Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00264 * 2 1 4 4 H 1.48503 * 109.46867 * 270.00417 * 3 2 1 5 5 H 1.48502 * 109.46796 * 30.00026 * 3 2 1 6 6 H 1.48493 * 109.47352 * 150.00302 * 3 2 1 7 7 C 1.38813 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47396 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.91367 * 302.55555 * 11 10 9 13 13 C 1.55156 * 111.00271 * 66.45090 * 11 10 9 14 14 C 1.54327 * 102.94352 * 153.58002 * 13 11 10 15 15 N 1.47031 * 107.26879 * 337.80788 * 14 13 11 16 16 C 1.34775 * 125.64581 * 178.89516 * 15 14 13 17 17 O 1.21283 * 119.99741 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00289 * 0.02563 * 16 15 14 19 19 C 1.50700 * 109.46780 * 180.02562 * 18 16 15 20 20 C 1.36099 * 120.12433 * 264.99373 * 19 18 16 21 21 C 1.39322 * 121.06615 * 180.02562 * 20 19 18 22 22 C 1.36173 * 120.87015 * 0.02562 * 21 20 19 23 23 C 1.40394 * 119.61443 * 359.97438 * 22 21 20 24 24 C 1.40768 * 121.39059 * 180.02562 * 23 22 21 25 25 C 1.36577 * 118.15435 * 179.97438 * 24 23 22 26 26 C 1.39341 * 119.93924 * 0.02562 * 25 24 23 27 27 N 1.31081 * 121.74855 * 0.02562 * 26 25 24 28 28 C 1.33689 * 121.32410 * 359.70381 * 27 26 25 29 29 C 1.47425 * 108.70103 * 358.93822 * 15 14 13 30 30 H 0.97001 * 120.00348 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99738 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47556 * 59.99831 * 10 9 7 33 33 H 1.09005 * 109.47172 * 300.00236 * 10 9 7 34 34 H 1.09004 * 110.72307 * 35.21911 * 13 11 10 35 35 H 1.09000 * 110.72519 * 271.94129 * 13 11 10 36 36 H 1.08998 * 109.88371 * 97.22223 * 14 13 11 37 37 H 1.08994 * 109.88463 * 218.39518 * 14 13 11 38 38 H 1.09004 * 109.46389 * 299.99687 * 18 16 15 39 39 H 1.08988 * 109.47096 * 59.99935 * 18 16 15 40 40 H 1.08001 * 119.47130 * 0.02970 * 20 19 18 41 41 H 1.07996 * 119.56550 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.19263 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.92292 * 359.97438 * 24 23 22 44 44 H 1.07999 * 120.02847 * 180.02562 * 25 24 23 45 45 H 1.07995 * 119.12262 * 179.97438 * 26 25 24 46 46 H 1.09000 * 110.36875 * 265.29207 * 29 15 14 47 47 H 1.09003 * 110.45479 * 143.01251 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3942 -4.7596 0.8567 13 6 0.2631 -4.8661 -1.3293 14 6 -0.1196 -6.3562 -1.4505 15 7 0.8350 -7.1198 -0.6335 16 6 0.8269 -8.4562 -0.4595 17 8 1.6667 -8.9818 0.2402 18 6 -0.2257 -9.2976 -1.1342 19 6 -0.0138 -10.7468 -0.7794 20 6 0.7001 -11.5558 -1.6090 21 6 0.9076 -12.8985 -1.3006 22 6 0.4003 -13.4396 -0.1586 23 6 -0.3413 -12.6345 0.7207 24 6 -0.8822 -13.1547 1.9116 25 6 -1.5921 -12.3123 2.7188 26 6 -1.7637 -10.9788 2.3530 27 7 -1.2594 -10.4978 1.2427 28 6 -0.5499 -11.2674 0.4110 29 6 1.8019 -6.1812 -0.0353 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6847 -3.7146 0.8894 33 1 2.6847 -3.7145 -0.8905 34 1 0.8885 -4.5592 -2.1677 35 1 -0.6289 -4.2430 -1.2639 36 1 -1.1323 -6.5103 -1.0782 37 1 -0.0527 -6.6727 -2.4913 38 1 -1.2134 -8.9822 -0.7979 39 1 -0.1527 -9.1732 -2.2145 40 1 1.1125 -11.1504 -2.5212 41 1 1.4775 -13.5187 -1.9766 42 1 0.5674 -14.4819 0.0695 43 1 -0.7398 -14.1913 2.1795 44 1 -2.0202 -12.6795 3.6399 45 1 -2.3277 -10.3244 3.0009 46 1 2.6964 -6.1124 -0.6543 47 1 2.0636 -6.4963 0.9748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317331527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = 9.177618 kcal Electronic energy + Delta-G solvation = -28085.684635 eV Core-core repulsion = 24232.314835 eV Total energy + Delta-G solvation = -3853.369800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91776 -40.97264 -38.94492 -37.96398 -36.42984 -35.05698 -33.95003 -32.47039 -31.68932 -31.44950 -30.32713 -28.77516 -26.84085 -25.14676 -24.54607 -24.45431 -23.90787 -22.18298 -21.35673 -20.13602 -19.19162 -19.15008 -18.16835 -17.93711 -17.71021 -17.36745 -16.56132 -16.31870 -15.85664 -15.56835 -15.40575 -15.16984 -15.07103 -14.96725 -14.83804 -14.67914 -14.03744 -13.94702 -13.89649 -13.78546 -13.68058 -13.04204 -12.96138 -12.89719 -12.74200 -12.65625 -12.55192 -12.21486 -12.14422 -12.13508 -11.78787 -11.67920 -11.61631 -11.45467 -10.93971 -10.92038 -10.40704 -9.69543 -9.67287 -9.11607 -8.99319 -7.94523 -5.23057 -0.53258 -0.09056 1.02376 1.48423 1.49777 1.58253 1.62304 1.92377 2.11454 2.56622 3.13371 3.37975 3.39524 3.43098 3.54503 3.65129 3.80398 3.83415 3.89020 3.95473 4.07262 4.12627 4.25841 4.29573 4.30840 4.38277 4.43040 4.45484 4.55323 4.56766 4.60997 4.64034 4.79320 4.83751 4.88217 5.01545 5.07188 5.08932 5.14771 5.16011 5.23326 5.27753 5.40488 5.46885 5.48084 5.50595 5.64275 5.96871 6.27718 6.51375 6.99791 7.13379 7.34789 8.09159 8.34178 9.28839 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.001961 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.079643 B =14274.088621 C =14791.560578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.165 3.835 11 C -0.097 4.097 12 H 0.073 0.927 13 C -0.115 4.115 14 C 0.104 3.896 15 N -0.619 5.619 16 C 0.535 3.465 17 O -0.585 6.585 18 C -0.081 4.081 19 C -0.071 4.071 20 C -0.096 4.096 21 C -0.119 4.119 22 C -0.100 4.100 23 C -0.127 4.127 24 C -0.060 4.060 25 C -0.178 4.178 26 C 0.115 3.885 27 N -0.508 5.508 28 C 0.111 3.889 29 C 0.121 3.879 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.016 0.984 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 -32.223 -2.788 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.039 3.961 11 C -0.116 4.116 12 H 0.091 0.909 13 C -0.153 4.153 14 C -0.018 4.018 15 N -0.352 5.352 16 C 0.325 3.675 17 O -0.465 6.465 18 C -0.120 4.120 19 C -0.072 4.072 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.085 4.085 25 C -0.198 4.198 26 C -0.057 4.057 27 N -0.216 5.216 28 C -0.010 4.010 29 C -0.003 4.003 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.164 0.836 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.189 0.811 44 H 0.187 0.813 45 H 0.191 0.809 46 H 0.092 0.908 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.887 -31.600 -2.740 31.956 hybrid contribution 0.179 0.679 0.608 0.929 sum -3.708 -30.921 -2.132 31.216 Atomic orbital electron populations 1.69800 1.06480 1.26089 1.59400 1.25545 0.96438 1.00999 1.03684 0.85149 0.77635 0.79536 0.77480 1.21234 1.22203 1.19697 1.19615 0.91487 0.85341 1.41303 0.90801 1.42465 1.05706 1.00817 1.89400 1.20631 0.93322 0.84313 0.97882 1.22336 0.97379 0.92787 0.99117 0.90883 1.22566 1.00856 0.95010 0.96869 1.22250 0.92840 0.90490 0.96195 1.48602 1.31619 1.05527 1.49457 1.20627 0.85550 0.80696 0.80600 1.90668 1.41915 1.72382 1.41511 1.20493 0.98723 0.90114 1.02708 1.19189 0.99216 0.95082 0.93689 1.21130 0.96006 0.94403 1.00016 1.21259 0.99621 0.94965 0.97852 1.21372 0.96159 1.00684 0.93584 1.19192 1.01368 0.94321 0.97988 1.21897 0.93420 1.01721 0.91496 1.22226 1.00777 0.94336 1.02428 1.23468 0.94644 0.95037 0.92538 1.67953 1.09988 1.38358 1.05315 1.18973 0.96608 0.90717 0.94713 1.22031 0.92292 0.87507 0.98424 0.93960 0.79126 0.96569 0.95357 0.90419 0.90141 0.89950 0.88458 0.87133 0.85158 0.83564 0.82426 0.82225 0.81143 0.81305 0.80864 0.90841 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -37.37 5.45 -343.45 -1.87 -39.25 16 10 C 0.17 6.61 5.71 86.38 0.49 7.11 16 11 C -0.10 -3.14 3.10 -9.40 -0.03 -3.17 16 12 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 13 C -0.12 -3.18 6.13 31.78 0.19 -2.99 16 14 C 0.10 2.27 6.49 86.73 0.56 2.83 16 15 N -0.62 -17.00 3.33 -811.77 -2.70 -19.70 16 16 C 0.53 15.78 7.84 87.66 0.69 16.47 16 17 O -0.58 -22.28 16.29 -3.04 -0.05 -22.33 16 18 C -0.08 -1.78 4.75 29.10 0.14 -1.64 16 19 C -0.07 -1.68 4.38 -19.80 -0.09 -1.77 16 20 C -0.10 -1.78 9.57 22.03 0.21 -1.57 16 21 C -0.12 -1.77 9.95 22.05 0.22 -1.55 16 22 C -0.10 -1.51 9.78 22.31 0.22 -1.29 16 23 C -0.13 -2.58 5.74 -21.28 -0.12 -2.70 16 24 C -0.06 -0.88 9.90 22.50 0.22 -0.66 16 25 C -0.18 -2.57 10.03 22.15 0.22 -2.35 16 26 C 0.12 2.30 11.15 85.07 0.95 3.25 16 27 N -0.51 -13.56 9.51 -188.63 -1.79 -15.35 16 28 C 0.11 2.86 6.58 40.29 0.27 3.13 16 29 C 0.12 3.67 6.37 86.85 0.55 4.23 16 30 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.38 19.92 7.53 -92.71 -0.70 19.22 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.03 1.11 8.11 -2.38 -0.02 1.09 16 34 H 0.08 2.19 8.01 -2.39 -0.02 2.17 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 2.41 7.71 -2.38 -0.02 2.39 16 39 H 0.13 1.92 8.04 -2.39 -0.02 1.91 16 40 H 0.15 2.00 8.04 -2.91 -0.02 1.98 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 46 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 47 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -79.08 392.12 2.17 -76.91 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.28 Total: 29.35 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.00 Total: 0.63 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -6.08 Total: -132.74 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -79.08 2.17 -76.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317331527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.086 kcal (2) G-P(sol) polarization free energy of solvation -79.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds