Wall clock time and date at job start Sat Apr 11 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48509 * 109.47072 * 269.99886 * 3 2 1 5 5 H 1.48494 * 109.47229 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.46986 * 150.00308 * 3 2 1 7 7 C 1.38809 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99645 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00508 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00156 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43520 * 303.91702 * 11 10 9 13 13 C 1.54894 * 110.48414 * 66.45347 * 11 10 9 14 14 C 1.54891 * 102.74668 * 156.75152 * 13 11 10 15 15 C 1.54264 * 104.31294 * 321.99642 * 14 13 11 16 16 H 1.09008 * 110.03172 * 264.38893 * 15 14 13 17 17 N 1.46498 * 110.03507 * 142.95962 * 15 14 13 18 18 C 1.34786 * 119.99962 * 86.45065 * 17 15 14 19 19 O 1.21545 * 119.99901 * 0.02562 * 18 17 15 20 20 C 1.47948 * 119.99837 * 180.02562 * 18 17 15 21 21 N 1.32198 * 120.15908 * 354.71092 * 20 18 17 22 22 C 1.32024 * 122.68197 * 179.97438 * 21 20 18 23 23 C 1.36690 * 122.02853 * 0.02562 * 22 21 20 24 24 C 1.40528 * 118.84613 * 0.02562 * 23 22 21 25 25 C 1.40326 * 122.22428 * 179.97438 * 24 23 22 26 26 C 1.36198 * 119.45395 * 179.97438 * 25 24 23 27 27 C 1.39380 * 121.00580 * 359.97438 * 26 25 24 28 28 C 1.36254 * 121.07942 * 0.02562 * 27 26 25 29 29 C 1.40094 * 119.53940 * 359.74414 * 28 27 26 30 30 C 1.54214 * 106.43157 * 23.63843 * 15 14 13 31 31 H 0.97005 * 120.00152 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99737 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46656 * 60.00603 * 10 9 7 34 34 H 1.08996 * 109.47002 * 300.00217 * 10 9 7 35 35 H 1.09001 * 110.75472 * 38.44037 * 13 11 10 36 36 H 1.08993 * 110.91531 * 275.13871 * 13 11 10 37 37 H 1.08995 * 110.48527 * 80.73479 * 14 13 11 38 38 H 1.08993 * 110.48536 * 203.24860 * 14 13 11 39 39 H 0.96997 * 120.00556 * 266.45276 * 17 15 14 40 40 H 1.08002 * 118.98853 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.57569 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.26557 * 0.02562 * 25 24 23 43 43 H 1.08011 * 119.49462 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.46033 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.23113 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.00941 * 240.69225 * 30 15 14 47 47 H 1.08999 * 110.06505 * 119.30823 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 1 5.8864 -1.5623 -0.8473 13 6 6.0434 -1.5213 1.3305 14 6 7.5513 -1.8643 1.4172 15 6 7.6469 -3.3042 0.8719 16 1 7.6317 -4.0173 1.6962 17 7 8.8761 -3.4647 0.0913 18 6 10.0277 -3.7965 0.7081 19 8 10.0462 -3.9629 1.9120 20 6 11.2692 -3.9580 -0.0802 21 7 11.2330 -3.8809 -1.3994 22 6 12.3097 -4.0168 -2.1513 23 6 13.5448 -4.2488 -1.6135 24 6 13.6690 -4.3457 -0.2171 25 6 14.9018 -4.5827 0.4098 26 6 14.9574 -4.6656 1.7681 27 6 13.8090 -4.5181 2.5441 28 6 12.5960 -4.2871 1.9682 29 6 12.5004 -4.1906 0.5739 30 6 6.4137 -3.5116 -0.0306 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 3.8484 -3.0434 -0.8882 34 1 3.8491 -3.0415 0.8918 35 1 5.5003 -1.9517 2.1718 36 1 5.8945 -0.4424 1.2878 37 1 8.1338 -1.1824 0.7977 38 1 7.8927 -1.8245 2.4515 39 1 8.8613 -3.3322 -0.8695 40 1 12.2115 -3.9432 -3.2243 41 1 14.4102 -4.3558 -2.2508 42 1 15.7993 -4.6976 -0.1800 43 1 15.9060 -4.8485 2.2514 44 1 13.8819 -4.5881 3.6194 45 1 11.7149 -4.1745 2.5827 46 1 5.8017 -4.3267 0.3557 47 1 6.7294 -3.7329 -1.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284209343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:25 Heat of formation + Delta-G solvation = 8.657823 kcal Electronic energy + Delta-G solvation = -27952.150171 eV Core-core repulsion = 24098.757831 eV Total energy + Delta-G solvation = -3853.392340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19323 -40.72158 -39.19828 -38.37782 -36.62959 -34.85886 -33.99849 -33.23777 -32.17531 -30.86646 -30.35509 -29.08211 -26.52514 -25.65558 -24.52269 -23.83017 -23.69451 -22.05518 -21.40792 -21.11164 -19.55839 -19.34769 -18.44135 -18.13677 -17.45009 -16.83412 -16.66017 -16.42072 -16.14469 -16.11423 -15.57837 -15.39574 -14.98409 -14.85255 -14.78038 -14.68971 -14.44186 -14.27353 -13.88281 -13.73666 -13.51721 -13.16767 -12.95968 -12.86740 -12.74222 -12.51539 -12.32774 -12.15167 -11.98970 -11.78517 -11.71238 -11.62633 -11.48887 -11.20952 -11.08562 -10.94501 -10.50499 -10.18273 -10.12679 -9.27222 -9.08032 -8.02084 -5.34853 -0.99273 -0.13612 0.68402 1.37701 1.41255 1.48719 1.59543 1.96056 2.19490 2.48912 3.04734 3.07605 3.29139 3.46859 3.54232 3.60385 3.70099 3.80218 3.84636 3.89701 3.94367 4.18356 4.27125 4.37634 4.41553 4.46238 4.48007 4.49915 4.60517 4.64012 4.71152 4.72620 4.79899 4.86680 5.02953 5.05959 5.08428 5.10244 5.14281 5.22388 5.33202 5.39673 5.45766 5.51328 5.56647 5.64303 5.76847 5.89443 6.22209 6.34141 6.74117 7.08620 7.09362 7.86395 8.05846 9.19576 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.001949 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.061732 B =14366.204821 C =14669.279432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.234 4.234 8 H 0.055 0.945 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.092 4.092 12 H 0.081 0.919 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.145 3.855 16 H 0.086 0.914 17 N -0.690 5.690 18 C 0.569 3.431 19 O -0.556 6.556 20 C 0.090 3.910 21 N -0.463 5.463 22 C 0.054 3.946 23 C -0.108 4.108 24 C -0.054 4.054 25 C -0.111 4.111 26 C -0.100 4.100 27 C -0.115 4.115 28 C -0.128 4.128 29 C -0.087 4.087 30 C -0.111 4.111 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.417 0.583 40 H 0.191 0.809 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.083 0.917 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.178 -10.757 -1.883 40.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.175 1.175 7 C -0.365 4.365 8 H 0.073 0.927 9 N -0.402 5.402 10 C 0.034 3.966 11 C -0.111 4.111 12 H 0.099 0.901 13 C -0.151 4.151 14 C -0.162 4.162 15 C 0.041 3.959 16 H 0.104 0.896 17 N -0.340 5.340 18 C 0.356 3.644 19 O -0.435 6.435 20 C -0.061 4.061 21 N -0.175 5.175 22 C -0.093 4.093 23 C -0.128 4.128 24 C -0.059 4.059 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.133 4.133 28 C -0.147 4.147 29 C -0.091 4.091 30 C -0.149 4.149 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.208 0.792 41 H 0.201 0.799 42 H 0.185 0.815 43 H 0.177 0.823 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.102 0.898 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 38.196 -10.844 -1.551 39.736 hybrid contribution 0.192 1.001 0.112 1.026 sum 38.388 -9.843 -1.439 39.656 Atomic orbital electron populations 1.69891 1.07152 1.26649 1.59864 1.25532 0.96162 1.01342 1.02761 0.85397 0.78698 0.79487 0.78158 1.20322 1.22311 1.17505 1.19065 0.82907 0.93437 1.41091 0.92679 1.42700 1.02341 1.04317 1.90882 1.20852 0.90363 0.87234 0.98115 1.22081 0.93252 0.97287 0.98461 0.90086 1.22451 0.94955 1.00326 0.97394 1.22685 0.96252 0.95886 1.01388 1.21715 0.82715 0.97335 0.94167 0.89574 1.46033 1.07464 1.68108 1.12443 1.18038 0.83392 0.76574 0.86447 1.90581 1.85083 1.52944 1.14873 1.21200 0.92845 1.01442 0.90594 1.67208 1.34608 1.10480 1.05201 1.22779 0.87459 0.97647 1.01374 1.22632 1.00596 0.95774 0.93776 1.18593 0.93705 0.99180 0.94447 1.21391 0.96477 0.99356 0.95591 1.21470 0.99525 0.96768 0.94168 1.21447 0.92200 0.97832 1.01826 1.22074 1.00688 0.97976 0.93938 1.18898 0.93230 1.01389 0.95535 1.22376 0.94504 0.97388 1.00666 0.93382 0.80075 0.95639 0.95826 0.91678 0.92171 0.91023 0.91500 0.74468 0.79204 0.79942 0.81467 0.82264 0.83760 0.83156 0.89816 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 46.10 27.74 68.60 1.90 48.01 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.25 -10.87 6.52 99.48 0.65 -10.23 16 7 C -0.23 -13.62 10.47 84.03 0.88 -12.74 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.76 -35.67 5.25 -343.44 -1.80 -37.48 16 10 C 0.16 6.01 5.55 86.38 0.48 6.49 16 11 C -0.09 -2.57 2.92 -9.72 -0.03 -2.60 16 12 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.11 -3.15 6.01 31.89 0.19 -2.96 16 14 C -0.12 -2.97 6.52 31.67 0.21 -2.76 16 15 C 0.14 3.29 3.24 45.83 0.15 3.44 16 16 H 0.09 2.13 7.61 -2.38 -0.02 2.12 16 17 N -0.69 -14.91 5.04 -441.31 -2.23 -17.13 16 18 C 0.57 14.34 7.77 86.82 0.67 15.02 16 19 O -0.56 -16.41 13.11 -3.86 -0.05 -16.46 16 20 C 0.09 2.04 6.81 42.43 0.29 2.33 16 21 N -0.46 -8.94 9.52 -184.95 -1.76 -10.70 16 22 C 0.05 0.69 11.06 84.30 0.93 1.62 16 23 C -0.11 -1.10 9.88 22.47 0.22 -0.88 16 24 C -0.05 -0.81 5.75 -21.29 -0.12 -0.93 16 25 C -0.11 -1.08 9.82 22.30 0.22 -0.86 16 26 C -0.10 -1.00 9.95 22.07 0.22 -0.78 16 27 C -0.12 -1.69 9.95 22.08 0.22 -1.47 16 28 C -0.13 -2.71 9.23 22.26 0.21 -2.50 16 29 C -0.09 -1.86 5.76 -21.14 -0.12 -1.99 16 30 C -0.11 -2.44 6.15 31.43 0.19 -2.25 16 31 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 32 H 0.37 16.41 5.38 -92.71 -0.50 15.91 16 33 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.06 1.93 8.02 -2.39 -0.02 1.91 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.42 7.82 7.67 -92.71 -0.71 7.11 16 40 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 43 H 0.16 0.53 8.06 -2.90 -0.02 0.51 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.15 3.79 4.96 -3.02 -0.01 3.78 16 46 H 0.08 1.83 7.84 -2.38 -0.02 1.81 16 47 H 0.09 1.68 7.62 -2.39 -0.02 1.66 16 Total: -1.00 -76.82 382.19 1.38 -75.44 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.26 Total: 29.55 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.28 Total: -7.36 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.49 Total: -129.17 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.01 kcal Total: -76.82 1.38 -75.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284209343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.101 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds