Wall clock time and date at job start Sat Apr 11 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00176 * 2 1 4 4 H 1.48497 * 109.46998 * 87.03233 * 3 2 1 5 5 H 1.48494 * 109.46953 * 327.03242 * 3 2 1 6 6 H 1.48499 * 109.46972 * 207.03367 * 3 2 1 7 7 C 1.38816 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 13.27865 * 7 2 1 9 9 N 1.36935 * 120.00046 * 193.27249 * 7 2 1 10 10 C 1.47421 * 125.64756 * 38.74084 * 9 7 2 11 11 C 1.54915 * 104.83326 * 204.09162 * 10 9 7 12 12 C 1.55157 * 101.58216 * 322.99285 * 11 10 9 13 13 C 1.47027 * 125.64987 * 218.43406 * 9 7 2 14 14 H 1.09004 * 109.88263 * 59.55876 * 13 9 7 15 15 C 1.52997 * 109.87930 * 298.39539 * 13 9 7 16 16 N 1.46498 * 109.47289 * 61.76565 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.21316 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.50702 * 109.46820 * 180.02562 * 19 17 16 21 21 C 1.36176 * 120.19239 * 264.72297 * 20 19 17 22 22 C 1.39310 * 120.86595 * 179.72787 * 21 20 19 23 23 C 1.36107 * 121.07099 * 0.57595 * 22 21 20 24 24 C 1.40569 * 119.74680 * 359.70995 * 23 22 21 25 25 N 1.33685 * 121.08306 * 180.02562 * 24 23 22 26 26 C 1.31086 * 121.31754 * 180.02562 * 25 24 23 27 27 C 1.39338 * 121.75090 * 359.94790 * 26 25 24 28 28 C 1.36573 * 119.94133 * 0.02689 * 27 26 25 29 29 C 1.40384 * 120.19415 * 85.00244 * 20 19 17 30 30 H 0.97007 * 119.99787 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36735 * 322.92889 * 10 9 7 32 32 H 1.08994 * 110.37048 * 85.25449 * 10 9 7 33 33 H 1.09003 * 111.00198 * 81.06140 * 11 10 9 34 34 H 1.08997 * 111.00224 * 204.91648 * 11 10 9 35 35 H 1.08993 * 110.72404 * 153.86068 * 12 11 10 36 36 H 1.09000 * 110.71576 * 276.96177 * 12 11 10 37 37 H 1.09001 * 109.47102 * 181.75940 * 15 13 9 38 38 H 1.08997 * 109.47024 * 301.76136 * 15 13 9 39 39 H 0.97005 * 120.00230 * 6.20774 * 16 15 13 40 40 H 1.09000 * 109.47585 * 300.00202 * 19 17 16 41 41 H 1.08994 * 109.46939 * 60.00219 * 19 17 16 42 42 H 1.08000 * 119.56498 * 0.02697 * 21 20 19 43 43 H 1.08005 * 119.46622 * 180.26738 * 22 21 20 44 44 H 1.07997 * 120.13018 * 179.68686 * 23 22 21 45 45 H 1.07999 * 119.12062 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.02427 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.92016 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4349 2.0826 1.3982 5 1 1.4805 2.6337 -0.7618 6 1 3.5777 1.4228 -0.6364 7 6 2.0102 -1.2022 0.0005 8 1 1.4918 -2.1251 -0.2139 9 7 3.3521 -1.2180 0.2728 10 6 4.0342 -0.3854 1.2802 11 6 5.5031 -0.3000 0.7954 12 6 5.7252 -1.7245 0.2219 13 6 4.3503 -2.0726 -0.3867 14 1 4.3599 -1.8723 -1.4581 15 6 4.0235 -3.5455 -0.1326 16 7 2.7133 -3.8611 -0.7069 17 6 2.1592 -5.0717 -0.4966 18 8 2.7452 -5.8994 0.1685 19 6 0.8112 -5.3962 -1.0870 20 6 0.4209 -6.8010 -0.7059 21 6 0.6725 -7.8358 -1.5547 22 6 0.3228 -9.1406 -1.2143 23 6 -0.2897 -9.4177 -0.0308 24 6 -0.5714 -8.3755 0.8695 25 7 -1.1716 -8.6174 2.0393 26 6 -1.4369 -7.6490 2.8821 27 6 -1.1075 -6.3241 2.6038 28 6 -0.4922 -6.0075 1.4264 29 6 -0.2093 -7.0498 0.5236 30 1 -0.4850 0.8401 -0.0004 31 1 3.5882 0.6085 1.3159 32 1 3.9853 -0.8595 2.2604 33 1 5.6145 0.4559 0.0179 34 1 6.1786 -0.1043 1.6281 35 1 6.4982 -1.7148 -0.5464 36 1 5.9823 -2.4244 1.0170 37 1 4.7845 -4.1720 -0.5977 38 1 4.0045 -3.7334 0.9409 39 1 2.2444 -3.1989 -1.2385 40 1 0.0685 -4.6965 -0.7035 41 1 0.8608 -5.3143 -2.1727 42 1 1.1537 -7.6429 -2.5021 43 1 0.5368 -9.9448 -1.9027 44 1 -0.5586 -10.4342 0.2155 45 1 -1.9233 -7.8846 3.8171 46 1 -1.3388 -5.5481 3.3186 47 1 -0.2295 -4.9858 1.1947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317501140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:11 Heat of formation + Delta-G solvation = 27.546091 kcal Electronic energy + Delta-G solvation = -29330.084970 eV Core-core repulsion = 25477.511687 eV Total energy + Delta-G solvation = -3852.573283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96758 -40.68731 -39.43357 -38.07583 -35.48015 -35.06556 -34.62086 -32.43399 -31.76855 -31.48769 -30.94947 -28.65153 -26.52115 -25.42395 -25.08979 -24.55156 -22.69589 -21.99556 -21.40680 -20.78443 -19.15311 -19.00364 -18.11571 -17.92798 -17.88864 -17.63900 -16.78125 -16.44228 -16.03429 -15.59042 -15.37271 -15.35358 -15.10729 -14.86695 -14.65934 -14.51838 -14.36850 -14.10039 -13.89017 -13.82955 -13.60322 -13.05611 -12.98069 -12.93839 -12.64209 -12.59869 -12.50830 -12.26347 -12.15125 -12.01963 -11.73519 -11.51405 -11.49485 -11.37565 -10.84943 -10.67763 -10.52637 -9.89036 -9.71624 -9.14742 -8.69424 -8.14401 -5.60076 -0.59166 -0.12535 0.97832 1.32118 1.41828 1.52144 1.69388 1.96167 2.40617 2.49248 3.09581 3.14946 3.35133 3.36519 3.47216 3.79839 3.84154 3.87092 3.91855 3.98331 4.02330 4.10510 4.16234 4.24515 4.29573 4.33892 4.48289 4.49458 4.54643 4.61514 4.68780 4.74137 4.86023 4.86321 4.98573 5.00038 5.02928 5.09344 5.13842 5.14755 5.31309 5.40740 5.47876 5.50433 5.60237 5.61095 5.92576 5.92988 6.22480 6.66063 6.83807 6.89041 7.31986 7.56407 8.24735 9.01578 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003199 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.868913 B = 8749.913822 C = 9535.093147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.018 4.018 3 Si 0.946 3.054 4 H -0.292 1.292 5 H -0.316 1.316 6 H -0.252 1.252 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.112 4.112 13 C 0.141 3.859 14 H 0.053 0.947 15 C 0.123 3.877 16 N -0.709 5.709 17 C 0.512 3.488 18 O -0.585 6.585 19 C -0.104 4.104 20 C -0.053 4.053 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.112 4.112 24 C 0.100 3.900 25 N -0.497 5.497 26 C 0.127 3.873 27 C -0.179 4.179 28 C -0.073 4.073 29 C -0.106 4.106 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.413 0.587 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.149 0.851 45 H 0.193 0.807 46 H 0.158 0.842 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -12.115 -2.564 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.215 4.215 3 Si 0.777 3.223 4 H -0.220 1.220 5 H -0.246 1.246 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.150 4.150 13 C 0.035 3.965 14 H 0.071 0.929 15 C -0.003 4.003 16 N -0.362 5.362 17 C 0.299 3.701 18 O -0.466 6.466 19 C -0.143 4.143 20 C -0.054 4.054 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.130 4.130 24 C -0.021 4.021 25 N -0.205 5.205 26 C -0.045 4.045 27 C -0.198 4.198 28 C -0.099 4.099 29 C -0.108 4.108 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.252 0.748 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.167 0.833 45 H 0.210 0.790 46 H 0.175 0.825 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.398 -13.494 -2.032 14.338 hybrid contribution -0.266 2.591 0.067 2.605 sum 4.132 -10.904 -1.965 11.825 Atomic orbital electron populations 1.69870 1.07115 1.27126 1.55077 1.26035 0.95662 1.00860 0.98903 0.85804 0.79327 0.80535 0.76600 1.21973 1.24591 1.17583 1.18761 0.82289 0.93031 1.42779 0.90358 1.44838 1.03401 1.46469 1.39775 1.22063 0.93475 0.93785 0.92712 1.22750 0.94784 0.97603 1.01285 1.22519 0.94990 0.96251 1.01221 1.21483 0.89897 0.88513 0.96644 0.92937 1.21825 0.84066 0.97159 0.97255 1.46341 1.21445 1.14943 1.53492 1.20768 0.87555 0.81631 0.80140 1.90651 1.65059 1.49125 1.41746 1.20725 0.94273 0.94753 1.04556 1.19281 0.97463 0.95285 0.93351 1.21148 0.98970 0.92251 1.00481 1.21237 0.95944 0.97232 0.96446 1.21038 0.99906 0.98626 0.93470 1.19242 0.97449 0.92185 0.93203 1.68067 1.13152 1.36428 1.02901 1.23495 0.94232 0.88116 0.98692 1.22191 1.00215 0.99292 0.98125 1.21681 0.94950 0.99047 0.94195 1.18854 1.01120 0.94544 0.96250 0.93038 0.96043 0.95582 0.91584 0.88510 0.88134 0.90219 0.91064 0.94264 0.74807 0.88016 0.84719 0.83074 0.81581 0.83339 0.78994 0.82461 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.05 13.97 21.65 0.30 -54.74 16 2 C -0.02 -0.96 5.48 84.86 0.46 -0.50 16 3 Si 0.95 44.41 24.76 68.60 1.70 46.11 16 4 H -0.29 -13.67 6.86 99.48 0.68 -12.99 16 5 H -0.32 -15.32 7.11 99.48 0.71 -14.62 16 6 H -0.25 -10.98 6.76 99.48 0.67 -10.30 16 7 C -0.24 -12.01 9.42 84.03 0.79 -11.22 16 8 H 0.08 4.04 5.44 -2.91 -0.02 4.02 16 9 N -0.62 -26.24 2.65 -668.23 -1.77 -28.01 16 10 C 0.10 4.05 6.14 86.86 0.53 4.58 16 11 C -0.13 -3.61 7.09 31.99 0.23 -3.38 16 12 C -0.11 -2.87 6.48 31.79 0.21 -2.66 16 13 C 0.14 4.70 3.34 45.34 0.15 4.86 16 14 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 15 C 0.12 4.14 5.19 86.38 0.45 4.59 16 16 N -0.71 -24.76 4.36 -463.06 -2.02 -26.78 16 17 C 0.51 18.01 7.82 87.66 0.69 18.69 16 18 O -0.58 -24.42 16.02 -3.04 -0.05 -24.47 16 19 C -0.10 -2.98 5.25 29.10 0.15 -2.83 16 20 C -0.05 -1.55 4.38 -19.82 -0.09 -1.64 16 21 C -0.11 -2.65 9.58 22.05 0.21 -2.44 16 22 C -0.09 -1.89 9.94 22.03 0.22 -1.67 16 23 C -0.11 -2.83 9.98 22.34 0.22 -2.61 16 24 C 0.10 3.13 6.60 40.29 0.27 3.39 16 25 N -0.50 -15.03 10.34 -188.62 -1.95 -16.98 16 26 C 0.13 3.26 11.15 85.07 0.95 4.21 16 27 C -0.18 -4.91 10.03 22.15 0.22 -4.69 16 28 C -0.07 -2.37 9.36 22.50 0.21 -2.16 16 29 C -0.11 -3.46 5.74 -21.28 -0.12 -3.58 16 30 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 31 H 0.02 0.93 3.20 -2.39 -0.01 0.92 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 1.91 7.85 -2.39 -0.02 1.89 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 39 H 0.41 14.74 6.07 -92.70 -0.56 14.18 16 40 H 0.10 3.08 6.73 -2.39 -0.02 3.06 16 41 H 0.13 2.95 8.04 -2.39 -0.02 2.93 16 42 H 0.15 2.72 8.05 -2.91 -0.02 2.70 16 43 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 45 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 47 H 0.13 4.32 6.57 -2.91 -0.02 4.30 16 Total: -1.00 -71.89 375.05 2.34 -69.54 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.38 Total: 34.39 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.75 Total: 0.95 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -5.44 Total: -126.52 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.70 Total: 46.11 kcal Total: -71.89 2.34 -69.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317501140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.088 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds