Wall clock time and date at job start Sat Apr 11 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99829 * 2 1 4 4 H 1.48502 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 299.99485 * 3 2 1 6 6 H 1.48496 * 109.47415 * 59.99791 * 3 2 1 7 7 C 1.38809 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00389 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47290 * 174.81849 * 10 9 7 12 12 H 1.08997 * 109.70059 * 308.31786 * 11 10 9 13 13 C 1.53193 * 109.58699 * 187.96238 * 11 10 9 14 14 C 1.53042 * 109.31562 * 185.57471 * 13 11 10 15 15 C 1.53039 * 109.53328 * 61.36629 * 14 13 11 16 16 C 1.53628 * 109.24142 * 298.50991 * 15 14 13 17 17 N 1.46923 * 108.54358 * 54.86069 * 16 15 14 18 18 C 1.34773 * 120.63085 * 126.36171 * 17 16 15 19 19 O 1.21593 * 120.00144 * 185.65242 * 18 17 16 20 20 C 1.47549 * 120.00237 * 5.65760 * 18 17 16 21 21 C 1.38707 * 120.38609 * 49.97257 * 20 18 17 22 22 C 1.38965 * 120.53641 * 179.97438 * 21 20 18 23 23 C 1.36212 * 121.23847 * 359.97438 * 22 21 20 24 24 C 1.40710 * 120.19990 * 0.27807 * 23 22 21 25 25 N 1.33685 * 120.93421 * 180.26893 * 24 23 22 26 26 C 1.31071 * 121.33969 * 179.74905 * 25 24 23 27 27 C 1.39340 * 121.70658 * 359.70549 * 26 25 24 28 28 C 1.36671 * 119.86700 * 359.97438 * 27 26 25 29 29 C 1.40475 * 118.17457 * 0.02562 * 28 27 26 30 30 H 0.97003 * 120.00053 * 0.02562 * 1 2 3 31 31 H 0.97008 * 120.00106 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47330 * 54.81651 * 10 9 7 33 33 H 1.09000 * 109.47147 * 294.81273 * 10 9 7 34 34 H 1.08997 * 109.49683 * 305.52972 * 13 11 10 35 35 H 1.09003 * 109.49866 * 65.62333 * 13 11 10 36 36 H 1.08996 * 109.46196 * 181.38731 * 14 13 11 37 37 H 1.09001 * 109.45802 * 301.36311 * 14 13 11 38 38 H 1.09003 * 109.49849 * 58.58897 * 15 14 13 39 39 H 1.09000 * 109.49621 * 178.65446 * 15 14 13 40 40 H 1.08997 * 109.74028 * 295.11624 * 16 15 14 41 41 H 1.09003 * 109.66208 * 174.55199 * 16 15 14 42 42 H 1.08002 * 119.72782 * 0.02562 * 21 20 18 43 43 H 1.07998 * 119.38219 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.89696 * 180.02562 * 23 22 21 45 45 H 1.07999 * 119.14350 * 179.68297 * 26 25 24 46 46 H 1.07993 * 120.06537 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.91435 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0688 -4.8167 0.1317 12 1 0.4107 -4.6446 0.9834 13 6 1.8370 -6.1267 0.3327 14 6 0.8519 -7.2979 0.3227 15 6 0.1415 -7.3574 -1.0315 16 6 -0.6501 -6.0583 -1.2455 17 7 0.2684 -4.9214 -1.0959 18 6 0.3708 -3.9894 -2.0640 19 8 1.2067 -3.1107 -1.9761 20 6 -0.5315 -4.0351 -3.2306 21 6 -1.9018 -4.1568 -3.0533 22 6 -2.7545 -4.1997 -4.1497 23 6 -2.2738 -4.1234 -5.4219 24 6 -0.8904 -4.0045 -5.6498 25 7 -0.4030 -3.9232 -6.8920 26 6 0.8836 -3.8074 -7.1133 27 6 1.8047 -3.7573 -6.0690 28 6 1.3710 -3.8290 -4.7749 29 6 -0.0090 -3.9531 -4.5438 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.7519 -3.6750 0.8421 33 1 2.6139 -3.7562 -0.9306 34 1 2.5596 -6.2522 -0.4737 35 1 2.3596 -6.0991 1.2889 36 1 1.3931 -8.2291 0.4901 37 1 0.1147 -7.1590 1.1135 38 1 0.8800 -7.4713 -1.8251 39 1 -0.5425 -8.2060 -1.0465 40 1 -1.4456 -5.9855 -0.5039 41 1 -1.0799 -6.0515 -2.2472 42 1 -2.3094 -4.2180 -2.0550 43 1 -3.8185 -4.2944 -3.9902 44 1 -2.9562 -4.1584 -6.2583 45 1 1.2391 -3.7497 -8.1315 46 1 2.8591 -3.6611 -6.2817 47 1 2.0701 -3.7914 -3.9525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281872436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:10 Heat of formation + Delta-G solvation = 54.222709 kcal Electronic energy + Delta-G solvation = -30631.052261 eV Core-core repulsion = 26779.635763 eV Total energy + Delta-G solvation = -3851.416498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20144 -41.07068 -38.29458 -37.94442 -36.33674 -34.49536 -33.78429 -33.60545 -31.63528 -31.50212 -30.91786 -27.75173 -26.12669 -25.34670 -24.67607 -24.34214 -24.21033 -22.61461 -21.54033 -20.27476 -19.43953 -18.89327 -18.05830 -17.90538 -17.22031 -16.87743 -16.66427 -16.00932 -15.68119 -15.51650 -15.48353 -15.31954 -15.16452 -14.97428 -14.91126 -14.54517 -14.20641 -14.10039 -13.91599 -13.65682 -13.44895 -13.17701 -12.95283 -12.84739 -12.82604 -12.58344 -12.34588 -12.13160 -12.07462 -11.88127 -11.73374 -11.56858 -11.49185 -11.36128 -10.92238 -10.72349 -9.90791 -9.79755 -9.50652 -9.20811 -8.63912 -7.86897 -5.05060 -0.77121 -0.19719 0.77453 1.40145 1.42482 1.51468 1.78011 2.02980 2.15443 2.58696 3.06278 3.31543 3.44042 3.48526 3.73449 3.79943 3.81851 3.87274 3.89389 3.99731 4.04897 4.10066 4.17639 4.33028 4.37362 4.41331 4.45807 4.49328 4.59825 4.73913 4.78992 4.79860 4.87512 4.97260 5.02520 5.04625 5.07232 5.10657 5.13482 5.23141 5.28915 5.31002 5.36193 5.48809 5.51581 5.52356 5.79115 5.83635 6.34514 6.57568 6.84022 7.40029 7.46208 8.20523 8.43169 9.38000 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.005325 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.839709 B = 5257.114306 C = 7177.684163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.084 4.084 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.291 1.291 7 C -0.207 4.207 8 H 0.062 0.938 9 N -0.703 5.703 10 C 0.162 3.838 11 C 0.147 3.853 12 H 0.066 0.934 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.604 5.604 18 C 0.517 3.483 19 O -0.494 6.494 20 C -0.111 4.111 21 C -0.082 4.082 22 C -0.095 4.095 23 C -0.085 4.085 24 C 0.102 3.898 25 N -0.492 5.492 26 C 0.131 3.869 27 C -0.170 4.170 28 C -0.072 4.072 29 C -0.090 4.090 30 H 0.244 0.756 31 H 0.367 0.633 32 H 0.016 0.984 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.142 0.858 43 H 0.175 0.825 44 H 0.160 0.840 45 H 0.199 0.801 46 H 0.165 0.835 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -20.323 -8.894 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.275 4.275 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.218 1.218 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.343 5.343 10 C 0.036 3.964 11 C 0.044 3.956 12 H 0.084 0.916 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.165 4.165 16 C -0.023 4.023 17 N -0.341 5.341 18 C 0.303 3.697 19 O -0.367 6.367 20 C -0.116 4.116 21 C -0.101 4.101 22 C -0.114 4.114 23 C -0.103 4.103 24 C -0.018 4.018 25 N -0.200 5.200 26 C -0.041 4.041 27 C -0.190 4.190 28 C -0.098 4.098 29 C -0.093 4.093 30 H 0.053 0.947 31 H 0.198 0.802 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.160 0.840 43 H 0.192 0.808 44 H 0.178 0.822 45 H 0.216 0.784 46 H 0.182 0.818 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.895 -19.792 -9.469 22.283 hybrid contribution 0.923 1.650 0.859 2.076 sum -2.972 -18.142 -8.610 20.300 Atomic orbital electron populations 1.69815 1.06307 1.24988 1.61441 1.25340 0.96335 1.00358 1.05507 0.85182 0.78150 0.80796 0.76448 1.19508 1.22980 1.21795 1.19488 0.90765 0.85755 1.37966 0.92030 1.42324 1.04724 1.00621 1.86644 1.20937 0.93854 0.84838 0.96773 1.21412 0.92432 0.95735 0.86020 0.91606 1.21862 0.98264 0.93031 1.02634 1.21495 0.98234 0.97706 0.97477 1.21969 0.99908 0.96915 0.97723 1.22179 0.92025 0.84840 1.03243 1.47879 1.43400 1.25153 1.17623 1.18573 0.85477 0.82106 0.83513 1.91189 1.35052 1.34882 1.75549 1.20130 0.95349 1.03755 0.92324 1.21660 0.91240 0.96122 1.01062 1.21190 1.01808 0.97716 0.90672 1.21223 0.92198 0.97990 0.98893 1.19144 0.95106 0.99667 0.87924 1.68094 1.16704 1.13664 1.21519 1.23589 0.87628 0.91673 1.01225 1.22257 1.03290 1.01093 0.92332 1.21685 0.94724 0.94604 0.98799 1.18781 0.94906 1.02118 0.93472 0.94746 0.80151 0.96661 0.96043 0.92359 0.89780 0.89717 0.90924 0.92673 0.88094 0.90125 0.89339 0.84008 0.80794 0.82239 0.78387 0.81783 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.97 13.06 21.65 0.28 -63.68 16 2 C -0.08 -5.29 5.50 84.86 0.47 -4.82 16 3 Si 0.96 50.57 29.55 68.60 2.03 52.60 16 4 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 6 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 7 C -0.21 -12.67 9.70 84.03 0.82 -11.86 16 8 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.70 -38.85 3.20 -343.47 -1.10 -39.95 16 10 C 0.16 7.19 4.87 86.38 0.42 7.61 16 11 C 0.15 4.89 2.93 44.98 0.13 5.02 16 12 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.12 -2.86 5.36 30.67 0.16 -2.69 16 14 C -0.11 -1.90 5.88 30.62 0.18 -1.72 16 15 C -0.13 -2.15 6.10 30.82 0.19 -1.96 16 16 C 0.10 2.15 5.37 86.51 0.46 2.62 16 17 N -0.60 -19.27 2.97 -797.91 -2.37 -21.64 16 18 C 0.52 20.52 5.97 86.70 0.52 21.03 16 19 O -0.49 -24.83 9.19 -4.01 -0.04 -24.86 16 20 C -0.11 -3.87 4.79 -19.89 -0.10 -3.97 16 21 C -0.08 -2.26 7.59 22.56 0.17 -2.09 16 22 C -0.09 -2.04 9.92 21.97 0.22 -1.82 16 23 C -0.08 -2.04 9.96 22.40 0.22 -1.82 16 24 C 0.10 3.11 6.60 40.27 0.27 3.38 16 25 N -0.49 -13.96 10.34 -188.68 -1.95 -15.91 16 26 C 0.13 3.09 11.15 85.07 0.95 4.04 16 27 C -0.17 -4.39 10.03 22.17 0.22 -4.17 16 28 C -0.07 -2.44 9.26 22.45 0.21 -2.23 16 29 C -0.09 -3.11 5.76 -21.10 -0.12 -3.23 16 30 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.37 21.68 6.99 -92.70 -0.65 21.04 16 32 H 0.02 0.68 8.13 -2.39 -0.02 0.66 16 33 H 0.02 1.05 6.36 -2.39 -0.02 1.04 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.87 5.21 -2.39 -0.01 1.86 16 42 H 0.14 3.54 7.44 -2.91 -0.02 3.51 16 43 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 44 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 47 H 0.12 4.65 6.34 -2.91 -0.02 4.63 16 Total: -1.00 -83.15 370.36 2.59 -80.56 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.34 Total: 31.58 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 5.39 Total: 1.30 kcal Atomic # 7 Polarization: -136.05 SS G_CDS: -5.13 Total: -141.18 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.04 Total: -24.86 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.03 Total: 52.60 kcal Total: -83.15 2.59 -80.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281872436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.784 kcal (2) G-P(sol) polarization free energy of solvation -83.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds