Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99549 * 2 1 4 4 H 1.48498 * 109.47147 * 269.99680 * 3 2 1 5 5 H 1.48503 * 109.47540 * 29.99444 * 3 2 1 6 6 H 1.48499 * 109.47402 * 149.99898 * 3 2 1 7 7 C 1.38806 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99701 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00624 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00578 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47248 * 179.97438 * 10 9 7 12 12 H 1.08993 * 112.85169 * 316.19661 * 11 10 9 13 13 C 1.53779 * 113.61062 * 87.50643 * 11 10 9 14 14 C 1.53786 * 87.08281 * 139.98189 * 13 11 10 15 15 H 1.08997 * 113.68902 * 220.00847 * 14 13 11 16 16 N 1.46497 * 113.61592 * 89.11032 * 14 13 11 17 17 C 1.34773 * 119.99468 * 107.50544 * 16 14 13 18 18 O 1.21283 * 120.00553 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99942 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.47406 * 180.02562 * 19 17 16 21 21 C 1.39377 * 119.49047 * 270.02018 * 20 19 17 22 22 C 1.36165 * 121.09055 * 179.97438 * 21 20 19 23 23 C 1.40376 * 119.51476 * 359.97438 * 22 21 20 24 24 C 1.40429 * 122.08650 * 179.97438 * 23 22 21 25 25 N 1.31244 * 119.88488 * 180.02562 * 24 23 22 26 26 C 1.32603 * 122.77603 * 0.02562 * 25 24 23 27 27 C 1.36166 * 121.87775 * 359.97438 * 26 25 24 28 28 C 1.40691 * 118.66956 * 0.02562 * 27 26 25 29 29 C 1.36213 * 119.49245 * 89.99724 * 20 19 17 30 30 C 1.53780 * 113.61305 * 185.00222 * 11 10 9 31 31 H 0.97001 * 120.00771 * 0.02562 * 1 2 3 32 32 H 0.97009 * 119.99158 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46774 * 59.99986 * 10 9 7 34 34 H 1.09001 * 109.47275 * 300.00692 * 10 9 7 35 35 H 1.08999 * 113.62126 * 25.42928 * 13 11 10 36 36 H 1.09004 * 113.61287 * 254.52434 * 13 11 10 37 37 H 0.96995 * 120.00492 * 287.50717 * 16 14 13 38 38 H 1.08996 * 109.47424 * 59.99965 * 19 17 16 39 39 H 1.09008 * 109.47011 * 300.00229 * 19 17 16 40 40 H 1.08003 * 119.45063 * 359.95832 * 21 20 19 41 41 H 1.08002 * 120.24494 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.05594 * 0.29616 * 24 23 22 43 43 H 1.08004 * 119.05853 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.66651 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.26136 * 0.04714 * 29 20 19 46 46 H 1.09000 * 113.61864 * 105.47629 * 30 11 10 47 47 H 1.08999 * 113.61579 * 334.56931 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.2383 -4.6702 0.6967 13 6 0.6167 -5.2483 -1.4063 14 6 0.7049 -6.7001 -0.9067 15 1 1.1228 -7.3906 -1.6391 16 7 -0.5383 -7.1908 -0.3067 17 6 -1.2953 -8.0902 -0.9657 18 8 -0.9472 -8.4938 -2.0552 19 6 -2.5744 -8.5947 -0.3489 20 6 -3.2258 -9.5836 -1.2809 21 6 -4.1341 -9.1307 -2.2362 22 6 -4.7411 -9.9956 -3.0950 23 6 -4.4479 -11.3662 -3.0184 24 6 -5.0427 -12.3054 -3.8764 25 7 -4.7373 -13.5771 -3.7665 26 6 -3.8768 -14.0335 -2.8667 27 6 -3.2468 -13.2047 -1.9891 28 6 -3.5229 -11.8263 -2.0453 29 6 -2.9175 -10.9064 -1.1772 30 6 1.7308 -6.1999 0.1241 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6849 -3.7144 0.8906 34 1 2.6850 -3.7144 -0.8894 35 1 1.3402 -5.0101 -2.1860 36 1 -0.3964 -4.9337 -1.6571 37 1 -0.8166 -6.8683 0.5647 38 1 -3.2503 -7.7569 -0.1776 39 1 -2.3524 -9.0824 0.6004 40 1 -4.3602 -8.0763 -2.2960 41 1 -5.4425 -9.6297 -3.8302 42 1 -5.7470 -11.9812 -4.6283 43 1 -3.6693 -15.0927 -2.8294 44 1 -2.5490 -13.5976 -1.2643 45 1 -2.2122 -11.2440 -0.4321 46 1 1.6172 -6.6537 1.1086 47 1 2.7589 -6.2219 -0.2371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277014505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = 43.884501 kcal Electronic energy + Delta-G solvation = -27203.843871 eV Core-core repulsion = 23351.979075 eV Total energy + Delta-G solvation = -3851.864797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19577 -40.26304 -38.67626 -37.53268 -34.56234 -33.48831 -33.24922 -32.75389 -30.87957 -30.10433 -28.51624 -26.69870 -25.53563 -24.33493 -23.72181 -23.07333 -22.55674 -21.46735 -20.87449 -19.12721 -18.13375 -17.49534 -17.31950 -17.01526 -16.90904 -15.95668 -15.41876 -15.26483 -14.96765 -14.63309 -14.56413 -14.37886 -14.20344 -13.94199 -13.78201 -13.71940 -13.36632 -12.99853 -12.84534 -12.48874 -12.31768 -12.23353 -12.15342 -12.03568 -11.64918 -11.37924 -11.05054 -10.84515 -10.53227 -10.51376 -10.36435 -10.12384 -10.05815 -9.85445 -9.81564 -9.62846 -9.22306 -9.05785 -8.85857 -8.38544 -6.91566 -5.77348 -3.05486 0.04298 0.56525 1.61310 2.46678 2.62291 3.11549 3.42769 3.47905 3.49450 3.77604 4.06262 4.14216 4.22246 4.47668 4.52839 4.56593 4.60205 4.64166 4.70745 4.79458 4.82040 4.95152 5.02666 5.08683 5.11389 5.11922 5.27297 5.37832 5.45755 5.57040 5.69616 5.71896 5.74314 5.83523 5.90692 5.98197 6.02000 6.08380 6.15171 6.20671 6.28292 6.30834 6.39751 6.50144 6.60181 6.76536 6.91504 7.37477 7.64778 7.69195 8.08671 8.41936 9.52979 10.11995 10.46380 11.45628 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.001651 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.720003 B =16959.942140 C =17561.837495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.115 3.885 15 H 0.098 0.902 16 N -0.709 5.709 17 C 0.516 3.484 18 O -0.533 6.533 19 C -0.110 4.110 20 C -0.037 4.037 21 C -0.101 4.101 22 C -0.087 4.087 23 C -0.113 4.113 24 C 0.146 3.854 25 N -0.493 5.493 26 C 0.072 3.928 27 C -0.154 4.154 28 C -0.021 4.021 29 C -0.101 4.101 30 C -0.138 4.138 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.069 0.931 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -26.836 -0.731 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.177 4.177 14 C 0.010 3.990 15 H 0.116 0.884 16 N -0.360 5.360 17 C 0.302 3.698 18 O -0.409 6.409 19 C -0.150 4.150 20 C -0.039 4.039 21 C -0.119 4.119 22 C -0.106 4.106 23 C -0.115 4.115 24 C -0.025 4.025 25 N -0.201 5.201 26 C -0.071 4.071 27 C -0.173 4.173 28 C -0.026 4.026 29 C -0.119 4.119 30 C -0.177 4.177 31 H 0.064 0.936 32 H 0.216 0.784 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.237 0.763 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.180 0.820 43 H 0.169 0.831 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.087 0.913 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.453 -27.743 -2.007 29.377 hybrid contribution 0.510 1.898 1.056 2.231 sum -8.943 -25.844 -0.952 27.365 Atomic orbital electron populations 1.69656 1.05108 1.25596 1.57956 1.24733 0.95530 0.97684 1.03124 0.86189 0.78641 0.83843 0.77523 1.21741 1.21782 1.20782 1.19252 0.91048 0.84286 1.42463 0.91236 1.42341 1.05816 0.99991 1.89413 1.20642 0.93029 0.85235 0.97678 1.22751 0.99090 0.94220 0.97069 0.89427 1.23408 1.02455 0.94122 0.97705 1.21948 0.84452 0.95987 0.96602 0.88374 1.45691 1.23759 1.44059 1.22509 1.20410 0.84965 0.78803 0.85616 1.90743 1.71949 1.57731 1.20434 1.20797 0.95415 0.99697 0.99050 1.19128 0.95516 0.93490 0.95777 1.20822 0.96060 1.00266 0.94760 1.20943 0.99437 0.91489 0.98764 1.19046 0.99048 0.95396 0.97974 1.23212 0.95869 0.87786 0.95683 1.67417 1.14559 1.17011 1.21088 1.22151 0.93089 1.00358 0.91511 1.21906 1.01477 0.92825 1.01121 1.18116 0.95552 0.93861 0.95062 1.20759 0.99482 0.92343 0.99309 1.23315 0.98905 0.96606 0.98834 0.93567 0.78358 0.96420 0.96221 0.89160 0.91350 0.76339 0.87281 0.87571 0.85379 0.84721 0.82012 0.83119 0.84543 0.85255 0.91277 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.36 5.60 -59.91 -0.34 -18.70 16 10 C 0.16 3.15 6.10 -4.05 -0.02 3.13 16 11 C -0.11 -1.67 3.63 -89.81 -0.33 -1.99 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.14 -1.99 7.43 -25.92 -0.19 -2.18 16 14 C 0.12 1.38 4.32 -67.11 -0.29 1.09 16 15 H 0.10 1.28 7.46 -51.93 -0.39 0.90 16 16 N -0.71 -7.15 5.26 -53.01 -0.28 -7.43 16 17 C 0.52 5.67 7.82 -10.99 -0.09 5.59 16 18 O -0.53 -8.16 15.63 5.56 0.09 -8.07 16 19 C -0.11 -0.80 5.80 -29.03 -0.17 -0.97 16 20 C -0.04 -0.34 4.34 -104.93 -0.46 -0.79 16 21 C -0.10 -0.90 9.58 -39.90 -0.38 -1.28 16 22 C -0.09 -0.72 9.81 -39.52 -0.39 -1.11 16 23 C -0.11 -1.08 5.74 -106.86 -0.61 -1.69 16 24 C 0.15 1.30 11.05 -16.98 -0.19 1.12 16 25 N -0.49 -5.04 10.30 -13.16 -0.14 -5.18 16 26 C 0.07 0.63 11.07 -17.96 -0.20 0.43 16 27 C -0.15 -1.29 9.88 -39.40 -0.39 -1.68 16 28 C -0.02 -0.20 5.75 -106.81 -0.61 -0.82 16 29 C -0.10 -0.92 9.42 -39.56 -0.37 -1.29 16 30 C -0.14 -1.58 7.39 -25.92 -0.19 -1.77 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.39 7.85 -51.93 -0.41 -0.01 16 35 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 3.11 8.70 -40.82 -0.36 2.76 16 38 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.11 0.51 8.07 -51.92 -0.42 0.09 16 40 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -35.70 396.22 -11.02 -46.73 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.91 Total: 8.37 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -5.13 Total: -11.62 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.03 Total: -58.74 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.70 -11.02 -46.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277014505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.612 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds