Wall clock time and date at job start Sat Apr 11 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47166 * 239.99774 * 3 2 1 5 5 H 1.48493 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47135 * 120.00089 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 13 13 H 1.08994 * 110.71922 * 276.96131 * 12 11 10 14 14 C 1.53003 * 110.72254 * 153.86462 * 12 11 10 15 15 N 1.46494 * 109.47093 * 174.99951 * 14 12 11 16 16 C 1.34776 * 119.99924 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00227 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00539 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47478 * 180.02562 * 18 16 15 20 20 C 1.36103 * 120.12122 * 264.72299 * 19 18 16 21 21 C 1.39321 * 121.06494 * 179.68371 * 20 19 18 22 22 C 1.36179 * 120.86420 * 0.64306 * 21 20 19 23 23 C 1.40382 * 119.61256 * 359.66328 * 22 21 20 24 24 C 1.40781 * 121.37580 * 180.02562 * 23 22 21 25 25 C 1.36575 * 118.14843 * 179.97438 * 24 23 22 26 26 C 1.39330 * 119.93965 * 359.97438 * 25 24 23 27 27 N 1.31079 * 121.75744 * 359.97438 * 26 25 24 28 28 C 1.33692 * 121.31884 * 0.02562 * 27 26 25 29 29 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 32 32 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 33 33 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 34 34 H 1.09000 * 111.00857 * 204.82205 * 11 10 9 35 35 H 1.09000 * 109.46700 * 294.99905 * 14 12 11 36 36 H 1.09004 * 109.46934 * 55.00029 * 14 12 11 37 37 H 0.96994 * 120.00707 * 0.02562 * 15 14 12 38 38 H 1.09004 * 109.46702 * 300.00679 * 18 16 15 39 39 H 1.09003 * 109.46895 * 59.99543 * 18 16 15 40 40 H 1.08001 * 119.47169 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.56874 * 180.31069 * 21 20 19 42 42 H 1.08002 * 120.18698 * 179.68499 * 22 21 20 43 43 H 1.07998 * 120.92267 * 0.02562 * 24 23 22 44 44 H 1.08001 * 120.02888 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.12258 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.85762 * 59.49821 * 29 9 7 47 47 H 1.08995 * 110.00297 * 298.42768 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 6 0.7740 -4.7541 0.0247 13 1 0.5403 -5.1019 -0.9815 14 6 1.1159 -5.9337 0.9372 15 7 2.1484 -6.7578 0.3039 16 6 2.6087 -7.8594 0.9291 17 8 2.1686 -8.1684 2.0162 18 6 3.6704 -8.7076 0.2775 19 6 4.0063 -9.8700 1.1758 20 6 5.0627 -9.7900 2.0301 21 6 5.3869 -10.8502 2.8739 22 6 4.6619 -12.0029 2.8575 23 6 3.5692 -12.1228 1.9845 24 6 2.7941 -13.2970 1.9373 25 6 1.7454 -13.3422 1.0635 26 6 1.4691 -12.2442 0.2515 27 7 2.1922 -11.1519 0.2987 28 6 3.2323 -11.0424 1.1315 29 6 1.9294 -3.7314 -0.0017 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5266 -2.4860 -1.0215 32 1 -0.5999 -1.7581 0.6114 33 1 -0.3558 -3.8977 1.6973 34 1 -1.3630 -4.3301 0.2754 35 1 1.4849 -5.5593 1.8920 36 1 0.2223 -6.5353 1.1036 37 1 2.5007 -6.5107 -0.5654 38 1 3.3011 -9.0816 -0.6775 39 1 4.5642 -8.1064 0.1110 40 1 5.6561 -8.8880 2.0584 41 1 6.2273 -10.7587 3.5459 42 1 4.9260 -12.8198 3.5128 43 1 3.0219 -14.1384 2.5749 44 1 1.1310 -14.2282 1.0019 45 1 0.6364 -12.2940 -0.4344 46 1 2.5552 -3.8562 0.8821 47 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317526293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:24 Heat of formation + Delta-G solvation = 39.713562 kcal Electronic energy + Delta-G solvation = -28030.236880 eV Core-core repulsion = 24178.191218 eV Total energy + Delta-G solvation = -3852.045662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17240 -39.50507 -37.69512 -37.25172 -34.61681 -34.23961 -32.50828 -31.59534 -30.78173 -29.83900 -28.54995 -27.43022 -25.38074 -24.43897 -23.83448 -23.44360 -21.60549 -20.51858 -19.89123 -19.48631 -18.52945 -17.24805 -17.12636 -17.00488 -16.63576 -15.92006 -15.40247 -15.01527 -14.79423 -14.59637 -14.53834 -14.21662 -14.12619 -13.70022 -13.35871 -13.32436 -13.16237 -12.90974 -12.46877 -12.05574 -11.96411 -11.90070 -11.72363 -11.62911 -11.48967 -11.42333 -10.94082 -10.77800 -10.73157 -10.37013 -10.13591 -9.99193 -9.86172 -9.71616 -9.66764 -9.46163 -8.99691 -8.85018 -8.63384 -8.40009 -6.81876 -5.63706 -3.05458 0.13929 0.60267 1.73389 2.68480 2.81520 3.37295 3.41304 3.45256 3.46794 3.90604 4.07537 4.23258 4.45343 4.49817 4.52187 4.63336 4.77465 4.89955 4.95654 5.07833 5.09998 5.18576 5.23167 5.31305 5.36825 5.43947 5.54980 5.55495 5.71974 5.74358 5.77639 5.82729 5.93458 6.12809 6.14475 6.16645 6.19509 6.27091 6.37891 6.53263 6.59255 6.62015 6.62429 6.77235 6.94389 7.53346 7.63471 7.65969 7.70749 7.87502 8.38147 8.38843 9.23563 9.84414 10.50013 11.40079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.001998 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.606841 B =14011.478492 C =14806.297337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.726 5.726 16 C 0.520 3.480 17 O -0.540 6.540 18 C -0.099 4.099 19 C -0.034 4.034 20 C -0.094 4.094 21 C -0.109 4.109 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.059 4.059 25 C -0.178 4.178 26 C 0.129 3.871 27 N -0.467 5.467 28 C 0.142 3.858 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.012 0.988 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.401 0.599 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.158 0.842 46 H 0.024 0.976 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -28.363 1.489 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.378 5.378 16 C 0.306 3.694 17 O -0.416 6.416 18 C -0.139 4.139 19 C -0.036 4.036 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.104 4.104 24 C -0.085 4.085 25 C -0.198 4.198 26 C -0.044 4.044 27 N -0.174 5.174 28 C 0.021 3.979 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.175 0.825 46 H 0.042 0.958 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.756 -27.542 1.768 28.414 hybrid contribution 0.752 0.185 0.065 0.777 sum 7.508 -27.357 1.834 28.428 Atomic orbital electron populations 1.69789 1.04881 1.24859 1.57617 1.24795 0.95749 0.97731 1.02513 0.86143 0.78386 0.83035 0.77869 1.21245 1.21571 1.21167 1.19026 0.90453 0.82495 1.43076 0.90601 1.44561 1.01994 0.99697 1.86863 1.21931 0.84692 0.92554 0.98171 1.23004 0.95583 0.98585 1.00295 1.22433 0.98221 0.94001 0.98639 0.90583 1.21420 0.90204 0.90906 0.96391 1.46049 1.42020 1.26503 1.23217 1.20305 0.82801 0.80687 0.85580 1.90701 1.59177 1.70779 1.20993 1.20569 0.99138 0.94358 0.99795 1.18948 0.94338 0.92881 0.97385 1.20813 0.96916 0.98964 0.94667 1.20886 0.99906 0.93190 0.98737 1.20950 0.94525 0.98493 0.98144 1.18801 0.97792 0.95171 0.98633 1.21447 0.93690 0.96541 0.96818 1.21873 0.99130 1.00621 0.98149 1.22958 0.97180 0.88075 0.96168 1.67985 1.04608 1.24773 1.20075 1.18604 0.93048 0.93193 0.93100 1.21375 0.93477 0.85908 0.97693 0.93688 0.97045 0.87541 0.91897 0.92161 0.91423 0.91863 0.76536 0.87077 0.87970 0.85186 0.85370 0.85347 0.84541 0.84636 0.82500 0.95814 0.96372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.09 55.49 0.56 -26.55 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.92 22.21 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.62 3.40 -169.86 -0.58 -16.20 16 10 C 0.15 3.70 5.89 -2.53 -0.01 3.68 16 11 C -0.14 -2.57 6.53 -24.58 -0.16 -2.74 16 12 C -0.11 -1.94 2.96 -88.78 -0.26 -2.20 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 2.09 5.02 -4.04 -0.02 2.07 16 15 N -0.73 -9.77 5.47 -60.29 -0.33 -10.10 16 16 C 0.52 7.49 7.82 -10.98 -0.09 7.40 16 17 O -0.54 -9.98 16.03 5.55 0.09 -9.90 16 18 C -0.10 -1.08 5.56 -29.03 -0.16 -1.24 16 19 C -0.03 -0.41 4.38 -104.52 -0.46 -0.87 16 20 C -0.09 -0.96 9.56 -39.95 -0.38 -1.34 16 21 C -0.11 -0.96 9.96 -39.92 -0.40 -1.36 16 22 C -0.10 -0.90 9.77 -39.52 -0.39 -1.29 16 23 C -0.10 -1.09 5.74 -106.80 -0.61 -1.70 16 24 C -0.06 -0.48 9.90 -39.22 -0.39 -0.87 16 25 C -0.18 -1.36 10.03 -39.78 -0.40 -1.76 16 26 C 0.13 1.23 11.14 -17.47 -0.19 1.03 16 27 N -0.47 -5.86 9.51 -10.98 -0.10 -5.96 16 28 C 0.14 1.80 6.58 -84.86 -0.56 1.24 16 29 C 0.14 2.91 6.77 -2.92 -0.02 2.89 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.11 2.93 5.86 -51.93 -0.30 2.63 16 33 H 0.06 1.20 8.05 -51.92 -0.42 0.78 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 38 H 0.11 1.12 7.71 -51.93 -0.40 0.72 16 39 H 0.10 0.83 8.04 -51.93 -0.42 0.41 16 40 H 0.13 1.07 8.04 -52.49 -0.42 0.65 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.02 0.50 7.68 -51.93 -0.40 0.10 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -35.71 387.69 -11.19 -46.90 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.89 Total: 2.68 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -4.75 Total: -3.90 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.45 Total: -58.81 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.71 -11.19 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317526293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.615 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds