Wall clock time and date at job start Sat Apr 11 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48509 * 109.47072 * 269.99886 * 3 2 1 5 5 H 1.48494 * 109.47229 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.46986 * 150.00308 * 3 2 1 7 7 C 1.38809 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99645 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00508 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00156 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43520 * 303.91702 * 11 10 9 13 13 C 1.54894 * 110.48414 * 66.45347 * 11 10 9 14 14 C 1.54891 * 102.74668 * 156.75152 * 13 11 10 15 15 C 1.54264 * 104.31294 * 321.99642 * 14 13 11 16 16 H 1.09008 * 110.03172 * 264.38893 * 15 14 13 17 17 N 1.46498 * 110.03507 * 142.95962 * 15 14 13 18 18 C 1.34786 * 119.99962 * 86.45065 * 17 15 14 19 19 O 1.21545 * 119.99901 * 0.02562 * 18 17 15 20 20 C 1.47948 * 119.99837 * 180.02562 * 18 17 15 21 21 N 1.32198 * 120.15908 * 354.71092 * 20 18 17 22 22 C 1.32024 * 122.68197 * 179.97438 * 21 20 18 23 23 C 1.36690 * 122.02853 * 0.02562 * 22 21 20 24 24 C 1.40528 * 118.84613 * 0.02562 * 23 22 21 25 25 C 1.40326 * 122.22428 * 179.97438 * 24 23 22 26 26 C 1.36198 * 119.45395 * 179.97438 * 25 24 23 27 27 C 1.39380 * 121.00580 * 359.97438 * 26 25 24 28 28 C 1.36254 * 121.07942 * 0.02562 * 27 26 25 29 29 C 1.40094 * 119.53940 * 359.74414 * 28 27 26 30 30 C 1.54214 * 106.43157 * 23.63843 * 15 14 13 31 31 H 0.97005 * 120.00152 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99737 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46656 * 60.00603 * 10 9 7 34 34 H 1.08996 * 109.47002 * 300.00217 * 10 9 7 35 35 H 1.09001 * 110.75472 * 38.44037 * 13 11 10 36 36 H 1.08993 * 110.91531 * 275.13871 * 13 11 10 37 37 H 1.08995 * 110.48527 * 80.73479 * 14 13 11 38 38 H 1.08993 * 110.48536 * 203.24860 * 14 13 11 39 39 H 0.96997 * 120.00556 * 266.45276 * 17 15 14 40 40 H 1.08002 * 118.98853 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.57569 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.26557 * 0.02562 * 25 24 23 43 43 H 1.08011 * 119.49462 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.46033 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.23113 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.00941 * 240.69225 * 30 15 14 47 47 H 1.08999 * 110.06505 * 119.30823 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 1 5.8864 -1.5623 -0.8473 13 6 6.0434 -1.5213 1.3305 14 6 7.5513 -1.8643 1.4172 15 6 7.6469 -3.3042 0.8719 16 1 7.6317 -4.0173 1.6962 17 7 8.8761 -3.4647 0.0913 18 6 10.0277 -3.7965 0.7081 19 8 10.0462 -3.9629 1.9120 20 6 11.2692 -3.9580 -0.0802 21 7 11.2330 -3.8809 -1.3994 22 6 12.3097 -4.0168 -2.1513 23 6 13.5448 -4.2488 -1.6135 24 6 13.6690 -4.3457 -0.2171 25 6 14.9018 -4.5827 0.4098 26 6 14.9574 -4.6656 1.7681 27 6 13.8090 -4.5181 2.5441 28 6 12.5960 -4.2871 1.9682 29 6 12.5004 -4.1906 0.5739 30 6 6.4137 -3.5116 -0.0306 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 3.8484 -3.0434 -0.8882 34 1 3.8491 -3.0415 0.8918 35 1 5.5003 -1.9517 2.1718 36 1 5.8945 -0.4424 1.2878 37 1 8.1338 -1.1824 0.7977 38 1 7.8927 -1.8245 2.4515 39 1 8.8613 -3.3322 -0.8695 40 1 12.2115 -3.9432 -3.2243 41 1 14.4102 -4.3558 -2.2508 42 1 15.7993 -4.6976 -0.1800 43 1 15.9060 -4.8485 2.2514 44 1 13.8819 -4.5881 3.6194 45 1 11.7149 -4.1745 2.5827 46 1 5.8017 -4.3267 0.3557 47 1 6.7294 -3.7329 -1.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284209343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:26 Heat of formation + Delta-G solvation = 30.201625 kcal Electronic energy + Delta-G solvation = -27951.215961 eV Core-core repulsion = 24098.757831 eV Total energy + Delta-G solvation = -3852.458131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53709 -39.83908 -38.10673 -37.79369 -35.03786 -33.59829 -33.27045 -31.59905 -31.30842 -30.16748 -29.05421 -27.97847 -25.46219 -24.38564 -23.95256 -23.14581 -21.88660 -21.23018 -20.38714 -19.81217 -18.66008 -17.83691 -17.50835 -17.50144 -16.52972 -16.22796 -15.59349 -15.32772 -15.00414 -14.78027 -14.57209 -14.31271 -14.16135 -13.96541 -13.73824 -13.42201 -13.28942 -13.21727 -12.62657 -12.56421 -12.36261 -12.23353 -11.94481 -11.84553 -11.67093 -11.22698 -10.92166 -10.78109 -10.60697 -10.55346 -10.38763 -10.33176 -10.31732 -10.03427 -9.75802 -9.56495 -9.55687 -9.22603 -8.85705 -8.51096 -7.18576 -5.73686 -3.08470 -0.36743 0.44230 1.30674 2.29121 2.78721 2.86546 3.39487 3.42260 3.47328 3.68697 3.74289 4.11554 4.28508 4.33357 4.44102 4.59540 4.61977 4.67127 4.69049 4.77589 4.87861 4.97228 4.99852 5.26052 5.35532 5.40432 5.48162 5.53311 5.55054 5.59423 5.59760 5.65019 5.78672 5.83516 5.92636 5.94162 5.99388 6.04985 6.08975 6.19857 6.20832 6.39753 6.41721 6.48434 6.52960 6.72909 6.85625 7.13911 7.43021 7.93644 8.03368 8.45656 9.25416 9.97899 10.18262 11.44892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.001949 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.061732 B =14366.204821 C =14669.279432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.164 3.836 11 C -0.101 4.101 12 H 0.074 0.926 13 C -0.114 4.114 14 C -0.134 4.134 15 C 0.138 3.862 16 H 0.094 0.906 17 N -0.696 5.696 18 C 0.573 3.427 19 O -0.529 6.529 20 C 0.124 3.876 21 N -0.456 5.456 22 C 0.073 3.927 23 C -0.131 4.131 24 C -0.031 4.031 25 C -0.120 4.120 26 C -0.093 4.093 27 C -0.122 4.122 28 C -0.091 4.091 29 C -0.071 4.071 30 C -0.121 4.121 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.026 0.974 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.411 0.589 40 H 0.162 0.838 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.174 0.826 46 H 0.080 0.920 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.646 -10.819 -0.543 36.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.037 3.963 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.172 4.172 15 C 0.034 3.966 16 H 0.112 0.888 17 N -0.347 5.347 18 C 0.358 3.642 19 O -0.407 6.407 20 C -0.028 4.028 21 N -0.168 5.168 22 C -0.073 4.073 23 C -0.151 4.151 24 C -0.037 4.037 25 C -0.138 4.138 26 C -0.112 4.112 27 C -0.140 4.140 28 C -0.110 4.110 29 C -0.074 4.074 30 C -0.160 4.160 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.191 0.809 46 H 0.099 0.901 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 33.622 -10.877 -0.207 35.338 hybrid contribution 1.510 1.158 -0.283 1.924 sum 35.132 -9.719 -0.490 36.455 Atomic orbital electron populations 1.69704 1.05094 1.25745 1.57823 1.24674 0.95245 0.97194 1.02212 0.86543 0.79241 0.85005 0.77729 1.21157 1.21789 1.20284 1.19076 0.80747 0.94699 1.42663 0.89270 1.42695 1.03954 1.02306 1.91119 1.20670 0.87858 0.89232 0.98533 1.22199 0.96227 0.95527 0.98064 0.90715 1.22494 0.93728 1.01010 0.97915 1.22794 0.97728 0.95390 1.01320 1.21890 0.82361 0.98023 0.94300 0.88783 1.46134 1.07979 1.68286 1.12266 1.17751 0.82756 0.77143 0.86571 1.90590 1.84551 1.51792 1.13721 1.21399 0.93085 0.98307 0.90023 1.67260 1.33126 1.10769 1.05615 1.22203 0.87550 0.97342 1.00180 1.22171 0.99632 0.99019 0.94230 1.18215 0.93584 0.98401 0.93472 1.20939 0.96202 1.01501 0.95161 1.21104 0.98930 0.97230 0.93969 1.21153 0.92457 0.99739 1.00688 1.22205 1.00268 0.94773 0.93752 1.18698 0.92488 1.01117 0.95132 1.22472 0.95038 0.99018 0.99468 0.93124 0.80683 0.95605 0.95415 0.90747 0.91336 0.91480 0.91226 0.75224 0.82110 0.83919 0.84949 0.85448 0.85287 0.80935 0.90116 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.69 13.97 55.49 0.78 -28.92 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.32 27.74 -169.99 -4.71 17.61 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.76 -17.96 5.25 -59.91 -0.31 -18.28 16 10 C 0.16 3.11 5.55 -4.04 -0.02 3.09 16 11 C -0.10 -1.48 2.92 -88.96 -0.26 -1.74 16 12 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.11 -1.63 6.01 -24.73 -0.15 -1.78 16 14 C -0.13 -1.65 6.52 -25.07 -0.16 -1.81 16 15 C 0.14 1.60 3.24 -66.64 -0.22 1.38 16 16 H 0.09 1.15 7.61 -51.92 -0.40 0.76 16 17 N -0.70 -7.61 5.04 -53.45 -0.27 -7.88 16 18 C 0.57 6.98 7.77 -12.28 -0.10 6.89 16 19 O -0.53 -7.36 13.11 5.33 0.07 -7.29 16 20 C 0.12 1.39 6.81 -82.55 -0.56 0.83 16 21 N -0.46 -4.61 9.52 -9.81 -0.09 -4.71 16 22 C 0.07 0.56 11.06 -18.03 -0.20 0.36 16 23 C -0.13 -0.88 9.88 -39.28 -0.39 -1.27 16 24 C -0.03 -0.27 5.75 -106.82 -0.61 -0.89 16 25 C -0.12 -0.80 9.82 -39.53 -0.39 -1.18 16 26 C -0.09 -0.60 9.95 -39.89 -0.40 -0.99 16 27 C -0.12 -0.95 9.95 -39.87 -0.40 -1.35 16 28 C -0.09 -0.93 9.23 -39.60 -0.37 -1.29 16 29 C -0.07 -0.76 5.76 -106.59 -0.61 -1.38 16 30 C -0.12 -1.42 6.15 -25.43 -0.16 -1.57 16 31 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 32 H 0.36 8.37 5.38 -40.82 -0.22 8.15 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 4.03 7.67 -40.82 -0.31 3.72 16 40 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 43 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 44 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 45 H 0.17 1.97 4.96 -52.49 -0.26 1.71 16 46 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 47 H 0.07 0.74 7.62 -51.93 -0.40 0.35 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -33.92 382.19 -10.67 -44.59 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.64 Total: 8.93 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -5.24 Total: -9.81 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.10 Total: -59.79 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.07 Total: -7.29 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.92 -10.67 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284209343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.796 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds