Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46943 * 239.99902 * 3 2 1 5 5 H 1.48499 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47168 * 119.99803 * 3 2 1 7 7 C 1.38809 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00121 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99814 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46866 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.54016 * 307.60959 * 11 10 9 13 13 C 1.54891 * 110.48809 * 70.22366 * 11 10 9 14 14 C 1.54888 * 102.75120 * 156.61818 * 13 11 10 15 15 C 1.54261 * 104.19672 * 322.06034 * 14 13 11 16 16 H 1.08997 * 110.07267 * 264.30456 * 15 14 13 17 17 N 1.46501 * 110.03258 * 142.89234 * 15 14 13 18 18 C 1.34776 * 119.99784 * 87.83749 * 17 15 14 19 19 O 1.21560 * 120.00274 * 359.97438 * 18 17 15 20 20 C 1.47759 * 119.99619 * 180.02562 * 18 17 15 21 21 C 1.40595 * 120.27212 * 359.71584 * 20 18 17 22 22 N 1.30802 * 121.54013 * 179.71997 * 21 20 18 23 23 C 1.33820 * 121.71651 * 0.58846 * 22 21 20 24 24 C 1.40526 * 120.82361 * 179.70082 * 23 22 21 25 25 C 1.36126 * 119.82023 * 179.97438 * 24 23 22 26 26 C 1.39349 * 121.08897 * 0.02562 * 25 24 23 27 27 C 1.36143 * 120.82882 * 359.97438 * 26 25 24 28 28 C 1.40539 * 119.62217 * 0.04122 * 27 26 25 29 29 C 1.39014 * 120.26685 * 179.97438 * 20 18 17 30 30 C 1.53876 * 106.59990 * 23.60631 * 15 14 13 31 31 H 0.96993 * 120.00559 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99729 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47735 * 59.99804 * 10 9 7 34 34 H 1.08993 * 109.47293 * 299.99515 * 10 9 7 35 35 H 1.09005 * 110.75269 * 38.30322 * 13 11 10 36 36 H 1.09004 * 110.91555 * 275.01137 * 13 11 10 37 37 H 1.09000 * 110.48622 * 203.37816 * 14 13 11 38 38 H 1.08999 * 110.48451 * 80.73628 * 14 13 11 39 39 H 0.97000 * 120.00219 * 267.83129 * 17 15 14 40 40 H 1.08002 * 119.22980 * 0.02562 * 21 20 18 41 41 H 1.08005 * 120.08489 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.45802 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.58068 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.18912 * 180.02562 * 27 26 25 45 45 H 1.08007 * 121.01548 * 359.97438 * 29 20 18 46 46 H 1.08995 * 110.03160 * 119.28453 * 30 15 14 47 47 H 1.08998 * 110.03319 * 240.71542 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0641 -4.8197 0.0021 12 1 0.3418 -4.7050 0.8103 13 6 0.3392 -4.9137 -1.3635 14 6 -0.1113 -6.3949 -1.4102 15 6 1.0601 -7.1669 -0.7688 16 1 1.7278 -7.5446 -1.5431 17 7 0.5475 -8.2779 0.0370 18 6 0.3202 -9.4767 -0.5354 19 8 0.5401 -9.6361 -1.7203 20 6 -0.1973 -10.5971 0.2772 21 6 -0.4490 -10.4205 1.6492 22 7 -0.9122 -11.3934 2.3906 23 6 -1.1587 -12.6075 1.8846 24 6 -1.6504 -13.6411 2.6998 25 6 -1.8946 -14.8682 2.1635 26 6 -1.6645 -15.1219 0.8128 27 6 -1.1886 -14.1465 -0.0091 28 6 -0.9249 -12.8676 0.5106 29 6 -0.4343 -11.8358 -0.3075 30 6 1.8075 -6.1654 0.1291 31 1 -0.4850 0.8399 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.6843 -3.7141 0.8921 34 1 2.6856 -3.7148 -0.8878 35 1 1.0254 -4.6926 -2.1811 36 1 -0.5224 -4.2467 -1.3934 37 1 -0.2608 -6.7158 -2.4411 38 1 -1.0234 -6.5346 -0.8300 39 1 0.3718 -8.1507 0.9824 40 1 -0.2600 -9.4576 2.1004 41 1 -1.8349 -13.4621 3.7488 42 1 -2.2720 -15.6585 2.7955 43 1 -1.8663 -16.1047 0.4130 44 1 -1.0144 -14.3544 -1.0545 45 1 -0.2462 -12.0004 -1.3582 46 1 1.7888 -6.5060 1.1643 47 1 2.8376 -6.0565 -0.2100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284217204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = 19.575236 kcal Electronic energy + Delta-G solvation = -27412.267249 eV Core-core repulsion = 23559.348324 eV Total energy + Delta-G solvation = -3852.918925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41054 -40.00099 -38.15092 -37.30209 -34.91411 -33.89328 -33.51552 -31.47282 -30.79735 -30.52419 -28.79706 -27.79398 -25.15479 -24.53417 -24.17528 -22.57355 -22.16589 -21.49487 -20.41149 -19.68260 -18.73500 -18.25963 -17.54054 -17.01673 -16.43538 -16.07406 -15.41037 -15.10818 -14.90370 -14.83878 -14.61859 -14.38427 -14.22593 -13.94970 -13.81153 -13.50921 -13.39664 -13.02700 -12.79091 -12.29015 -12.27748 -12.20451 -11.98127 -11.85630 -11.32516 -11.09072 -10.98550 -10.82994 -10.72654 -10.57112 -10.47399 -10.29606 -10.22803 -9.95871 -9.82856 -9.65056 -9.36690 -9.14878 -8.83707 -8.77739 -6.88472 -5.73983 -3.02151 -0.23609 0.13845 1.39894 2.13000 2.86355 2.91004 3.45746 3.49995 3.51085 3.64680 3.70471 4.07585 4.21958 4.29294 4.32202 4.50053 4.59070 4.61631 4.67708 4.77463 4.79268 4.91488 5.03486 5.26284 5.37813 5.38689 5.51448 5.53539 5.54786 5.60665 5.63936 5.66124 5.80003 5.87805 5.88315 5.89968 5.96996 6.08632 6.13633 6.26624 6.27944 6.31141 6.48160 6.56445 6.60728 6.82019 6.95291 7.24863 7.36967 7.71867 7.93758 8.45327 9.56315 10.15382 10.49937 11.48906 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032180 B = 0.001664 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.902249 B =16827.660337 C =17256.105254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.097 4.097 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.141 3.859 16 H 0.092 0.908 17 N -0.715 5.715 18 C 0.563 3.437 19 O -0.535 6.535 20 C -0.193 4.193 21 C 0.162 3.838 22 N -0.474 5.474 23 C 0.141 3.859 24 C -0.098 4.098 25 C -0.091 4.091 26 C -0.120 4.120 27 C -0.086 4.086 28 C -0.113 4.113 29 C 0.013 3.987 30 C -0.123 4.123 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.163 0.837 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.154 0.846 46 H 0.068 0.932 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 -32.767 2.834 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.111 0.889 17 N -0.366 5.366 18 C 0.349 3.651 19 O -0.413 6.413 20 C -0.198 4.198 21 C -0.012 4.012 22 N -0.181 5.181 23 C 0.020 3.980 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.138 4.138 27 C -0.104 4.104 28 C -0.115 4.115 29 C -0.014 4.014 30 C -0.162 4.162 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.180 0.820 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.172 0.828 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.462 -32.697 2.901 33.008 hybrid contribution 0.212 0.950 -0.358 1.037 sum -3.251 -31.748 2.543 32.015 Atomic orbital electron populations 1.69646 1.05087 1.25702 1.57865 1.24729 0.95514 0.97645 1.03130 0.86271 0.78513 0.83604 0.77822 1.21307 1.21714 1.21320 1.19199 0.91005 0.84284 1.42580 0.91304 1.42334 1.05853 0.99933 1.89433 1.20695 0.93073 0.85349 0.97661 1.22154 0.97835 0.93681 0.97895 0.90607 1.22471 1.00659 0.94350 0.97402 1.22799 0.97613 0.95986 1.00846 1.21794 0.95692 0.85329 0.93488 0.88948 1.46188 1.66416 1.10716 1.13274 1.17965 0.77773 0.82325 0.86997 1.90789 1.51967 1.83218 1.15297 1.21005 1.07060 0.95897 0.95861 1.23072 0.91039 0.97875 0.89196 1.67967 1.12404 0.99704 1.38076 1.19038 0.96331 0.91964 0.90627 1.20863 0.98976 0.91558 1.00282 1.21021 0.97798 0.96868 0.95430 1.20982 0.99319 0.99728 0.93792 1.21096 0.97554 0.91431 1.00355 1.18847 1.02760 0.95475 0.94445 1.21990 0.88876 0.90098 1.00409 1.22446 0.99982 0.94581 0.99150 0.93518 0.78274 0.96551 0.96249 0.91153 0.90843 0.91420 0.91423 0.76501 0.82031 0.84365 0.84979 0.85154 0.84765 0.82848 0.91299 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.39 5.49 -59.92 -0.33 -18.72 16 10 C 0.16 3.14 5.54 -4.04 -0.02 3.11 16 11 C -0.10 -1.47 2.89 -88.96 -0.26 -1.72 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.66 6.19 -24.74 -0.15 -1.81 16 14 C -0.13 -1.70 6.53 -25.08 -0.16 -1.86 16 15 C 0.14 1.63 3.25 -66.81 -0.22 1.41 16 16 H 0.09 1.18 7.56 -51.93 -0.39 0.78 16 17 N -0.71 -7.08 4.99 -53.69 -0.27 -7.35 16 18 C 0.56 6.45 7.77 -12.37 -0.10 6.36 16 19 O -0.54 -7.89 16.04 5.31 0.09 -7.80 16 20 C -0.19 -1.89 5.89 -104.83 -0.62 -2.51 16 21 C 0.16 1.45 10.68 -17.10 -0.18 1.27 16 22 N -0.47 -4.87 10.30 -10.67 -0.11 -4.98 16 23 C 0.14 1.35 6.61 -84.79 -0.56 0.79 16 24 C -0.10 -0.73 9.97 -39.48 -0.39 -1.12 16 25 C -0.09 -0.49 9.94 -39.93 -0.40 -0.89 16 26 C -0.12 -0.63 9.96 -39.92 -0.40 -1.02 16 27 C -0.09 -0.55 9.77 -39.47 -0.39 -0.93 16 28 C -0.11 -0.99 5.74 -106.82 -0.61 -1.60 16 29 C 0.01 0.12 9.46 -38.43 -0.36 -0.25 16 30 C -0.12 -1.44 6.14 -25.61 -0.16 -1.60 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.38 10.11 7.64 -40.82 -0.31 9.80 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 35 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 39 H 0.40 2.95 6.35 -40.82 -0.26 2.70 16 40 H 0.16 1.00 6.37 -52.49 -0.33 0.66 16 41 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 43 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.15 1.27 7.70 -52.48 -0.40 0.87 16 46 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 47 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -34.26 388.62 -10.97 -45.23 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.68 Total: 7.63 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -5.22 Total: -9.77 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.02 Total: -58.62 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.26 -10.97 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284217204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.805 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds