Wall clock time and date at job start Sat Apr 11 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48496 * 109.47330 * 90.00134 * 3 2 1 5 5 H 1.48500 * 109.47068 * 210.00242 * 3 2 1 6 6 H 1.48509 * 109.47000 * 329.99949 * 3 2 1 7 7 C 1.38803 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00255 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99871 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46853 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43587 * 307.53895 * 11 10 9 13 13 C 1.54885 * 110.49201 * 70.22674 * 11 10 9 14 14 C 1.54885 * 102.75153 * 156.61910 * 13 11 10 15 15 C 1.54256 * 104.19878 * 322.05756 * 14 13 11 16 16 H 1.08995 * 110.07765 * 142.91727 * 15 14 13 17 17 N 1.46500 * 110.03378 * 264.33015 * 15 14 13 18 18 C 1.34784 * 119.99551 * 272.16466 * 17 15 14 19 19 O 1.21539 * 120.00083 * 359.97438 * 18 17 15 20 20 C 1.47948 * 119.99958 * 180.02562 * 18 17 15 21 21 N 1.32198 * 120.15711 * 354.68804 * 20 18 17 22 22 C 1.32032 * 122.67825 * 180.02562 * 21 20 18 23 23 C 1.36688 * 122.03135 * 0.02562 * 22 21 20 24 24 C 1.40528 * 118.84616 * 359.97438 * 23 22 21 25 25 C 1.40326 * 122.22321 * 179.97438 * 24 23 22 26 26 C 1.36211 * 119.44906 * 179.05912 * 25 24 23 27 27 C 1.39389 * 120.99919 * 0.98060 * 26 25 24 28 28 C 1.36255 * 121.08086 * 359.33265 * 27 26 25 29 29 C 1.40097 * 119.53945 * 0.03610 * 28 27 26 30 30 C 1.53879 * 106.59718 * 23.60644 * 15 14 13 31 31 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99925 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47100 * 300.00047 * 10 9 7 34 34 H 1.08992 * 109.47128 * 60.00309 * 10 9 7 35 35 H 1.09004 * 110.75470 * 274.93662 * 13 11 10 36 36 H 1.09000 * 110.75533 * 38.29848 * 13 11 10 37 37 H 1.09001 * 110.48366 * 203.37750 * 14 13 11 38 38 H 1.08998 * 110.60093 * 80.79484 * 14 13 11 39 39 H 0.96991 * 120.00727 * 92.16615 * 17 15 14 40 40 H 1.07997 * 118.98411 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.57341 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.27072 * 0.02562 * 25 24 23 43 43 H 1.07997 * 119.49772 * 180.31799 * 26 25 24 44 44 H 1.08004 * 119.45669 * 179.36982 * 27 26 25 45 45 H 1.08003 * 120.23020 * 180.02562 * 28 27 26 46 46 H 1.08993 * 110.03356 * 240.71284 * 30 15 14 47 47 H 1.09002 * 110.06894 * 119.30653 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 1 5.8767 -1.5099 -0.8110 13 6 6.0597 -1.6096 1.3642 14 6 7.5676 -1.9600 1.4116 15 6 7.6509 -3.3609 0.7712 16 1 8.5576 -3.4451 0.1722 17 7 7.6408 -4.3905 1.8133 18 6 8.7978 -4.7886 2.3784 19 8 9.8495 -4.2938 2.0231 20 6 8.7878 -5.8288 3.4304 21 7 7.6403 -6.2946 3.8929 22 6 7.5732 -7.2216 4.8307 23 6 8.6937 -7.7670 5.3923 24 6 9.9545 -7.3258 4.9556 25 6 11.1501 -7.8366 5.4836 26 6 12.3416 -7.3820 5.0050 27 6 12.3907 -6.4032 4.0138 28 6 11.2493 -5.8809 3.4838 29 6 10.0050 -6.3334 3.9419 30 6 6.4101 -3.5080 -0.1270 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.8491 -3.0422 0.8891 34 1 3.8485 -3.0426 -0.8908 35 1 5.9129 -0.5298 1.3901 36 1 5.5249 -2.0928 2.1819 37 1 7.9200 -1.9903 2.4426 38 1 8.1468 -1.2408 0.8325 39 1 6.8016 -4.7857 2.0966 40 1 6.6032 -7.5587 5.1649 41 1 8.6114 -8.5245 6.1577 42 1 11.1257 -8.5952 6.2519 43 1 13.2622 -7.7784 5.4071 44 1 13.3493 -6.0535 3.6598 45 1 11.3034 -5.1233 2.7161 46 1 5.8007 -4.3454 0.2124 47 1 6.7141 -3.6632 -1.1622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284209331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:18 Heat of formation + Delta-G solvation = 30.470433 kcal Electronic energy + Delta-G solvation = -28132.397536 eV Core-core repulsion = 24279.951062 eV Total energy + Delta-G solvation = -3852.446474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49888 -39.85610 -38.10219 -37.75161 -34.99519 -33.54083 -33.21482 -31.55748 -31.30599 -30.12249 -29.03971 -28.05614 -25.44889 -24.39369 -23.91237 -23.15366 -21.87212 -21.33969 -20.20745 -19.76296 -18.55767 -17.79414 -17.49753 -17.45473 -16.50059 -16.21261 -15.64708 -15.27839 -15.15371 -14.90752 -14.40699 -14.17532 -14.13177 -14.07793 -13.66017 -13.41561 -13.24610 -13.15239 -12.67636 -12.53047 -12.24302 -12.15517 -11.90638 -11.79967 -11.69799 -11.27653 -10.91111 -10.89780 -10.56947 -10.53661 -10.36620 -10.34141 -10.28320 -10.01556 -9.72236 -9.55944 -9.52593 -9.20308 -8.86040 -8.47145 -7.18920 -5.74066 -3.08867 -0.32305 0.48477 1.34131 2.33319 2.82967 2.89668 3.39434 3.42292 3.47148 3.72996 3.79627 4.16020 4.32755 4.37703 4.47920 4.60972 4.61650 4.65757 4.72913 4.80579 4.92173 4.97959 5.04029 5.29575 5.33255 5.41496 5.51128 5.53410 5.56845 5.62669 5.64365 5.67892 5.75737 5.84382 5.93990 5.96118 5.99873 6.02988 6.09808 6.18769 6.25376 6.39088 6.43647 6.47425 6.55238 6.72859 6.84913 7.18700 7.48337 7.96920 8.02911 8.45335 9.25027 9.97556 10.17863 11.44509 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.002099 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.143633 B =13333.612520 C =14005.000579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.138 3.862 16 H 0.092 0.908 17 N -0.694 5.694 18 C 0.573 3.427 19 O -0.532 6.532 20 C 0.123 3.877 21 N -0.454 5.454 22 C 0.075 3.925 23 C -0.131 4.131 24 C -0.032 4.032 25 C -0.119 4.119 26 C -0.094 4.094 27 C -0.123 4.123 28 C -0.091 4.091 29 C -0.072 4.072 30 C -0.122 4.122 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.173 0.827 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.386 -17.719 10.654 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.121 4.121 12 H 0.095 0.905 13 C -0.153 4.153 14 C -0.171 4.171 15 C 0.034 3.966 16 H 0.110 0.890 17 N -0.344 5.344 18 C 0.358 3.642 19 O -0.410 6.410 20 C -0.029 4.029 21 N -0.165 5.165 22 C -0.071 4.071 23 C -0.151 4.151 24 C -0.037 4.037 25 C -0.137 4.137 26 C -0.113 4.113 27 C -0.141 4.141 28 C -0.110 4.110 29 C -0.075 4.075 30 C -0.161 4.161 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.180 0.820 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.190 0.810 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.019 -17.176 10.091 32.770 hybrid contribution 0.785 0.559 0.693 1.187 sum 26.804 -16.617 10.785 33.329 Atomic orbital electron populations 1.69706 1.05089 1.25748 1.57823 1.24677 0.95252 0.97206 1.02211 0.86541 0.79214 0.84995 0.77761 1.21104 1.20333 1.21785 1.19070 0.80743 0.94687 1.42665 0.89280 1.42704 1.03963 1.02305 1.91105 1.20671 0.87875 0.89233 0.98453 1.22230 0.96187 0.95877 0.97815 0.90498 1.22545 0.94059 1.01194 0.97487 1.22786 0.97673 0.95671 1.01001 1.21763 0.99779 0.86951 0.88059 0.89004 1.46125 1.09327 1.40136 1.38854 1.17746 0.84340 0.81130 0.80938 1.90579 1.30493 1.56882 1.63015 1.21390 0.88723 0.96338 0.96454 1.67282 1.28395 1.10217 1.10638 1.22232 0.99230 0.92875 0.92793 1.22176 0.92227 1.00303 1.00361 1.18215 0.94512 0.95593 0.95367 1.20943 0.91278 1.00839 1.00676 1.21097 0.98125 0.96129 0.95980 1.21141 0.99140 0.96879 0.96961 1.22193 0.90373 0.98996 0.99444 1.18695 0.94491 0.97229 0.97038 1.22447 0.95092 0.99030 0.99502 0.93124 0.80677 0.95470 0.95677 0.91444 0.91053 0.91532 0.90776 0.75030 0.82020 0.83900 0.84956 0.85490 0.85356 0.80984 0.90543 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.67 13.97 55.49 0.78 -28.90 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 6 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 7 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.96 5.30 -59.91 -0.32 -18.28 16 10 C 0.16 3.11 5.54 -4.04 -0.02 3.09 16 11 C -0.10 -1.49 2.89 -88.96 -0.26 -1.75 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.12 -1.63 6.19 -24.74 -0.15 -1.78 16 14 C -0.13 -1.62 6.54 -25.08 -0.16 -1.78 16 15 C 0.14 1.59 3.25 -66.82 -0.22 1.37 16 16 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 17 N -0.69 -7.92 5.02 -53.63 -0.27 -8.19 16 18 C 0.57 7.16 7.77 -12.28 -0.10 7.07 16 19 O -0.53 -7.42 13.09 5.33 0.07 -7.35 16 20 C 0.12 1.45 6.81 -82.55 -0.56 0.88 16 21 N -0.45 -4.96 9.52 -9.81 -0.09 -5.05 16 22 C 0.07 0.63 11.06 -18.03 -0.20 0.43 16 23 C -0.13 -0.96 9.88 -39.28 -0.39 -1.35 16 24 C -0.03 -0.29 5.75 -106.82 -0.61 -0.90 16 25 C -0.12 -0.83 9.82 -39.53 -0.39 -1.22 16 26 C -0.09 -0.62 9.95 -39.88 -0.40 -1.02 16 27 C -0.12 -0.97 9.95 -39.87 -0.40 -1.37 16 28 C -0.09 -0.94 9.23 -39.60 -0.37 -1.31 16 29 C -0.07 -0.79 5.76 -106.59 -0.61 -1.40 16 30 C -0.12 -1.42 6.14 -25.61 -0.16 -1.58 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.36 8.38 5.50 -40.82 -0.22 8.16 16 33 H 0.03 0.52 8.02 -51.93 -0.42 0.11 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.06 7.96 -51.93 -0.41 0.64 16 37 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.41 4.47 7.68 -40.82 -0.31 4.15 16 40 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 45 H 0.17 1.97 4.96 -52.49 -0.26 1.71 16 46 H 0.08 0.86 7.31 -51.93 -0.38 0.48 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -33.91 382.28 -10.67 -44.58 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.64 Total: 9.51 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -5.24 Total: -9.72 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.10 Total: -60.42 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.07 Total: -7.35 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.91 -10.67 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284209331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.048 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds