Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00272 * 2 1 4 4 H 1.48497 * 109.47018 * 240.00136 * 3 2 1 5 5 H 1.48502 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47696 * 119.99432 * 3 2 1 7 7 C 1.38817 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99480 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46790 * 175.28856 * 10 9 7 12 12 H 1.08999 * 109.58799 * 309.13793 * 11 10 9 13 13 C 1.53188 * 109.58880 * 188.70896 * 11 10 9 14 14 C 1.53037 * 109.31587 * 185.57992 * 13 11 10 15 15 C 1.53044 * 109.53786 * 61.36666 * 14 13 11 16 16 C 1.53628 * 109.23762 * 298.51139 * 15 14 13 17 17 N 1.46928 * 109.58217 * 69.42162 * 11 10 9 18 18 C 1.34772 * 120.63640 * 353.37193 * 17 11 10 19 19 O 1.21555 * 119.99429 * 6.43436 * 18 17 11 20 20 C 1.47884 * 120.00411 * 186.43869 * 18 17 11 21 21 C 1.40597 * 119.73059 * 37.71127 * 20 18 17 22 22 C 1.35850 * 120.95660 * 180.02562 * 21 20 18 23 23 C 1.40499 * 119.87621 * 359.97438 * 22 21 20 24 24 C 1.40482 * 121.84278 * 179.97438 * 23 22 21 25 25 N 1.31216 * 119.94114 * 180.02562 * 24 23 22 26 26 C 1.32553 * 122.80148 * 359.97438 * 25 24 23 27 27 C 1.36224 * 121.85170 * 0.02562 * 26 25 24 28 28 C 1.40768 * 118.66917 * 359.97438 * 27 26 25 29 29 C 1.38524 * 119.72977 * 217.69031 * 20 18 17 30 30 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00444 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47198 * 55.29797 * 10 9 7 33 33 H 1.08998 * 109.47632 * 295.29184 * 10 9 7 34 34 H 1.09008 * 109.49804 * 305.53521 * 13 11 10 35 35 H 1.09007 * 109.49510 * 65.62432 * 13 11 10 36 36 H 1.08998 * 109.45777 * 181.38876 * 14 13 11 37 37 H 1.09003 * 109.45897 * 301.34389 * 14 13 11 38 38 H 1.09002 * 109.49827 * 58.58282 * 15 14 13 39 39 H 1.08992 * 109.49749 * 178.65206 * 15 14 13 40 40 H 1.08997 * 109.73953 * 295.11623 * 16 15 14 41 41 H 1.09000 * 109.66416 * 174.54846 * 16 15 14 42 42 H 1.08002 * 119.52083 * 359.97438 * 21 20 18 43 43 H 1.07999 * 120.05957 * 179.97438 * 22 21 20 44 44 H 1.08004 * 120.02912 * 359.75049 * 24 23 22 45 45 H 1.08007 * 119.07349 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.66506 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.36705 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0680 -4.8173 0.1190 12 1 0.3961 -4.6402 0.9589 13 6 1.8341 -6.1257 0.3375 14 6 0.8504 -7.2979 0.3160 15 6 0.1622 -7.3635 -1.0494 16 6 -0.6271 -6.0660 -1.2812 17 7 0.2878 -4.9276 -1.1211 18 6 0.4049 -3.9991 -2.0910 19 8 1.2442 -3.1249 -1.9972 20 6 -0.4878 -4.0439 -3.2692 21 6 -1.8343 -4.4159 -3.1101 22 6 -2.6760 -4.4658 -4.1752 23 6 -2.2020 -4.1420 -5.4576 24 6 -3.0359 -4.1803 -6.5875 25 7 -2.5538 -3.8709 -7.7680 26 6 -1.2911 -3.5148 -7.9572 27 6 -0.4016 -3.4463 -6.9278 28 6 -0.8448 -3.7640 -5.6300 29 6 0.0094 -3.7185 -4.5205 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.7464 -3.6789 0.8454 33 1 2.6200 -3.7520 -0.9286 34 1 2.5698 -6.2535 -0.4566 35 1 2.3410 -6.0938 1.3020 36 1 1.3898 -8.2279 0.4959 37 1 0.1005 -7.1570 1.0944 38 1 0.9136 -7.4796 -1.8304 39 1 -0.5205 -8.2128 -1.0722 40 1 -1.4346 -5.9912 -0.5528 41 1 -1.0406 -6.0635 -2.2897 42 1 -2.2046 -4.6664 -2.1269 43 1 -3.7076 -4.7539 -4.0364 44 1 -4.0718 -4.4685 -6.4852 45 1 -0.9580 -3.2728 -8.9557 46 1 0.6229 -3.1534 -7.1037 47 1 1.0442 -3.4332 -4.6396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317194131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = 55.055464 kcal Electronic energy + Delta-G solvation = -29984.198894 eV Core-core repulsion = 26132.818507 eV Total energy + Delta-G solvation = -3851.380387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08683 -41.23173 -38.51915 -37.95374 -36.27244 -34.19133 -33.92388 -33.62014 -31.99651 -31.45789 -30.63327 -27.80940 -26.31112 -25.53660 -24.75675 -24.24517 -23.47033 -22.72445 -21.75786 -20.53825 -19.43152 -18.82469 -18.14229 -17.62111 -17.08166 -16.78971 -16.66678 -16.05731 -15.88430 -15.63824 -15.44223 -15.25864 -15.13158 -14.99218 -14.87203 -14.53546 -14.29455 -14.12482 -13.77299 -13.61983 -13.55607 -13.34558 -13.14980 -13.02180 -12.78270 -12.65649 -12.22120 -12.10213 -12.07337 -11.85828 -11.72019 -11.51014 -11.36372 -11.16799 -10.91085 -10.55524 -10.17814 -9.84917 -9.48405 -9.08193 -8.66422 -7.86937 -5.05848 -0.73919 -0.28165 0.85543 1.40526 1.45124 1.50485 1.65743 2.06560 2.32731 2.59209 3.05392 3.43649 3.47568 3.53007 3.56314 3.77578 3.81158 3.83125 3.88283 3.99896 4.06435 4.11746 4.15074 4.30223 4.34983 4.40413 4.48138 4.59575 4.62897 4.68563 4.74604 4.75677 4.87010 4.95137 4.99318 5.04174 5.06212 5.10936 5.14689 5.24008 5.26333 5.30594 5.34271 5.48733 5.52752 5.62950 5.74296 5.83412 6.34422 6.58315 6.96381 7.39688 7.45896 8.20161 8.43273 9.37583 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004527 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.380259 B = 6183.893181 C = 8699.784067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.965 3.035 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.214 4.214 8 H 0.061 0.939 9 N -0.704 5.704 10 C 0.161 3.839 11 C 0.148 3.852 12 H 0.066 0.934 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.092 3.908 17 N -0.604 5.604 18 C 0.511 3.489 19 O -0.503 6.503 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.073 4.073 23 C -0.116 4.116 24 C 0.151 3.849 25 N -0.508 5.508 26 C 0.070 3.930 27 C -0.161 4.161 28 C -0.043 4.043 29 C -0.081 4.081 30 H 0.245 0.755 31 H 0.367 0.633 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.150 0.850 43 H 0.182 0.818 44 H 0.202 0.798 45 H 0.177 0.823 46 H 0.148 0.852 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -20.662 -8.967 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.346 4.346 8 H 0.079 0.921 9 N -0.345 5.345 10 C 0.034 3.966 11 C 0.044 3.956 12 H 0.084 0.916 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.166 4.166 16 C -0.029 4.029 17 N -0.340 5.340 18 C 0.298 3.702 19 O -0.376 6.376 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.020 4.020 25 N -0.216 5.216 26 C -0.072 4.072 27 C -0.180 4.180 28 C -0.048 4.048 29 C -0.100 4.100 30 H 0.054 0.946 31 H 0.198 0.802 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.168 0.832 43 H 0.200 0.800 44 H 0.219 0.781 45 H 0.194 0.806 46 H 0.166 0.834 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.980 -20.065 -9.731 23.367 hybrid contribution 1.230 1.684 0.779 2.226 sum -5.750 -18.381 -8.952 21.238 Atomic orbital electron populations 1.69806 1.06324 1.25248 1.61159 1.25352 0.96339 1.00387 1.05231 0.85310 0.77240 0.80049 0.77838 1.21631 1.22036 1.20196 1.19440 0.90779 0.85859 1.38560 0.92140 1.42292 1.04694 1.00639 1.86872 1.20965 0.93988 0.84944 0.96692 1.21401 0.92720 0.95627 0.85813 0.91561 1.21864 0.98323 0.93112 1.02531 1.21503 0.98317 0.97562 0.97609 1.21992 1.00059 0.97078 0.97497 1.22463 0.92151 0.84626 1.03686 1.47857 1.44145 1.25288 1.16744 1.18854 0.85328 0.82079 0.83921 1.91168 1.34905 1.35418 1.76125 1.20226 0.95800 1.01256 0.93270 1.21297 0.91281 0.98719 1.01241 1.21302 1.01389 0.96958 0.89549 1.19407 0.93564 1.01762 0.97053 1.23810 1.00663 0.91918 0.85638 1.67463 1.15900 1.11790 1.26476 1.22541 0.88362 0.96061 1.00249 1.22166 1.02493 1.01369 0.92013 1.18308 0.93972 0.98489 0.94059 1.21257 0.99813 0.97604 0.91311 0.94639 0.80157 0.96836 0.96077 0.92422 0.89917 0.89785 0.90899 0.92579 0.87874 0.89884 0.88183 0.83204 0.80040 0.78130 0.80624 0.83380 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.95 13.06 21.65 0.28 -63.66 16 2 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 3 Si 0.97 50.51 29.55 68.60 2.03 52.54 16 4 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 5 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 6 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.21 -13.22 9.71 84.03 0.82 -12.40 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.70 -39.40 3.24 -343.43 -1.11 -40.51 16 10 C 0.16 7.22 4.87 86.38 0.42 7.65 16 11 C 0.15 4.91 2.92 44.97 0.13 5.04 16 12 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.12 -2.87 5.36 30.67 0.16 -2.71 16 14 C -0.11 -1.86 5.88 30.62 0.18 -1.68 16 15 C -0.13 -2.02 6.10 30.82 0.19 -1.83 16 16 C 0.09 1.86 4.82 86.51 0.42 2.27 16 17 N -0.60 -18.94 2.97 -797.51 -2.37 -21.30 16 18 C 0.51 20.15 6.72 86.80 0.58 20.73 16 19 O -0.50 -25.74 10.67 -3.89 -0.04 -25.78 16 20 C -0.10 -3.32 5.20 -20.08 -0.10 -3.42 16 21 C -0.11 -2.62 7.25 22.29 0.16 -2.45 16 22 C -0.07 -1.38 9.77 22.27 0.22 -1.16 16 23 C -0.12 -2.62 5.75 -21.26 -0.12 -2.74 16 24 C 0.15 2.87 11.04 85.33 0.94 3.81 16 25 N -0.51 -11.39 10.29 -195.50 -2.01 -13.41 16 26 C 0.07 1.50 11.07 84.11 0.93 2.43 16 27 C -0.16 -3.83 9.88 22.42 0.22 -3.61 16 28 C -0.04 -1.19 5.74 -21.29 -0.12 -1.31 16 29 C -0.08 -2.63 9.40 22.79 0.21 -2.42 16 30 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.37 21.81 7.08 -92.71 -0.66 21.16 16 32 H 0.01 0.62 8.13 -2.38 -0.02 0.60 16 33 H 0.02 1.06 6.29 -2.39 -0.02 1.05 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 41 H 0.10 1.85 4.62 -2.39 -0.01 1.84 16 42 H 0.15 3.12 6.27 -2.91 -0.02 3.10 16 43 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.20 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 46 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 47 H 0.12 4.19 8.02 -2.91 -0.02 4.16 16 Total: -1.00 -84.20 371.91 2.82 -81.38 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.33 Total: 29.25 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.71 Total: 1.50 kcal Atomic # 7 Polarization: -133.67 SS G_CDS: -5.21 Total: -138.88 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.04 Total: -25.78 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.03 Total: 52.54 kcal Total: -84.20 2.82 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317194131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.433 kcal (2) G-P(sol) polarization free energy of solvation -84.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds