Wall clock time and date at job start Sat Apr 11 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99829 * 2 1 4 4 H 1.48502 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 299.99485 * 3 2 1 6 6 H 1.48496 * 109.47415 * 59.99791 * 3 2 1 7 7 C 1.38809 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00389 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47290 * 174.81849 * 10 9 7 12 12 H 1.08997 * 109.70059 * 308.31786 * 11 10 9 13 13 C 1.53193 * 109.58699 * 187.96238 * 11 10 9 14 14 C 1.53042 * 109.31562 * 185.57471 * 13 11 10 15 15 C 1.53039 * 109.53328 * 61.36629 * 14 13 11 16 16 C 1.53628 * 109.24142 * 298.50991 * 15 14 13 17 17 N 1.46923 * 108.54358 * 54.86069 * 16 15 14 18 18 C 1.34773 * 120.63085 * 126.36171 * 17 16 15 19 19 O 1.21593 * 120.00144 * 185.65242 * 18 17 16 20 20 C 1.47549 * 120.00237 * 5.65760 * 18 17 16 21 21 C 1.38707 * 120.38609 * 49.97257 * 20 18 17 22 22 C 1.38965 * 120.53641 * 179.97438 * 21 20 18 23 23 C 1.36212 * 121.23847 * 359.97438 * 22 21 20 24 24 C 1.40710 * 120.19990 * 0.27807 * 23 22 21 25 25 N 1.33685 * 120.93421 * 180.26893 * 24 23 22 26 26 C 1.31071 * 121.33969 * 179.74905 * 25 24 23 27 27 C 1.39340 * 121.70658 * 359.70549 * 26 25 24 28 28 C 1.36671 * 119.86700 * 359.97438 * 27 26 25 29 29 C 1.40475 * 118.17457 * 0.02562 * 28 27 26 30 30 H 0.97003 * 120.00053 * 0.02562 * 1 2 3 31 31 H 0.97008 * 120.00106 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47330 * 54.81651 * 10 9 7 33 33 H 1.09000 * 109.47147 * 294.81273 * 10 9 7 34 34 H 1.08997 * 109.49683 * 305.52972 * 13 11 10 35 35 H 1.09003 * 109.49866 * 65.62333 * 13 11 10 36 36 H 1.08996 * 109.46196 * 181.38731 * 14 13 11 37 37 H 1.09001 * 109.45802 * 301.36311 * 14 13 11 38 38 H 1.09003 * 109.49849 * 58.58897 * 15 14 13 39 39 H 1.09000 * 109.49621 * 178.65446 * 15 14 13 40 40 H 1.08997 * 109.74028 * 295.11624 * 16 15 14 41 41 H 1.09003 * 109.66208 * 174.55199 * 16 15 14 42 42 H 1.08002 * 119.72782 * 0.02562 * 21 20 18 43 43 H 1.07998 * 119.38219 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.89696 * 180.02562 * 23 22 21 45 45 H 1.07999 * 119.14350 * 179.68297 * 26 25 24 46 46 H 1.07993 * 120.06537 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.91435 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0688 -4.8167 0.1317 12 1 0.4107 -4.6446 0.9834 13 6 1.8370 -6.1267 0.3327 14 6 0.8519 -7.2979 0.3227 15 6 0.1415 -7.3574 -1.0315 16 6 -0.6501 -6.0583 -1.2455 17 7 0.2684 -4.9214 -1.0959 18 6 0.3708 -3.9894 -2.0640 19 8 1.2067 -3.1107 -1.9761 20 6 -0.5315 -4.0351 -3.2306 21 6 -1.9018 -4.1568 -3.0533 22 6 -2.7545 -4.1997 -4.1497 23 6 -2.2738 -4.1234 -5.4219 24 6 -0.8904 -4.0045 -5.6498 25 7 -0.4030 -3.9232 -6.8920 26 6 0.8836 -3.8074 -7.1133 27 6 1.8047 -3.7573 -6.0690 28 6 1.3710 -3.8290 -4.7749 29 6 -0.0090 -3.9531 -4.5438 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.7519 -3.6750 0.8421 33 1 2.6139 -3.7562 -0.9306 34 1 2.5596 -6.2522 -0.4737 35 1 2.3596 -6.0991 1.2889 36 1 1.3931 -8.2291 0.4901 37 1 0.1147 -7.1590 1.1135 38 1 0.8800 -7.4713 -1.8251 39 1 -0.5425 -8.2060 -1.0465 40 1 -1.4456 -5.9855 -0.5039 41 1 -1.0799 -6.0515 -2.2472 42 1 -2.3094 -4.2180 -2.0550 43 1 -3.8185 -4.2944 -3.9902 44 1 -2.9562 -4.1584 -6.2583 45 1 1.2391 -3.7497 -8.1315 46 1 2.8591 -3.6611 -6.2817 47 1 2.0701 -3.7914 -3.9525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281872436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:11 Heat of formation + Delta-G solvation = 76.594308 kcal Electronic energy + Delta-G solvation = -30630.082156 eV Core-core repulsion = 26779.635763 eV Total energy + Delta-G solvation = -3850.446393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01105 -39.82848 -37.14192 -36.73041 -34.55217 -33.19813 -32.64451 -31.95619 -30.50453 -29.86171 -29.77359 -26.24578 -24.66498 -24.17252 -23.57077 -23.08899 -22.64627 -21.18689 -20.49127 -19.04608 -18.15753 -17.17059 -16.77930 -16.72596 -15.96457 -15.56201 -14.94547 -14.66673 -14.51394 -14.40739 -14.27954 -14.10579 -13.85460 -13.50966 -13.47663 -13.12418 -13.01345 -12.92672 -12.59374 -12.24091 -12.09140 -11.87577 -11.76682 -11.54491 -11.27503 -11.04379 -10.92156 -10.76084 -10.73587 -10.56766 -10.41467 -10.31136 -9.87643 -9.59488 -9.52954 -8.77405 -8.72708 -8.43198 -8.10711 -8.05164 -6.54745 -5.59464 -2.77630 0.34841 0.88936 1.95323 2.87228 3.30230 3.43364 3.54135 3.57668 3.59910 4.19307 4.31905 4.60030 4.71982 4.78425 4.81750 4.88288 4.90711 4.94020 5.05304 5.09022 5.16808 5.20591 5.37863 5.39888 5.46671 5.52394 5.61275 5.76834 5.79686 5.82984 5.87840 5.89682 5.95593 6.01817 6.04429 6.07275 6.12650 6.16430 6.33298 6.37014 6.44923 6.50398 6.58298 6.64413 6.85706 6.90732 7.23866 7.84451 7.88804 7.93668 8.58540 8.83866 9.69982 10.29095 10.63071 11.64284 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.005325 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.839709 B = 5257.114306 C = 7177.684163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.021 4.021 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.207 4.207 8 H 0.066 0.934 9 N -0.694 5.694 10 C 0.159 3.841 11 C 0.143 3.857 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.133 4.133 16 C 0.106 3.894 17 N -0.609 5.609 18 C 0.512 3.488 19 O -0.431 6.431 20 C -0.076 4.076 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.090 4.090 24 C 0.124 3.876 25 N -0.481 5.481 26 C 0.130 3.870 27 C -0.183 4.183 28 C -0.039 4.039 29 C -0.071 4.071 30 H 0.250 0.750 31 H 0.379 0.621 32 H 0.017 0.983 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.157 0.843 46 H 0.136 0.864 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 -18.025 -7.731 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.336 5.336 10 C 0.032 3.968 11 C 0.040 3.960 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.171 4.171 16 C -0.018 4.018 17 N -0.347 5.347 18 C 0.297 3.703 19 O -0.299 6.299 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.109 4.109 24 C 0.003 3.997 25 N -0.189 5.189 26 C -0.042 4.042 27 C -0.203 4.203 28 C -0.065 4.065 29 C -0.074 4.074 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.174 0.826 46 H 0.154 0.846 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.742 -17.402 -8.315 19.480 hybrid contribution 0.562 1.100 0.658 1.400 sum -2.180 -16.301 -7.657 18.141 Atomic orbital electron populations 1.69660 1.05006 1.24924 1.58939 1.24622 0.95432 0.97287 1.04215 0.86171 0.78742 0.84753 0.76965 1.20777 1.22230 1.22235 1.19196 0.90777 0.84217 1.39726 0.91582 1.42299 1.05383 0.99772 1.86157 1.20922 0.92961 0.84819 0.98116 1.21516 0.93024 0.95567 0.85895 0.91236 1.21908 0.98091 0.94201 1.02379 1.21500 0.98593 0.98250 0.97164 1.21984 0.99788 0.97242 0.98135 1.21861 0.92067 0.85494 1.02363 1.47726 1.43429 1.24811 1.18727 1.18088 0.86449 0.82803 0.82997 1.91222 1.32461 1.32510 1.73721 1.20171 0.94421 1.00529 0.92949 1.21411 0.92136 0.97827 0.99664 1.20803 1.00158 0.99211 0.91931 1.20826 0.92879 0.99599 0.97547 1.18781 0.94054 0.98884 0.88013 1.68016 1.15615 1.13277 1.21995 1.22908 0.88409 0.93343 0.99579 1.21902 1.01554 1.03405 0.93453 1.21725 0.94802 0.91910 0.98057 1.18593 0.94398 1.01412 0.92972 0.94022 0.78702 0.96587 0.94205 0.91588 0.90862 0.92051 0.91844 0.91718 0.91242 0.91784 0.89785 0.84942 0.84963 0.84801 0.82587 0.84588 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.55 13.06 55.49 0.72 -28.83 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 3 Si 0.90 23.73 29.55 -169.99 -5.02 18.71 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 7 C -0.21 -6.07 9.70 -15.06 -0.15 -6.21 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.69 -18.18 3.20 -59.91 -0.19 -18.37 16 10 C 0.16 3.34 4.87 -4.04 -0.02 3.32 16 11 C 0.14 2.32 2.93 -67.60 -0.20 2.13 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -1.58 5.36 -26.61 -0.14 -1.72 16 14 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 15 C -0.13 -1.30 6.10 -26.39 -0.16 -1.46 16 16 C 0.11 1.23 5.37 -3.49 -0.02 1.21 16 17 N -0.61 -9.52 2.97 -166.17 -0.49 -10.01 16 18 C 0.51 9.62 5.97 -12.47 -0.07 9.55 16 19 O -0.43 -10.05 9.19 5.28 0.05 -10.01 16 20 C -0.08 -1.29 4.79 -104.65 -0.50 -1.79 16 21 C -0.09 -1.30 7.59 -39.14 -0.30 -1.59 16 22 C -0.10 -1.22 9.92 -40.04 -0.40 -1.62 16 23 C -0.09 -1.18 9.96 -39.38 -0.39 -1.57 16 24 C 0.12 1.93 6.60 -84.88 -0.56 1.37 16 25 N -0.48 -7.20 10.34 -10.99 -0.11 -7.32 16 26 C 0.13 1.65 11.15 -17.47 -0.19 1.46 16 27 C -0.18 -2.40 10.03 -39.74 -0.40 -2.80 16 28 C -0.04 -0.63 9.26 -39.31 -0.36 -0.99 16 29 C -0.07 -1.19 5.76 -106.53 -0.61 -1.81 16 30 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.38 10.61 6.99 -40.82 -0.29 10.33 16 32 H 0.02 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.04 0.90 6.36 -51.93 -0.33 0.57 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.95 5.21 -51.93 -0.27 0.68 16 42 H 0.13 1.73 7.44 -52.49 -0.39 1.34 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 45 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.15 2.53 6.34 -52.48 -0.33 2.20 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -35.47 370.36 -10.85 -46.32 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.65 Total: 8.52 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.73 Total: -4.59 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.07 Total: -64.52 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.05 Total: -10.01 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.02 Total: 18.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.47 -10.85 -46.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281872436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.912 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds