Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48503 * 109.47307 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47052 * 30.00533 * 3 2 1 6 6 H 1.48509 * 109.46934 * 150.00350 * 3 2 1 7 7 C 1.38815 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00249 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.90304 * 23.74589 * 10 9 7 12 12 C 1.53778 * 113.61905 * 154.99951 * 10 9 7 13 13 C 1.53782 * 87.08314 * 139.97805 * 12 10 9 14 14 H 1.09004 * 113.60677 * 89.19892 * 13 12 10 15 15 C 1.52997 * 113.61432 * 220.02045 * 13 12 10 16 16 N 1.46499 * 109.46667 * 183.47426 * 15 13 12 17 17 C 1.34779 * 119.99778 * 179.97438 * 16 15 13 18 18 O 1.21286 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00033 * 179.97438 * 17 16 15 20 20 C 1.50695 * 109.47101 * 179.97438 * 19 17 16 21 21 C 1.36258 * 120.26400 * 265.00436 * 20 19 17 22 22 C 1.39337 * 121.01915 * 180.29822 * 21 20 19 23 23 C 1.36203 * 121.08467 * 359.42946 * 22 21 20 24 24 C 1.40335 * 119.51690 * 0.55989 * 23 22 21 25 25 C 1.40443 * 122.08443 * 179.72685 * 24 23 22 26 26 N 1.31244 * 119.87520 * 180.02562 * 25 24 23 27 27 C 1.32604 * 122.78768 * 359.97438 * 26 25 24 28 28 C 1.36175 * 121.88349 * 359.97438 * 27 26 25 29 29 C 1.40195 * 120.25926 * 85.02427 * 20 19 17 30 30 C 1.53782 * 87.17102 * 334.61361 * 13 12 10 31 31 H 0.97003 * 119.99383 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99908 * 359.97438 * 9 7 2 33 33 H 1.09010 * 113.60843 * 25.43051 * 12 10 9 34 34 H 1.09001 * 113.69345 * 254.54493 * 12 10 9 35 35 H 1.08997 * 109.47051 * 63.47434 * 15 13 12 36 36 H 1.08996 * 109.47104 * 303.46904 * 15 13 12 37 37 H 0.96998 * 120.00892 * 359.97438 * 16 15 13 38 38 H 1.09005 * 109.46805 * 60.00348 * 19 17 16 39 39 H 1.08996 * 109.47027 * 299.99873 * 19 17 16 40 40 H 1.08002 * 119.48562 * 0.02562 * 21 20 19 41 41 H 1.07993 * 119.45337 * 179.69623 * 22 21 20 42 42 H 1.08001 * 120.24047 * 180.27988 * 23 22 21 43 43 H 1.07996 * 120.06052 * 0.04195 * 25 24 23 44 44 H 1.08000 * 119.05819 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.66578 * 180.02562 * 28 27 26 46 46 H 1.09002 * 113.61372 * 139.94390 * 30 13 12 47 47 H 1.09007 * 113.61224 * 270.83581 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0660 -3.5647 0.4038 12 6 1.2601 -4.8288 0.5949 13 6 1.8478 -5.6976 -0.5297 14 1 2.7977 -6.1646 -0.2694 15 6 0.8446 -6.6851 -1.1291 16 7 1.5177 -7.5188 -2.1282 17 6 0.8261 -8.4669 -2.7911 18 8 -0.3533 -8.6302 -2.5601 19 6 1.5183 -9.3241 -3.8193 20 6 0.5306 -10.2977 -4.4087 21 6 0.4256 -11.5592 -3.9047 22 6 -0.4779 -12.4741 -4.4417 23 6 -1.2919 -12.1325 -5.4789 24 6 -1.2122 -10.8419 -6.0243 25 6 -2.0214 -10.4343 -7.0974 26 7 -1.9104 -9.2166 -7.5741 27 6 -1.0551 -8.3291 -7.0850 28 6 -0.2275 -8.6253 -6.0450 29 6 -0.2873 -9.9126 -5.4803 30 6 2.0010 -4.4033 -1.3458 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 0.0002 33 1 0.1797 -4.7001 0.5280 34 1 1.5904 -5.1222 1.5914 35 1 0.0319 -6.1347 -1.6030 36 1 0.4421 -7.3188 -0.3389 37 1 2.4610 -7.3885 -2.3128 38 1 2.3316 -9.8741 -3.3457 39 1 1.9201 -8.6902 -4.6097 40 1 1.0555 -11.8560 -3.0792 41 1 -0.5366 -13.4690 -4.0257 42 1 -1.9904 -12.8511 -5.8816 43 1 -2.7338 -11.1216 -7.5293 44 1 -1.0143 -7.3430 -7.5235 45 1 0.4614 -7.8871 -5.6618 46 1 2.9298 -4.3528 -1.9141 47 1 1.1235 -4.1581 -1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316618205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = 42.838678 kcal Electronic energy + Delta-G solvation = -27601.842287 eV Core-core repulsion = 23749.932140 eV Total energy + Delta-G solvation = -3851.910147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27362 -39.80642 -38.52836 -37.61259 -34.74803 -34.15710 -33.30858 -31.64785 -30.93097 -30.27899 -28.58225 -26.67612 -25.12624 -24.46519 -23.89439 -23.83819 -21.90821 -21.06584 -20.41706 -19.08325 -18.32688 -17.46554 -17.22679 -17.04623 -16.98547 -16.11288 -15.64205 -15.11138 -14.88613 -14.73340 -14.68892 -14.46969 -14.08546 -13.84995 -13.69003 -13.52168 -13.44051 -13.03148 -12.87607 -12.41543 -12.26724 -11.98868 -11.92031 -11.83920 -11.42913 -11.32730 -11.25463 -10.85625 -10.56265 -10.43858 -10.28583 -10.16086 -9.89762 -9.86154 -9.73666 -9.51733 -9.32821 -9.08193 -8.89043 -8.30056 -6.98774 -5.80349 -3.09433 0.06462 0.64755 1.61145 2.50665 2.71904 3.14952 3.41074 3.46069 3.48057 3.82669 4.03995 4.19439 4.33310 4.45889 4.56210 4.57542 4.65970 4.72004 4.79803 4.91457 4.94197 4.99317 5.01241 5.08528 5.19594 5.35034 5.44114 5.46909 5.48722 5.49114 5.70679 5.75349 5.78565 5.81828 5.90078 6.05031 6.06256 6.16003 6.21768 6.27906 6.32304 6.35194 6.40955 6.52887 6.55402 6.79209 7.07932 7.39046 7.66754 7.72859 8.11248 8.38115 9.49115 10.07317 10.41332 11.41950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.001934 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.520888 B =14474.522325 C =15551.086306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.132 3.868 16 N -0.725 5.725 17 C 0.509 3.491 18 O -0.531 6.531 19 C -0.106 4.106 20 C -0.056 4.056 21 C -0.088 4.088 22 C -0.116 4.116 23 C -0.088 4.088 24 C -0.112 4.112 25 C 0.144 3.856 26 N -0.489 5.489 27 C 0.077 3.923 28 C -0.150 4.150 29 C -0.007 4.007 30 C -0.161 4.161 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.400 0.600 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.135 0.865 46 H 0.053 0.947 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -28.000 -10.981 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.377 5.377 17 C 0.295 3.705 18 O -0.407 6.407 19 C -0.146 4.146 20 C -0.056 4.056 21 C -0.107 4.107 22 C -0.135 4.135 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.028 4.028 26 N -0.197 5.197 27 C -0.066 4.066 28 C -0.170 4.170 29 C -0.012 4.012 30 C -0.202 4.202 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.152 0.848 46 H 0.072 0.928 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.153 -27.490 -11.471 29.865 hybrid contribution 1.139 0.787 0.680 1.543 sum 3.292 -26.703 -10.791 28.989 Atomic orbital electron populations 1.69664 1.05143 1.25776 1.57364 1.24783 0.95537 0.97828 1.02813 0.86186 0.78644 0.83790 0.77528 1.21687 1.21747 1.20736 1.19296 0.91052 0.84235 1.43022 0.91097 1.42416 1.05773 0.99887 1.86966 1.21540 0.95292 0.85046 0.92719 0.90691 1.23448 1.01058 0.97035 0.96695 1.22638 0.98345 0.94405 0.99231 0.89396 1.21434 0.95437 0.91977 0.90228 1.46055 1.13819 1.36312 1.41507 1.20423 0.87425 0.80681 0.82006 1.90754 1.15630 1.68863 1.65499 1.20706 0.97935 0.97436 0.98550 1.19017 0.96930 0.94416 0.95237 1.20831 0.98204 0.92938 0.98711 1.20867 0.96044 0.99825 0.96716 1.20968 0.98776 0.94733 0.96335 1.19000 0.98468 0.95284 0.98659 1.23197 0.95445 0.92716 0.91427 1.67418 1.19731 1.02821 1.29700 1.22191 0.91709 0.98707 0.93971 1.21901 1.01327 0.96103 0.97665 1.17932 0.94879 0.93603 0.94792 1.23977 1.01296 0.94976 0.99979 0.93422 0.78060 0.90137 0.91995 0.91264 0.91831 0.76577 0.87524 0.87660 0.85628 0.85456 0.84938 0.82041 0.82916 0.84769 0.92776 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.62 5.40 -52.55 -0.28 -17.90 16 10 C 0.17 3.14 4.48 -67.03 -0.30 2.84 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.14 -2.22 7.40 -25.92 -0.19 -2.41 16 13 C -0.13 -1.61 3.75 -89.81 -0.34 -1.95 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.66 5.50 -4.04 -0.02 1.64 16 16 N -0.73 -7.35 5.56 -60.30 -0.33 -7.68 16 17 C 0.51 5.80 7.82 -10.98 -0.09 5.72 16 18 O -0.53 -8.56 16.03 5.55 0.09 -8.47 16 19 C -0.11 -0.82 5.28 -29.04 -0.15 -0.98 16 20 C -0.06 -0.54 4.38 -104.60 -0.46 -1.00 16 21 C -0.09 -0.73 9.58 -39.89 -0.38 -1.12 16 22 C -0.12 -0.87 9.94 -39.90 -0.40 -1.27 16 23 C -0.09 -0.69 9.81 -39.53 -0.39 -1.08 16 24 C -0.11 -1.13 5.74 -106.86 -0.61 -1.74 16 25 C 0.14 1.40 11.05 -16.97 -0.19 1.21 16 26 N -0.49 -5.70 10.30 -13.15 -0.14 -5.83 16 27 C 0.08 0.84 11.07 -17.96 -0.20 0.64 16 28 C -0.15 -1.61 9.36 -39.39 -0.37 -1.98 16 29 C -0.01 -0.08 5.75 -106.81 -0.61 -0.69 16 30 C -0.16 -2.56 7.45 -25.83 -0.19 -2.75 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 10.20 7.92 -40.82 -0.32 9.87 16 33 H 0.08 1.33 8.08 -51.92 -0.42 0.91 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.02 7.87 -51.93 -0.41 0.62 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 2.92 8.47 -40.82 -0.35 2.57 16 38 H 0.11 0.52 8.04 -51.93 -0.42 0.10 16 39 H 0.11 0.63 6.79 -51.93 -0.35 0.28 16 40 H 0.13 0.79 8.05 -52.49 -0.42 0.36 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.13 1.23 6.65 -52.49 -0.35 0.88 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -35.29 393.87 -10.96 -46.26 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.80 Total: 10.14 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -5.13 Total: -12.25 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.03 Total: -58.80 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.29 -10.96 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316618205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.094 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds