Wall clock time and date at job start Sat Apr 11 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00176 * 2 1 4 4 H 1.48497 * 109.46998 * 87.03233 * 3 2 1 5 5 H 1.48494 * 109.46953 * 327.03242 * 3 2 1 6 6 H 1.48499 * 109.46972 * 207.03367 * 3 2 1 7 7 C 1.38816 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 13.27865 * 7 2 1 9 9 N 1.36935 * 120.00046 * 193.27249 * 7 2 1 10 10 C 1.47421 * 125.64756 * 38.74084 * 9 7 2 11 11 C 1.54915 * 104.83326 * 204.09162 * 10 9 7 12 12 C 1.55157 * 101.58216 * 322.99285 * 11 10 9 13 13 C 1.47027 * 125.64987 * 218.43406 * 9 7 2 14 14 H 1.09004 * 109.88263 * 59.55876 * 13 9 7 15 15 C 1.52997 * 109.87930 * 298.39539 * 13 9 7 16 16 N 1.46498 * 109.47289 * 61.76565 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.21316 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.50702 * 109.46820 * 180.02562 * 19 17 16 21 21 C 1.36176 * 120.19239 * 264.72297 * 20 19 17 22 22 C 1.39310 * 120.86595 * 179.72787 * 21 20 19 23 23 C 1.36107 * 121.07099 * 0.57595 * 22 21 20 24 24 C 1.40569 * 119.74680 * 359.70995 * 23 22 21 25 25 N 1.33685 * 121.08306 * 180.02562 * 24 23 22 26 26 C 1.31086 * 121.31754 * 180.02562 * 25 24 23 27 27 C 1.39338 * 121.75090 * 359.94790 * 26 25 24 28 28 C 1.36573 * 119.94133 * 0.02689 * 27 26 25 29 29 C 1.40384 * 120.19415 * 85.00244 * 20 19 17 30 30 H 0.97007 * 119.99787 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36735 * 322.92889 * 10 9 7 32 32 H 1.08994 * 110.37048 * 85.25449 * 10 9 7 33 33 H 1.09003 * 111.00198 * 81.06140 * 11 10 9 34 34 H 1.08997 * 111.00224 * 204.91648 * 11 10 9 35 35 H 1.08993 * 110.72404 * 153.86068 * 12 11 10 36 36 H 1.09000 * 110.71576 * 276.96177 * 12 11 10 37 37 H 1.09001 * 109.47102 * 181.75940 * 15 13 9 38 38 H 1.08997 * 109.47024 * 301.76136 * 15 13 9 39 39 H 0.97005 * 120.00230 * 6.20774 * 16 15 13 40 40 H 1.09000 * 109.47585 * 300.00202 * 19 17 16 41 41 H 1.08994 * 109.46939 * 60.00219 * 19 17 16 42 42 H 1.08000 * 119.56498 * 0.02697 * 21 20 19 43 43 H 1.08005 * 119.46622 * 180.26738 * 22 21 20 44 44 H 1.07997 * 120.13018 * 179.68686 * 23 22 21 45 45 H 1.07999 * 119.12062 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.02427 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.92016 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4349 2.0826 1.3982 5 1 1.4805 2.6337 -0.7618 6 1 3.5777 1.4228 -0.6364 7 6 2.0102 -1.2022 0.0005 8 1 1.4918 -2.1251 -0.2139 9 7 3.3521 -1.2180 0.2728 10 6 4.0342 -0.3854 1.2802 11 6 5.5031 -0.3000 0.7954 12 6 5.7252 -1.7245 0.2219 13 6 4.3503 -2.0726 -0.3867 14 1 4.3599 -1.8723 -1.4581 15 6 4.0235 -3.5455 -0.1326 16 7 2.7133 -3.8611 -0.7069 17 6 2.1592 -5.0717 -0.4966 18 8 2.7452 -5.8994 0.1685 19 6 0.8112 -5.3962 -1.0870 20 6 0.4209 -6.8010 -0.7059 21 6 0.6725 -7.8358 -1.5547 22 6 0.3228 -9.1406 -1.2143 23 6 -0.2897 -9.4177 -0.0308 24 6 -0.5714 -8.3755 0.8695 25 7 -1.1716 -8.6174 2.0393 26 6 -1.4369 -7.6490 2.8821 27 6 -1.1075 -6.3241 2.6038 28 6 -0.4922 -6.0075 1.4264 29 6 -0.2093 -7.0498 0.5236 30 1 -0.4850 0.8401 -0.0004 31 1 3.5882 0.6085 1.3159 32 1 3.9853 -0.8595 2.2604 33 1 5.6145 0.4559 0.0179 34 1 6.1786 -0.1043 1.6281 35 1 6.4982 -1.7148 -0.5464 36 1 5.9823 -2.4244 1.0170 37 1 4.7845 -4.1720 -0.5977 38 1 4.0045 -3.7334 0.9409 39 1 2.2444 -3.1989 -1.2385 40 1 0.0685 -4.6965 -0.7035 41 1 0.8608 -5.3143 -2.1727 42 1 1.1537 -7.6429 -2.5021 43 1 0.5368 -9.9448 -1.9027 44 1 -0.5586 -10.4342 0.2155 45 1 -1.9233 -7.8846 3.8171 46 1 -1.3388 -5.5481 3.3186 47 1 -0.2295 -4.9858 1.1947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317501140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:12 Heat of formation + Delta-G solvation = 47.035086 kcal Electronic energy + Delta-G solvation = -29329.239864 eV Core-core repulsion = 25477.511687 eV Total energy + Delta-G solvation = -3851.728177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88651 -39.29415 -37.98023 -37.00952 -34.12028 -33.87684 -32.75296 -31.28988 -30.45998 -30.06574 -29.58779 -27.48039 -24.95394 -24.17035 -23.65871 -23.51084 -21.34302 -20.76010 -19.90718 -19.40291 -18.08412 -17.41505 -16.98314 -16.85919 -16.30595 -16.14724 -15.34342 -14.98080 -14.65603 -14.50230 -14.23754 -14.14891 -13.67405 -13.60350 -13.22253 -13.14919 -12.99625 -12.83780 -12.60789 -12.44072 -12.04517 -11.78802 -11.61100 -11.52154 -11.39153 -11.33586 -11.15021 -10.95365 -10.76075 -10.54199 -10.37273 -10.24549 -9.92926 -9.63285 -9.45881 -9.38841 -8.71275 -8.68166 -8.40228 -8.08332 -6.89756 -6.12953 -3.62617 0.47227 0.92230 2.08308 2.97626 3.08247 3.22762 3.36713 3.41302 3.75515 4.23765 4.34880 4.40107 4.55358 4.78446 4.86162 4.89003 4.96808 5.05216 5.12860 5.20018 5.25961 5.29901 5.36374 5.38013 5.41912 5.48642 5.57018 5.67980 5.79124 5.89066 5.93191 6.02758 6.05491 6.07108 6.13019 6.16462 6.20632 6.27938 6.34313 6.40576 6.50613 6.53374 6.65029 6.78005 6.80314 6.92248 7.02438 7.79187 7.96715 8.08239 8.18245 8.65311 8.73628 9.50847 10.12127 11.00548 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003199 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.868913 B = 8749.913822 C = 9535.093147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.037 3.963 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.259 4.259 8 H 0.090 0.910 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.144 3.856 14 H 0.048 0.952 15 C 0.118 3.882 16 N -0.708 5.708 17 C 0.511 3.489 18 O -0.551 6.551 19 C -0.112 4.112 20 C -0.027 4.027 21 C -0.114 4.114 22 C -0.096 4.096 23 C -0.102 4.102 24 C 0.126 3.874 25 N -0.481 5.481 26 C 0.130 3.870 27 C -0.179 4.179 28 C -0.046 4.046 29 C -0.085 4.085 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.414 0.586 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.157 0.843 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -11.014 -1.743 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.164 4.164 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.192 1.192 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.328 5.328 10 C -0.007 4.007 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.037 3.963 14 H 0.066 0.934 15 C -0.008 4.008 16 N -0.361 5.361 17 C 0.297 3.703 18 O -0.430 6.430 19 C -0.152 4.152 20 C -0.028 4.028 21 C -0.132 4.132 22 C -0.116 4.116 23 C -0.121 4.121 24 C 0.005 3.995 25 N -0.189 5.189 26 C -0.043 4.043 27 C -0.199 4.199 28 C -0.072 4.072 29 C -0.087 4.087 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.174 0.826 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.210 -12.389 -1.201 12.642 hybrid contribution 0.379 2.362 -0.235 2.404 sum 2.589 -10.027 -1.436 10.455 Atomic orbital electron populations 1.69753 1.05785 1.27015 1.51879 1.25493 0.95197 0.98174 0.97574 0.86630 0.79933 0.83685 0.77082 1.21557 1.23246 1.19243 1.18632 0.80616 0.93623 1.45860 0.89277 1.44653 1.03721 1.45761 1.38700 1.21902 0.90707 0.95237 0.92903 1.22779 0.97572 0.96823 1.00258 1.22488 0.96327 0.97044 1.00134 1.21281 0.89101 0.89481 0.96487 0.93381 1.21883 0.83536 0.96865 0.98547 1.46281 1.21269 1.14920 1.53679 1.20287 0.86853 0.82262 0.80910 1.90679 1.63888 1.48172 1.40242 1.20765 0.96604 0.94749 1.03084 1.19134 0.96096 0.94676 0.92889 1.20731 1.00180 0.92274 1.00013 1.20808 0.97596 0.96635 0.96528 1.20709 0.99767 0.98327 0.93251 1.18823 0.96652 0.91629 0.92360 1.68016 1.12653 1.35705 1.02572 1.22913 0.94842 0.88711 0.97817 1.21895 1.01216 0.98248 0.98527 1.21636 0.93209 0.99531 0.92792 1.18631 1.00358 0.94195 0.95531 0.92476 0.94163 0.95185 0.91556 0.91569 0.91418 0.91343 0.93040 0.91901 0.74592 0.87224 0.87684 0.85669 0.85433 0.85050 0.82606 0.84437 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 13.97 55.49 0.78 -24.58 16 2 C 0.04 0.98 5.48 -17.43 -0.10 0.89 16 3 Si 0.90 21.26 24.76 -169.99 -4.21 17.05 16 4 H -0.29 -6.83 6.86 56.52 0.39 -6.44 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.14 6.76 56.52 0.38 -5.75 16 7 C -0.26 -6.43 9.42 -15.06 -0.14 -6.57 16 8 H 0.09 2.23 5.44 -52.48 -0.29 1.95 16 9 N -0.60 -13.02 2.65 -162.56 -0.43 -13.45 16 10 C 0.12 2.36 6.14 -2.53 -0.02 2.35 16 11 C -0.14 -2.19 7.09 -24.58 -0.17 -2.36 16 12 C -0.12 -1.79 6.48 -24.89 -0.16 -1.96 16 13 C 0.14 2.55 3.34 -66.95 -0.22 2.32 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.12 2.05 5.19 -4.04 -0.02 2.03 16 16 N -0.71 -12.37 4.36 -60.30 -0.26 -12.64 16 17 C 0.51 8.92 7.82 -10.98 -0.09 8.84 16 18 O -0.55 -11.39 16.02 5.56 0.09 -11.30 16 19 C -0.11 -1.60 5.25 -29.03 -0.15 -1.75 16 20 C -0.03 -0.39 4.38 -104.56 -0.46 -0.85 16 21 C -0.11 -1.46 9.58 -39.92 -0.38 -1.84 16 22 C -0.10 -1.13 9.94 -39.95 -0.40 -1.52 16 23 C -0.10 -1.35 9.98 -39.47 -0.39 -1.74 16 24 C 0.13 1.98 6.60 -84.85 -0.56 1.42 16 25 N -0.48 -7.32 10.34 -10.97 -0.11 -7.44 16 26 C 0.13 1.69 11.15 -17.46 -0.19 1.50 16 27 C -0.18 -2.41 10.03 -39.77 -0.40 -2.81 16 28 C -0.05 -0.71 9.36 -39.23 -0.37 -1.08 16 29 C -0.09 -1.36 5.74 -106.81 -0.61 -1.97 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 0.89 3.20 -51.93 -0.17 0.72 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 39 H 0.41 7.36 6.07 -40.82 -0.25 7.11 16 40 H 0.11 1.56 6.73 -51.93 -0.35 1.21 16 41 H 0.10 1.20 8.04 -51.93 -0.42 0.79 16 42 H 0.13 1.31 8.05 -52.49 -0.42 0.89 16 43 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 47 H 0.14 2.21 6.57 -52.49 -0.34 1.87 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -32.05 375.05 -9.79 -41.84 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.45 Total: 9.98 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -4.84 Total: -5.13 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.03 Total: -58.10 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.21 Total: 17.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.05 -9.79 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317501140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.873 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds