26 30 30 H 0.96998 * 119.99287 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00595 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46745 * 294.83179 * 10 9 7 33 33 H 1.09001 * 109.47077 * 54.82764 * 10 9 7 34 34 H 1.08997 * 109.50105 * 305.52916 * 13 11 10 35 35 H 1.08994 * 109.49473 * 65.63341 * 13 11 10 36 36 H 1.08993 * 109.34913 * 301.13419 * 14 13 11 37 37 H 1.09000 * 109.43402 * 181.23922 * 14 13 11 38 38 H 1.08994 * 109.49782 * 178.74192 * 15 14 13 39 39 H 1.09006 * 109.49545 * 58.65137 * 15 14 13 40 40 H 1.09005 * 109.58196 * 294.84958 * 16 15 14 41 41 H 1.09003 * 109.70366 * 174.49336 * 16 15 14 42 42 H 1.07999 * 119.62146 * 0.02562 * 21 20 18 43 43 H 1.08004 * 119.40112 * 179.97438 * 22 21 20 44 44 H 1.07994 * 120.03527 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.66890 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.07647 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.03975 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0071 11 6 1.0693 -4.8171 0.1243 12 1 0.4155 -4.6451 0.9794 13 6 1.8385 -6.1273 0.3214 14 6 0.8532 -7.2989 0.3091 15 6 0.1363 -7.3544 -1.0418 16 6 -0.6521 -6.0577 -1.2508 17 7 0.2630 -4.9183 -1.0998 18 6 0.3614 -3.9838 -2.0660 19 8 1.1983 -3.1061 -1.9799 20 6 -0.5467 -4.0259 -3.2284 21 6 -1.9159 -4.1527 -3.0461 22 6 -2.7772 -4.1937 -4.1363 23 6 -2.3052 -4.1103 -5.4127 24 6 -0.9268 -3.9800 -5.6424 25 6 -0.3903 -3.8908 -6.9398 26 6 0.9592 -3.7654 -7.0819 27 7 1.7715 -3.7253 -6.0358 28 6 1.3395 -3.8033 -4.7983 29 6 -0.0327 -3.9294 -4.5436 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6092 -3.7533 -0.9425 33 1 2.7560 -3.6777 0.8298 34 1 2.5586 -6.2515 -0.4873 35 1 2.3636 -6.1007 1.2761 36 1 0.1200 -7.1625 1.1039 37 1 1.3955 -8.2304 0.4711 38 1 -0.5481 -8.2026 -1.0559 39 1 0.8710 -7.4660 -1.8393 40 1 -1.4465 -5.9893 -0.5075 41 1 -1.0856 -6.0482 -2.2509 42 1 -2.3172 -4.2204 -2.0457 43 1 -3.8396 -4.2933 -3.9692 44 1 -2.9913 -4.1444 -6.2461 45 1 -1.0349 -3.9210 -7.8058 46 1 1.3782 -3.6959 -8.0749 47 1 2.0405 -3.7657 -3.9775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275042776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = 53.147378 kcal Electronic energy + Delta-G solvation = -30622.579892 eV Core-core repulsion = 26771.116764 eV Total energy + Delta-G solvation = -3851.463128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20173 -41.05961 -38.38820 -38.08354 -36.36230 -34.36178 -33.65316 -33.32611 -32.20834 -31.53689 -30.57270 -27.76034 -26.13176 -25.32273 -24.65120 -24.35957 -24.22284 -22.64059 -21.55380 -20.29803 -19.29856 -18.85047 -18.15081 -17.76419 -17.23839 -16.85185 -16.64558 -16.01658 -15.72757 -15.62852 -15.48770 -15.28911 -15.12332 -15.02070 -14.79568 -14.73401 -14.27104 -14.12798 -13.74111 -13.59703 -13.46597 -13.18678 -13.03544 -12.90535 -12.82409 -12.68094 -12.37852 -12.13243 -12.07767 -11.88207 -11.73095 -11.51248 -11.37436 -11.12384 -10.91111 -10.52805 -10.13141 -9.93277 -9.49376 -9.00583 -8.63223 -7.86689 -5.04445 -0.79490 -0.10699 0.70241 1.39774 1.42624 1.51455 1.87261 2.04271 2.18842 2.58984 3.04358 3.41716 3.46877 3.49212 3.68133 3.77505 3.82280 3.88156 3.89254 3.97727 4.05258 4.11753 4.23140 4.34147 4.38665 4.41436 4.48371 4.57962 4.64658 4.67811 4.75254 4.80781 4.87614 4.89922 4.98608 5.04849 5.05928 5.11509 5.14458 5.24161 5.28508 5.34024 5.36579 5.49668 5.52939 5.63927 5.80202 5.84521 6.35211 6.58566 6.96204 7.40820 7.47266 8.21024 8.44099 9.38212 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008204 B = 0.005339 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.250436 B = 5243.403333 C = 7165.859303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.083 4.083 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.302 1.302 6 H -0.289 1.289 7 C -0.207 4.207 8 H 0.060 0.940 9 N -0.702 5.702 10 C 0.161 3.839 11 C 0.148 3.852 12 H 0.068 0.932 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.128 4.128 16 C 0.100 3.900 17 N -0.604 5.604 18 C 0.514 3.486 19 O -0.495 6.495 20 C -0.107 4.107 21 C -0.081 4.081 22 C -0.099 4.099 23 C -0.087 4.087 24 C -0.046 4.046 25 C -0.138 4.138 26 C 0.052 3.948 27 N -0.514 5.514 28 C 0.128 3.872 29 C -0.097 4.097 30 H 0.244 0.756 31 H 0.368 0.632 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.184 0.816 46 H 0.182 0.818 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -20.727 -10.171 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.230 1.230 6 H -0.216 1.216 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.342 5.342 10 C 0.035 3.965 11 C 0.045 3.955 12 H 0.086 0.914 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.166 4.166 16 C -0.022 4.022 17 N -0.341 5.341 18 C 0.301 3.699 19 O -0.368 6.368 20 C -0.112 4.112 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.105 4.105 24 C -0.051 4.051 25 C -0.157 4.157 26 C -0.092 4.092 27 N -0.222 5.222 28 C -0.042 4.042 29 C -0.100 4.100 30 H 0.053 0.947 31 H 0.199 0.801 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.157 0.843 43 H 0.190 0.810 44 H 0.194 0.806 45 H 0.202 0.798 46 H 0.199 0.801 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.598 -20.067 -10.412 23.850 hybrid contribution -0.249 1.557 0.409 1.629 sum -7.847 -18.510 -10.003 22.456 Atomic orbital electron populations 1.69809 1.06208 1.24962 1.61467 1.25318 0.96361 1.00260 1.05504 0.85199 0.78108 0.80886 0.76489 1.19724 1.22996 1.21596 1.19488 0.90738 0.85833 1.37941 0.92196 1.42317 1.04734 1.00565 1.86607 1.20947 0.93913 0.84943 0.96731 1.21396 0.92334 0.95624 0.86176 0.91449 1.21877 0.98298 0.93123 1.02598 1.21497 0.98198 0.97618 0.97570 1.21899 0.99941 0.97057 0.97689 1.22088 0.92052 0.84718 1.03333 1.47878 1.43347 1.24946 1.17880 1.18645 0.85552 0.82161 0.83579 1.91203 1.35115 1.35158 1.75367 1.20049 0.95398 1.03656 0.92130 1.21676 0.91069 0.95888 1.01306 1.21327 1.01632 0.97481 0.91325 1.21538 0.92687 0.97110 0.99139 1.18527 0.94961 0.98832 0.92796 1.22352 0.96790 0.99509 0.97078 1.22799 0.91249 0.97159 0.97973 1.67418 1.42086 1.12893 0.99828 1.23044 0.93475 0.93524 0.94114 1.18881 0.95047 1.02452 0.93579 0.94721 0.80072 0.96240 0.96649 0.92542 0.89759 0.90826 0.89781 0.87914 0.92816 0.90071 0.89198 0.84267 0.80995 0.80553 0.79834 0.80104 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.13 13.06 21.65 0.28 -63.85 16 2 C -0.08 -5.28 5.50 84.86 0.47 -4.82 16 3 Si 0.96 51.30 29.55 68.60 2.03 53.33 16 4 H -0.27 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.30 -16.29 7.11 99.48 0.71 -15.58 16 6 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 7 C -0.21 -12.90 9.70 84.03 0.82 -12.08 16 8 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.70 -39.34 3.22 -343.44 -1.10 -40.44 16 10 C 0.16 7.30 4.87 86.38 0.42 7.72 16 11 C 0.15 4.99 2.93 44.97 0.13 5.12 16 12 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 13 C -0.12 -2.97 5.38 30.69 0.16 -2.80 16 14 C -0.11 -1.93 5.88 30.64 0.18 -1.75 16 15 C -0.13 -2.17 6.08 30.67 0.19 -1.98 16 16 C 0.10 2.14 5.33 86.36 0.46 2.60 16 17 N -0.60 -19.42 2.97 -798.72 -2.38 -21.80 16 18 C 0.51 20.61 5.99 86.70 0.52 21.13 16 19 O -0.50 -25.49 9.21 -3.98 -0.04 -25.53 16 20 C -0.11 -3.64 4.80 -19.89 -0.10 -3.74 16 21 C -0.08 -2.08 7.58 22.57 0.17 -1.91 16 22 C -0.10 -1.79 9.93 22.01 0.22 -1.58 16 23 C -0.09 -1.55 9.79 22.34 0.22 -1.33 16 24 C -0.05 -1.16 5.74 -21.30 -0.12 -1.29 16 25 C -0.14 -2.88 9.88 22.41 0.22 -2.66 16 26 C 0.05 1.31 11.07 84.13 0.93 2.25 16 27 N -0.51 -17.97 10.30 -195.73 -2.02 -19.98 16 28 C 0.13 4.92 10.46 85.23 0.89 5.81 16 29 C -0.10 -3.29 5.76 -21.14 -0.12 -3.41 16 30 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.37 21.85 6.98 -92.71 -0.65 21.20 16 32 H 0.02 0.99 6.36 -2.38 -0.02 0.98 16 33 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.09 1.83 5.21 -2.39 -0.01 1.82 16 42 H 0.14 3.31 7.43 -2.91 -0.02 3.28 16 43 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 47 H 0.14 5.92 6.33 -2.91 -0.02 5.90 16 Total: -1.00 -86.35 370.26 2.78 -83.57 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.34 Total: 29.42 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.66 Total: 5.29 kcal Atomic # 7 Polarization: -140.86 SS G_CDS: -5.21 Total: -146.07 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.04 Total: -25.53 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.03 Total: 53.33 kcal Total: -86.35 2.78 -83.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275042776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.716 kcal (2) G-P(sol) polarization free energy of solvation -86.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds