Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00272 * 2 1 4 4 H 1.48497 * 109.47018 * 240.00136 * 3 2 1 5 5 H 1.48502 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47696 * 119.99432 * 3 2 1 7 7 C 1.38817 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99480 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46790 * 175.28856 * 10 9 7 12 12 H 1.08999 * 109.58799 * 309.13793 * 11 10 9 13 13 C 1.53188 * 109.58880 * 188.70896 * 11 10 9 14 14 C 1.53037 * 109.31587 * 185.57992 * 13 11 10 15 15 C 1.53044 * 109.53786 * 61.36666 * 14 13 11 16 16 C 1.53628 * 109.23762 * 298.51139 * 15 14 13 17 17 N 1.46928 * 109.58217 * 69.42162 * 11 10 9 18 18 C 1.34772 * 120.63640 * 353.37193 * 17 11 10 19 19 O 1.21555 * 119.99429 * 6.43436 * 18 17 11 20 20 C 1.47884 * 120.00411 * 186.43869 * 18 17 11 21 21 C 1.40597 * 119.73059 * 37.71127 * 20 18 17 22 22 C 1.35850 * 120.95660 * 180.02562 * 21 20 18 23 23 C 1.40499 * 119.87621 * 359.97438 * 22 21 20 24 24 C 1.40482 * 121.84278 * 179.97438 * 23 22 21 25 25 N 1.31216 * 119.94114 * 180.02562 * 24 23 22 26 26 C 1.32553 * 122.80148 * 359.97438 * 25 24 23 27 27 C 1.36224 * 121.85170 * 0.02562 * 26 25 24 28 28 C 1.40768 * 118.66917 * 359.97438 * 27 26 25 29 29 C 1.38524 * 119.72977 * 217.69031 * 20 18 17 30 30 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00444 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47198 * 55.29797 * 10 9 7 33 33 H 1.08998 * 109.47632 * 295.29184 * 10 9 7 34 34 H 1.09008 * 109.49804 * 305.53521 * 13 11 10 35 35 H 1.09007 * 109.49510 * 65.62432 * 13 11 10 36 36 H 1.08998 * 109.45777 * 181.38876 * 14 13 11 37 37 H 1.09003 * 109.45897 * 301.34389 * 14 13 11 38 38 H 1.09002 * 109.49827 * 58.58282 * 15 14 13 39 39 H 1.08992 * 109.49749 * 178.65206 * 15 14 13 40 40 H 1.08997 * 109.73953 * 295.11623 * 16 15 14 41 41 H 1.09000 * 109.66416 * 174.54846 * 16 15 14 42 42 H 1.08002 * 119.52083 * 359.97438 * 21 20 18 43 43 H 1.07999 * 120.05957 * 179.97438 * 22 21 20 44 44 H 1.08004 * 120.02912 * 359.75049 * 24 23 22 45 45 H 1.08007 * 119.07349 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.66506 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.36705 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0680 -4.8173 0.1190 12 1 0.3961 -4.6402 0.9589 13 6 1.8341 -6.1257 0.3375 14 6 0.8504 -7.2979 0.3160 15 6 0.1622 -7.3635 -1.0494 16 6 -0.6271 -6.0660 -1.2812 17 7 0.2878 -4.9276 -1.1211 18 6 0.4049 -3.9991 -2.0910 19 8 1.2442 -3.1249 -1.9972 20 6 -0.4878 -4.0439 -3.2692 21 6 -1.8343 -4.4159 -3.1101 22 6 -2.6760 -4.4658 -4.1752 23 6 -2.2020 -4.1420 -5.4576 24 6 -3.0359 -4.1803 -6.5875 25 7 -2.5538 -3.8709 -7.7680 26 6 -1.2911 -3.5148 -7.9572 27 6 -0.4016 -3.4463 -6.9278 28 6 -0.8448 -3.7640 -5.6300 29 6 0.0094 -3.7185 -4.5205 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.7464 -3.6789 0.8454 33 1 2.6200 -3.7520 -0.9286 34 1 2.5698 -6.2535 -0.4566 35 1 2.3410 -6.0938 1.3020 36 1 1.3898 -8.2279 0.4959 37 1 0.1005 -7.1570 1.0944 38 1 0.9136 -7.4796 -1.8304 39 1 -0.5205 -8.2128 -1.0722 40 1 -1.4346 -5.9912 -0.5528 41 1 -1.0406 -6.0635 -2.2897 42 1 -2.2046 -4.6664 -2.1269 43 1 -3.7076 -4.7539 -4.0364 44 1 -4.0718 -4.4685 -6.4852 45 1 -0.9580 -3.2728 -8.9557 46 1 0.6229 -3.1534 -7.1037 47 1 1.0442 -3.4332 -4.6396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317194131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = 77.697415 kcal Electronic energy + Delta-G solvation = -29983.217066 eV Core-core repulsion = 26132.818507 eV Total energy + Delta-G solvation = -3850.398559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98737 -40.04081 -37.43679 -36.70547 -34.45114 -33.13692 -32.72184 -32.06320 -30.81392 -29.88979 -29.59406 -26.35368 -24.86090 -24.43388 -23.64226 -22.77223 -22.32389 -21.40679 -20.65222 -19.36842 -18.12338 -17.28432 -16.77675 -16.57050 -15.92692 -15.51296 -14.99869 -14.92138 -14.58169 -14.50383 -14.22653 -14.15989 -13.93982 -13.63746 -13.45783 -13.36421 -13.02692 -12.77355 -12.72127 -12.31707 -12.19333 -12.10454 -11.97931 -11.64843 -11.14266 -11.05769 -10.90194 -10.76031 -10.70210 -10.58558 -10.35087 -10.22044 -9.92148 -9.60522 -9.54159 -9.00932 -8.78463 -8.39299 -8.12118 -8.08400 -6.56358 -5.59609 -2.77524 0.25752 0.73807 1.85793 2.75017 3.31446 3.51751 3.57250 3.58517 3.59408 4.06348 4.31388 4.49454 4.60839 4.71638 4.73144 4.78329 4.78904 4.88623 4.94564 5.07500 5.14727 5.18380 5.21302 5.38985 5.47272 5.52484 5.59504 5.64761 5.69558 5.76248 5.77735 5.82258 5.93547 5.94302 5.99265 6.02220 6.06851 6.11761 6.26923 6.33603 6.38136 6.50866 6.55774 6.63372 6.74785 6.91614 7.26012 7.83639 7.87750 7.89131 8.58594 8.84688 9.69670 10.28910 10.63103 11.63993 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004527 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.380259 B = 6183.893181 C = 8699.784067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.020 4.020 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.209 4.209 8 H 0.066 0.934 9 N -0.695 5.695 10 C 0.157 3.843 11 C 0.144 3.856 12 H 0.069 0.931 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.510 3.490 19 O -0.433 6.433 20 C -0.084 4.084 21 C -0.093 4.093 22 C -0.099 4.099 23 C -0.104 4.104 24 C 0.141 3.859 25 N -0.491 5.491 26 C 0.067 3.933 27 C -0.146 4.146 28 C -0.027 4.027 29 C -0.063 4.063 30 H 0.251 0.749 31 H 0.379 0.621 32 H 0.016 0.984 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.138 0.862 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -18.028 -8.221 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.215 4.215 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.337 5.337 10 C 0.030 3.970 11 C 0.040 3.960 12 H 0.087 0.913 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.023 4.023 17 N -0.348 5.348 18 C 0.295 3.705 19 O -0.301 6.301 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.106 4.106 24 C -0.030 4.030 25 N -0.199 5.199 26 C -0.076 4.076 27 C -0.165 4.165 28 C -0.033 4.033 29 C -0.082 4.082 30 H 0.061 0.939 31 H 0.213 0.787 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.156 0.844 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.699 -17.337 -8.980 20.083 hybrid contribution 0.570 1.040 0.748 1.402 sum -4.129 -16.297 -8.232 18.720 Atomic orbital electron populations 1.69646 1.05026 1.25196 1.58735 1.24626 0.95430 0.97296 1.04156 0.86309 0.78474 0.84057 0.77671 1.21590 1.21931 1.21559 1.19132 0.90767 0.84249 1.39901 0.91647 1.42282 1.05367 0.99811 1.86232 1.20960 0.93041 0.84767 0.98227 1.21509 0.93346 0.95560 0.85538 0.91265 1.21906 0.98126 0.94185 1.02365 1.21502 0.98691 0.98262 0.97078 1.21999 0.99891 0.97239 0.98087 1.22088 0.92244 0.85591 1.02349 1.47695 1.44244 1.24892 1.17990 1.18231 0.86265 0.82816 0.83152 1.91197 1.32033 1.32796 1.74122 1.20264 0.94517 0.99596 0.94464 1.21186 0.92614 0.97673 0.99693 1.20833 0.99851 1.00076 0.91089 1.19080 0.94081 1.01767 0.95687 1.23172 0.99307 0.93802 0.86734 1.67354 1.15586 1.11168 1.25799 1.22115 0.88690 0.97421 0.99331 1.21981 1.01523 1.00686 0.92346 1.18115 0.93116 0.97982 0.94044 1.21298 1.00060 0.96507 0.90326 0.93896 0.78727 0.96666 0.93912 0.91555 0.90869 0.92050 0.91860 0.91654 0.91240 0.91765 0.89226 0.84730 0.84689 0.82087 0.83139 0.84367 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.55 13.06 55.49 0.72 -28.83 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 3 Si 0.90 23.66 29.55 -169.99 -5.02 18.64 16 4 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.21 -6.14 9.71 -15.06 -0.15 -6.29 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.69 -18.36 3.24 -59.90 -0.19 -18.55 16 10 C 0.16 3.34 4.87 -4.04 -0.02 3.32 16 11 C 0.14 2.34 2.92 -67.60 -0.20 2.15 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -1.58 5.36 -26.61 -0.14 -1.73 16 14 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 15 C -0.13 -1.27 6.10 -26.38 -0.16 -1.43 16 16 C 0.10 1.12 4.82 -3.48 -0.02 1.11 16 17 N -0.61 -9.46 2.97 -166.04 -0.49 -9.96 16 18 C 0.51 9.53 6.72 -12.31 -0.08 9.45 16 19 O -0.43 -10.26 10.67 5.32 0.06 -10.20 16 20 C -0.08 -1.33 5.20 -104.95 -0.55 -1.88 16 21 C -0.09 -1.21 7.25 -39.55 -0.29 -1.50 16 22 C -0.10 -1.10 9.77 -39.59 -0.39 -1.49 16 23 C -0.10 -1.30 5.75 -106.78 -0.61 -1.91 16 24 C 0.14 1.59 11.04 -16.97 -0.19 1.41 16 25 N -0.49 -6.18 10.29 -13.14 -0.14 -6.31 16 26 C 0.07 0.78 11.07 -17.97 -0.20 0.58 16 27 C -0.15 -1.75 9.88 -39.35 -0.39 -2.14 16 28 C -0.03 -0.38 5.74 -106.83 -0.61 -0.99 16 29 C -0.06 -0.97 9.40 -38.78 -0.36 -1.33 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.38 10.66 7.08 -40.82 -0.29 10.37 16 32 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 33 H 0.04 0.99 6.29 -51.93 -0.33 0.66 16 34 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.65 8.06 -51.93 -0.42 0.24 16 41 H 0.09 0.93 4.62 -51.93 -0.24 0.69 16 42 H 0.13 1.56 6.27 -52.49 -0.33 1.23 16 43 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 46 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.14 2.15 8.02 -52.49 -0.42 1.73 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -35.76 371.91 -10.71 -46.47 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.64 Total: 7.85 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -4.61 Total: -4.71 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.10 Total: -63.65 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.06 Total: -10.20 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.76 -10.71 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317194131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.164 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds