Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99549 * 2 1 4 4 H 1.48498 * 109.47147 * 269.99680 * 3 2 1 5 5 H 1.48503 * 109.47540 * 29.99444 * 3 2 1 6 6 H 1.48499 * 109.47402 * 149.99898 * 3 2 1 7 7 C 1.38806 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99701 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00624 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00578 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47248 * 179.97438 * 10 9 7 12 12 H 1.08993 * 112.85169 * 316.19661 * 11 10 9 13 13 C 1.53779 * 113.61062 * 87.50643 * 11 10 9 14 14 C 1.53786 * 87.08281 * 139.98189 * 13 11 10 15 15 H 1.08997 * 113.68902 * 220.00847 * 14 13 11 16 16 N 1.46497 * 113.61592 * 89.11032 * 14 13 11 17 17 C 1.34773 * 119.99468 * 107.50544 * 16 14 13 18 18 O 1.21283 * 120.00553 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99942 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.47406 * 180.02562 * 19 17 16 21 21 C 1.39377 * 119.49047 * 270.02018 * 20 19 17 22 22 C 1.36165 * 121.09055 * 179.97438 * 21 20 19 23 23 C 1.40376 * 119.51476 * 359.97438 * 22 21 20 24 24 C 1.40429 * 122.08650 * 179.97438 * 23 22 21 25 25 N 1.31244 * 119.88488 * 180.02562 * 24 23 22 26 26 C 1.32603 * 122.77603 * 0.02562 * 25 24 23 27 27 C 1.36166 * 121.87775 * 359.97438 * 26 25 24 28 28 C 1.40691 * 118.66956 * 0.02562 * 27 26 25 29 29 C 1.36213 * 119.49245 * 89.99724 * 20 19 17 30 30 C 1.53780 * 113.61305 * 185.00222 * 11 10 9 31 31 H 0.97001 * 120.00771 * 0.02562 * 1 2 3 32 32 H 0.97009 * 119.99158 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46774 * 59.99986 * 10 9 7 34 34 H 1.09001 * 109.47275 * 300.00692 * 10 9 7 35 35 H 1.08999 * 113.62126 * 25.42928 * 13 11 10 36 36 H 1.09004 * 113.61287 * 254.52434 * 13 11 10 37 37 H 0.96995 * 120.00492 * 287.50717 * 16 14 13 38 38 H 1.08996 * 109.47424 * 59.99965 * 19 17 16 39 39 H 1.09008 * 109.47011 * 300.00229 * 19 17 16 40 40 H 1.08003 * 119.45063 * 359.95832 * 21 20 19 41 41 H 1.08002 * 120.24494 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.05594 * 0.29616 * 24 23 22 43 43 H 1.08004 * 119.05853 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.66651 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.26136 * 0.04714 * 29 20 19 46 46 H 1.09000 * 113.61864 * 105.47629 * 30 11 10 47 47 H 1.08999 * 113.61579 * 334.56931 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.2383 -4.6702 0.6967 13 6 0.6167 -5.2483 -1.4063 14 6 0.7049 -6.7001 -0.9067 15 1 1.1228 -7.3906 -1.6391 16 7 -0.5383 -7.1908 -0.3067 17 6 -1.2953 -8.0902 -0.9657 18 8 -0.9472 -8.4938 -2.0552 19 6 -2.5744 -8.5947 -0.3489 20 6 -3.2258 -9.5836 -1.2809 21 6 -4.1341 -9.1307 -2.2362 22 6 -4.7411 -9.9956 -3.0950 23 6 -4.4479 -11.3662 -3.0184 24 6 -5.0427 -12.3054 -3.8764 25 7 -4.7373 -13.5771 -3.7665 26 6 -3.8768 -14.0335 -2.8667 27 6 -3.2468 -13.2047 -1.9891 28 6 -3.5229 -11.8263 -2.0453 29 6 -2.9175 -10.9064 -1.1772 30 6 1.7308 -6.1999 0.1241 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6849 -3.7144 0.8906 34 1 2.6850 -3.7144 -0.8894 35 1 1.3402 -5.0101 -2.1860 36 1 -0.3964 -4.9337 -1.6571 37 1 -0.8166 -6.8683 0.5647 38 1 -3.2503 -7.7569 -0.1776 39 1 -2.3524 -9.0824 0.6004 40 1 -4.3602 -8.0763 -2.2960 41 1 -5.4425 -9.6297 -3.8302 42 1 -5.7470 -11.9812 -4.6283 43 1 -3.6693 -15.0927 -2.8294 44 1 -2.5490 -13.5976 -1.2643 45 1 -2.2122 -11.2440 -0.4321 46 1 1.6172 -6.6537 1.1086 47 1 2.7589 -6.2219 -0.2371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277014505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = 21.234349 kcal Electronic energy + Delta-G solvation = -27204.826056 eV Core-core repulsion = 23351.979075 eV Total energy + Delta-G solvation = -3852.846981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84490 -41.19135 -39.64952 -38.27320 -36.32539 -34.46270 -34.03597 -33.52908 -32.71594 -30.73035 -29.33770 -28.19619 -26.61532 -25.33934 -24.89176 -24.05660 -23.22401 -22.85912 -21.70151 -20.29068 -19.06068 -18.75378 -18.22017 -18.00253 -17.57770 -16.93347 -16.66510 -16.22512 -15.90470 -15.76868 -15.68594 -15.23619 -15.14468 -15.08836 -14.83148 -14.67470 -14.41333 -14.37018 -13.73706 -13.57997 -13.40395 -13.12383 -12.98044 -12.93331 -12.82238 -12.68943 -12.64414 -12.17372 -11.96323 -11.92261 -11.73135 -11.34201 -11.16810 -11.13389 -10.97861 -10.85105 -10.47763 -10.00745 -9.89493 -9.00834 -8.97264 -7.95047 -5.23017 -0.58072 -0.09914 0.97659 1.47280 1.48814 1.57220 1.63491 1.93780 2.35356 2.56253 3.12268 3.38028 3.48451 3.55962 3.61064 3.61272 3.63817 3.87687 3.92165 3.94467 3.95232 3.99972 4.10677 4.23851 4.34586 4.37334 4.50213 4.58533 4.61898 4.70528 4.77739 4.79703 4.85332 4.85970 4.93625 4.94118 5.00121 5.12559 5.13006 5.16815 5.28918 5.38264 5.39236 5.49884 5.52324 5.70388 5.70743 5.89508 6.27980 6.58747 7.00561 7.28222 7.34103 8.12209 8.34637 9.28422 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.001651 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.720003 B =16959.942140 C =17561.837495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.109 4.109 12 H 0.089 0.911 13 C -0.144 4.144 14 C 0.127 3.873 15 H 0.089 0.911 16 N -0.701 5.701 17 C 0.516 3.484 18 O -0.580 6.580 19 C -0.101 4.101 20 C -0.049 4.049 21 C -0.118 4.118 22 C -0.090 4.090 23 C -0.131 4.131 24 C 0.139 3.861 25 N -0.518 5.518 26 C 0.058 3.942 27 C -0.157 4.157 28 C -0.043 4.043 29 C -0.111 4.111 30 C -0.117 4.117 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.157 0.843 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.145 0.855 46 H 0.094 0.906 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 -27.572 0.454 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.128 4.128 12 H 0.108 0.892 13 C -0.183 4.183 14 C 0.021 3.979 15 H 0.107 0.893 16 N -0.352 5.352 17 C 0.304 3.696 18 O -0.460 6.460 19 C -0.141 4.141 20 C -0.051 4.051 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.032 4.032 25 N -0.227 5.227 26 C -0.084 4.084 27 C -0.177 4.177 28 C -0.048 4.048 29 C -0.129 4.129 30 C -0.155 4.155 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.203 0.797 43 H 0.189 0.811 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.112 0.888 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.954 -28.503 -0.787 29.886 hybrid contribution 0.384 2.088 0.651 2.221 sum -8.569 -26.414 -0.136 27.770 Atomic orbital electron populations 1.69806 1.06544 1.26019 1.59589 1.25549 0.96422 1.01050 1.03783 0.85153 0.77770 0.79556 0.77367 1.21596 1.22073 1.19409 1.19666 0.91516 0.85611 1.41116 0.90812 1.42563 1.05599 1.01214 1.89296 1.20840 0.93878 0.84697 0.97377 1.22673 0.98545 0.94156 0.97410 0.89247 1.23412 1.01227 0.96284 0.97333 1.21703 0.85466 0.94096 0.96615 0.89255 1.45628 1.23022 1.43628 1.22941 1.21038 0.85645 0.78045 0.84914 1.90728 1.73232 1.59394 1.22630 1.20845 0.93516 1.00219 0.99480 1.19390 0.95596 0.93918 0.96153 1.21103 0.96410 1.00974 0.95062 1.21245 0.99589 0.91083 0.99057 1.19302 0.99487 0.96118 0.98379 1.23622 0.96056 0.87478 0.96007 1.67448 1.15508 1.17679 1.22016 1.22558 0.92905 1.01570 0.91358 1.22175 1.01663 0.92374 1.01446 1.18466 0.96015 0.94778 0.95556 1.21005 0.99769 0.92471 0.99674 1.23220 0.98822 0.93514 0.99974 0.94039 0.79480 0.96069 0.96474 0.90183 0.92907 0.74659 0.85130 0.84482 0.84349 0.82492 0.79711 0.81061 0.82307 0.83707 0.88754 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -37.42 5.60 -343.46 -1.92 -39.34 16 10 C 0.16 6.06 6.10 86.38 0.53 6.59 16 11 C -0.11 -3.09 3.63 -10.27 -0.04 -3.13 16 12 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.14 -4.08 7.43 31.12 0.23 -3.85 16 14 C 0.13 2.86 4.32 45.52 0.20 3.05 16 15 H 0.09 2.25 7.46 -2.39 -0.02 2.23 16 16 N -0.70 -12.64 5.26 -440.02 -2.32 -14.95 16 17 C 0.52 10.48 7.82 87.66 0.69 11.17 16 18 O -0.58 -17.50 15.63 -3.04 -0.05 -17.55 16 19 C -0.10 -1.23 5.80 29.10 0.17 -1.06 16 20 C -0.05 -0.82 4.34 -20.06 -0.09 -0.91 16 21 C -0.12 -1.98 9.58 22.06 0.21 -1.77 16 22 C -0.09 -1.46 9.81 22.31 0.22 -1.24 16 23 C -0.13 -2.47 5.74 -21.31 -0.12 -2.59 16 24 C 0.14 2.45 11.05 85.31 0.94 3.39 16 25 N -0.52 -10.49 10.30 -195.54 -2.01 -12.51 16 26 C 0.06 0.99 11.07 84.09 0.93 1.92 16 27 C -0.16 -2.54 9.88 22.39 0.22 -2.32 16 28 C -0.04 -0.83 5.75 -21.28 -0.12 -0.95 16 29 C -0.11 -1.92 9.42 22.28 0.21 -1.71 16 30 C -0.12 -2.37 7.39 31.12 0.23 -2.14 16 31 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.37 19.90 7.67 -92.70 -0.71 19.18 16 33 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.02 0.67 7.85 -2.39 -0.02 0.66 16 35 H 0.08 2.42 7.90 -2.39 -0.02 2.40 16 36 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.42 5.21 8.70 -92.71 -0.81 4.41 16 38 H 0.13 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.14 0.82 8.07 -2.38 -0.02 0.80 16 40 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 Total: -1.00 -78.03 396.22 1.20 -76.83 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.52 Total: 30.61 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.71 Total: -12.41 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -5.97 Total: -125.51 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.03 1.20 -76.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277014505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.066 kcal (2) G-P(sol) polarization free energy of solvation -78.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds