Wall clock time and date at job start Sat Apr 11 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00264 * 2 1 4 4 H 1.48503 * 109.46867 * 270.00417 * 3 2 1 5 5 H 1.48502 * 109.46796 * 30.00026 * 3 2 1 6 6 H 1.48493 * 109.47352 * 150.00302 * 3 2 1 7 7 C 1.38813 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47396 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.91367 * 302.55555 * 11 10 9 13 13 C 1.55156 * 111.00271 * 66.45090 * 11 10 9 14 14 C 1.54327 * 102.94352 * 153.58002 * 13 11 10 15 15 N 1.47031 * 107.26879 * 337.80788 * 14 13 11 16 16 C 1.34775 * 125.64581 * 178.89516 * 15 14 13 17 17 O 1.21283 * 119.99741 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00289 * 0.02563 * 16 15 14 19 19 C 1.50700 * 109.46780 * 180.02562 * 18 16 15 20 20 C 1.36099 * 120.12433 * 264.99373 * 19 18 16 21 21 C 1.39322 * 121.06615 * 180.02562 * 20 19 18 22 22 C 1.36173 * 120.87015 * 0.02562 * 21 20 19 23 23 C 1.40394 * 119.61443 * 359.97438 * 22 21 20 24 24 C 1.40768 * 121.39059 * 180.02562 * 23 22 21 25 25 C 1.36577 * 118.15435 * 179.97438 * 24 23 22 26 26 C 1.39341 * 119.93924 * 0.02562 * 25 24 23 27 27 N 1.31081 * 121.74855 * 0.02562 * 26 25 24 28 28 C 1.33689 * 121.32410 * 359.70381 * 27 26 25 29 29 C 1.47425 * 108.70103 * 358.93822 * 15 14 13 30 30 H 0.97001 * 120.00348 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99738 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47556 * 59.99831 * 10 9 7 33 33 H 1.09005 * 109.47172 * 300.00236 * 10 9 7 34 34 H 1.09004 * 110.72307 * 35.21911 * 13 11 10 35 35 H 1.09000 * 110.72519 * 271.94129 * 13 11 10 36 36 H 1.08998 * 109.88371 * 97.22223 * 14 13 11 37 37 H 1.08994 * 109.88463 * 218.39518 * 14 13 11 38 38 H 1.09004 * 109.46389 * 299.99687 * 18 16 15 39 39 H 1.08988 * 109.47096 * 59.99935 * 18 16 15 40 40 H 1.08001 * 119.47130 * 0.02970 * 20 19 18 41 41 H 1.07996 * 119.56550 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.19263 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.92292 * 359.97438 * 24 23 22 44 44 H 1.07999 * 120.02847 * 180.02562 * 25 24 23 45 45 H 1.07995 * 119.12262 * 179.97438 * 26 25 24 46 46 H 1.09000 * 110.36875 * 265.29207 * 29 15 14 47 47 H 1.09003 * 110.45479 * 143.01251 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3942 -4.7596 0.8567 13 6 0.2631 -4.8661 -1.3293 14 6 -0.1196 -6.3562 -1.4505 15 7 0.8350 -7.1198 -0.6335 16 6 0.8269 -8.4562 -0.4595 17 8 1.6667 -8.9818 0.2402 18 6 -0.2257 -9.2976 -1.1342 19 6 -0.0138 -10.7468 -0.7794 20 6 0.7001 -11.5558 -1.6090 21 6 0.9076 -12.8985 -1.3006 22 6 0.4003 -13.4396 -0.1586 23 6 -0.3413 -12.6345 0.7207 24 6 -0.8822 -13.1547 1.9116 25 6 -1.5921 -12.3123 2.7188 26 6 -1.7637 -10.9788 2.3530 27 7 -1.2594 -10.4978 1.2427 28 6 -0.5499 -11.2674 0.4110 29 6 1.8019 -6.1812 -0.0353 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6847 -3.7146 0.8894 33 1 2.6847 -3.7145 -0.8905 34 1 0.8885 -4.5592 -2.1677 35 1 -0.6289 -4.2430 -1.2639 36 1 -1.1323 -6.5103 -1.0782 37 1 -0.0527 -6.6727 -2.4913 38 1 -1.2134 -8.9822 -0.7979 39 1 -0.1527 -9.1732 -2.2145 40 1 1.1125 -11.1504 -2.5212 41 1 1.4775 -13.5187 -1.9766 42 1 0.5674 -14.4819 0.0695 43 1 -0.7398 -14.1913 2.1795 44 1 -2.0202 -12.6795 3.6399 45 1 -2.3277 -10.3244 3.0009 46 1 2.6964 -6.1124 -0.6543 47 1 2.0636 -6.4963 0.9748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317331527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:09 Heat of formation + Delta-G solvation = 30.997174 kcal Electronic energy + Delta-G solvation = -28084.738468 eV Core-core repulsion = 24232.314835 eV Total energy + Delta-G solvation = -3852.423633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19360 -39.86206 -37.81019 -37.15199 -34.64299 -34.31668 -32.31356 -31.51735 -30.79267 -30.16432 -29.11359 -27.77272 -25.21422 -24.41162 -23.84313 -23.05907 -22.38072 -21.38338 -19.97207 -19.07575 -18.54226 -17.23098 -17.21880 -17.04749 -16.89196 -16.14874 -15.34862 -15.00756 -14.78861 -14.52747 -14.44792 -14.14704 -14.08039 -13.62259 -13.48619 -13.32900 -13.20302 -13.03942 -12.68220 -12.60197 -12.41451 -12.02479 -11.96138 -11.86033 -11.58165 -11.48949 -11.15663 -10.85253 -10.74306 -10.63733 -10.46332 -10.33908 -10.03734 -9.78145 -9.70078 -9.66308 -9.00776 -8.87250 -8.52774 -8.42112 -6.91999 -5.76496 -3.04939 0.12680 0.59277 1.71925 2.66289 2.73944 3.10701 3.44143 3.49493 3.51129 3.86821 4.06527 4.21631 4.44884 4.49912 4.53516 4.62692 4.64293 4.76858 4.82222 4.87607 5.01589 5.03624 5.06623 5.16811 5.20261 5.34238 5.38243 5.50400 5.56023 5.58046 5.70200 5.72226 5.76007 5.81139 5.95745 6.08025 6.08586 6.11815 6.15529 6.16929 6.25520 6.29720 6.42542 6.50195 6.60488 6.74578 6.87401 7.61653 7.70777 7.70960 8.25869 8.42523 9.53906 10.11191 10.46288 11.46435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.001961 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.079643 B =14274.088621 C =14791.560578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.120 4.120 14 C 0.098 3.902 15 N -0.618 5.618 16 C 0.537 3.463 17 O -0.540 6.540 18 C -0.092 4.092 19 C -0.036 4.036 20 C -0.094 4.094 21 C -0.111 4.111 22 C -0.101 4.101 23 C -0.102 4.102 24 C -0.059 4.059 25 C -0.177 4.177 26 C 0.131 3.869 27 N -0.467 5.467 28 C 0.143 3.857 29 C 0.114 3.886 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.159 0.841 46 H 0.068 0.932 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -30.154 -1.995 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.102 0.898 13 C -0.158 4.158 14 C -0.025 4.025 15 N -0.352 5.352 16 C 0.326 3.674 17 O -0.417 6.417 18 C -0.132 4.132 19 C -0.037 4.037 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.104 4.104 24 C -0.085 4.085 25 C -0.197 4.197 26 C -0.042 4.042 27 N -0.175 5.175 28 C 0.021 3.979 29 C -0.008 4.008 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.176 0.824 46 H 0.086 0.914 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.140 -29.512 -1.931 29.864 hybrid contribution 0.227 0.124 0.304 0.400 sum -3.913 -29.388 -1.626 29.692 Atomic orbital electron populations 1.69652 1.05088 1.25638 1.57872 1.24736 0.95542 0.97686 1.03081 0.86183 0.78665 0.83819 0.77491 1.21744 1.21795 1.20774 1.19233 0.91058 0.84124 1.42542 0.91175 1.42305 1.05869 0.99813 1.89518 1.20545 0.92779 0.84917 0.98124 1.22558 0.98071 0.93687 0.98171 0.89793 1.22632 1.01591 0.93160 0.98400 1.22162 0.92871 0.92735 0.94703 1.48520 1.31616 1.05540 1.49514 1.19963 0.85505 0.80670 0.81259 1.90701 1.39943 1.71570 1.39499 1.20523 1.00448 0.90753 1.01477 1.18968 0.97320 0.94601 0.92789 1.20781 0.97061 0.93716 0.99818 1.20868 0.99551 0.95167 0.97266 1.20952 0.97453 0.99423 0.94154 1.18802 1.00484 0.94629 0.96511 1.21444 0.94467 1.00114 0.92503 1.21890 1.01144 0.95296 1.01343 1.22986 0.94854 0.93468 0.92904 1.67999 1.08428 1.37100 1.03944 1.18610 0.95737 0.89424 0.94125 1.22219 0.91829 0.87895 0.98884 0.93532 0.78223 0.96048 0.96002 0.90231 0.89474 0.91380 0.91605 0.87045 0.88178 0.85311 0.85392 0.85332 0.84517 0.84577 0.82416 0.91362 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.22 5.45 -59.91 -0.33 -18.54 16 10 C 0.16 3.26 5.71 -4.04 -0.02 3.24 16 11 C -0.11 -1.70 3.10 -88.47 -0.27 -1.97 16 12 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.70 6.13 -24.90 -0.15 -1.85 16 14 C 0.10 1.15 6.49 -3.06 -0.02 1.13 16 15 N -0.62 -8.67 3.33 -170.51 -0.57 -9.24 16 16 C 0.54 7.96 7.84 -10.99 -0.09 7.87 16 17 O -0.54 -10.04 16.29 5.55 0.09 -9.95 16 18 C -0.09 -1.04 4.75 -29.03 -0.14 -1.18 16 19 C -0.04 -0.43 4.38 -104.52 -0.46 -0.89 16 20 C -0.09 -0.93 9.57 -39.95 -0.38 -1.31 16 21 C -0.11 -0.93 9.95 -39.92 -0.40 -1.33 16 22 C -0.10 -0.87 9.78 -39.51 -0.39 -1.26 16 23 C -0.10 -1.09 5.74 -106.80 -0.61 -1.70 16 24 C -0.06 -0.49 9.90 -39.23 -0.39 -0.88 16 25 C -0.18 -1.40 10.03 -39.77 -0.40 -1.80 16 26 C 0.13 1.30 11.15 -17.46 -0.19 1.11 16 27 N -0.47 -6.07 9.51 -10.97 -0.10 -6.17 16 28 C 0.14 1.82 6.58 -84.85 -0.56 1.26 16 29 C 0.11 1.73 6.37 -2.53 -0.02 1.71 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.38 9.96 7.53 -40.82 -0.31 9.65 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.11 1.22 7.71 -51.93 -0.40 0.82 16 39 H 0.10 0.84 8.04 -51.94 -0.42 0.42 16 40 H 0.13 1.00 8.04 -52.49 -0.42 0.58 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 47 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -35.60 392.12 -11.02 -46.62 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.99 Total: 6.44 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -4.73 Total: -5.16 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.27 Total: -61.24 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.60 -11.02 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317331527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.617 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds