Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47189 * 240.00247 * 3 2 1 5 5 H 1.48504 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 119.99940 * 3 2 1 7 7 C 1.38805 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00336 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47059 * 185.01800 * 10 9 7 12 12 H 1.08990 * 109.87067 * 306.24701 * 11 10 9 13 13 C 1.54319 * 109.88340 * 67.42491 * 11 10 9 14 14 C 1.55154 * 102.94588 * 141.60841 * 13 11 10 15 15 C 1.54916 * 101.58103 * 324.49874 * 14 13 11 16 16 N 1.47023 * 109.87982 * 185.23358 * 11 10 9 17 17 C 1.34776 * 125.65007 * 61.60559 * 16 11 10 18 18 O 1.21273 * 119.99717 * 355.09130 * 17 16 11 19 19 C 1.50697 * 119.99987 * 175.09277 * 17 16 11 20 20 C 1.50697 * 109.47198 * 179.97438 * 19 17 16 21 21 C 1.36255 * 120.25954 * 264.72391 * 20 19 17 22 22 C 1.39330 * 121.02053 * 179.77151 * 21 20 19 23 23 C 1.36208 * 121.08187 * 0.48541 * 22 21 20 24 24 C 1.40332 * 119.51827 * 359.77400 * 23 22 21 25 25 C 1.40441 * 122.08172 * 180.02562 * 24 23 22 26 26 N 1.31235 * 119.87950 * 179.97438 * 25 24 23 27 27 C 1.32611 * 122.78339 * 359.97438 * 26 25 24 28 28 C 1.36166 * 121.88244 * 0.02562 * 27 26 25 29 29 C 1.40190 * 120.25777 * 84.99673 * 20 19 17 30 30 H 0.97000 * 119.99848 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99326 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.47200 * 65.01237 * 10 9 7 33 33 H 1.09006 * 109.47218 * 305.01470 * 10 9 7 34 34 H 1.09010 * 110.72405 * 23.24448 * 13 11 10 35 35 H 1.09004 * 110.71992 * 259.97321 * 13 11 10 36 36 H 1.08989 * 111.00774 * 206.42445 * 14 13 11 37 37 H 1.08998 * 111.00412 * 82.56809 * 14 13 11 38 38 H 1.08997 * 110.36533 * 155.84506 * 15 14 13 39 39 H 1.09000 * 110.36128 * 278.06221 * 15 14 13 40 40 H 1.09003 * 109.47203 * 300.00180 * 19 17 16 41 41 H 1.09001 * 109.47435 * 59.99858 * 19 17 16 42 42 H 1.07996 * 119.48713 * 359.97438 * 21 20 19 43 43 H 1.07994 * 119.46202 * 180.26144 * 22 21 20 44 44 H 1.08001 * 120.24088 * 179.79773 * 23 22 21 45 45 H 1.08005 * 120.05746 * 359.94980 * 25 24 23 46 46 H 1.07998 * 119.05961 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.66857 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0686 -4.8170 -0.1267 12 1 0.3065 -4.7398 0.6485 13 6 0.4079 -4.7940 -1.5211 14 6 0.3130 -6.2991 -1.8856 15 6 1.6152 -6.8542 -1.2564 16 7 1.7808 -6.0972 -0.0022 17 6 2.4712 -6.5100 1.0792 18 8 2.6170 -5.7661 2.0258 19 6 3.0621 -7.8959 1.1119 20 6 3.7784 -8.1058 2.4210 21 6 5.1209 -7.8912 2.5112 22 6 5.7984 -8.0758 3.7146 23 6 5.1418 -8.4858 4.8354 24 6 3.7597 -8.7220 4.7796 25 6 3.0294 -9.1453 5.9021 26 7 1.7375 -9.3529 5.8013 27 6 1.0686 -9.1799 4.6694 28 6 1.6841 -8.7717 3.5254 29 6 3.0697 -8.5290 3.5541 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6157 -3.7544 0.9309 33 1 2.7505 -3.6766 -0.8422 34 1 1.0356 -4.2627 -2.2367 35 1 -0.5846 -4.3461 -1.4702 36 1 0.3105 -6.4399 -2.9664 37 1 -0.5661 -6.7564 -1.4315 38 1 1.5111 -7.9186 -1.0461 39 1 2.4616 -6.6804 -1.9209 40 1 2.2654 -8.6330 1.0109 41 1 3.7683 -8.0094 0.2894 42 1 5.6678 -7.5698 1.6371 43 1 6.8620 -7.8943 3.7587 44 1 5.6810 -8.6278 5.7604 45 1 3.5302 -9.3001 6.8464 46 1 0.0052 -9.3680 4.6544 47 1 1.1201 -8.6366 2.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319085853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = 35.560867 kcal Electronic energy + Delta-G solvation = -28924.363336 eV Core-core repulsion = 25072.137599 eV Total energy + Delta-G solvation = -3852.225736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16419 -39.97646 -37.88648 -37.11444 -34.52539 -33.99092 -31.90731 -31.41404 -31.29541 -30.58289 -28.85126 -27.62646 -25.07285 -24.36910 -23.75908 -23.28510 -22.05277 -21.59725 -20.43418 -18.88327 -18.21077 -17.34659 -17.21995 -16.95412 -16.67543 -16.24413 -15.39597 -14.90134 -14.57249 -14.50578 -14.43900 -14.24313 -13.92936 -13.72989 -13.55831 -13.31724 -13.18649 -12.84029 -12.79154 -12.71201 -12.28804 -12.23696 -12.03227 -11.84206 -11.45066 -11.28145 -11.10241 -10.90379 -10.80653 -10.55638 -10.45371 -10.29496 -10.05758 -9.76641 -9.64632 -9.58407 -9.19582 -8.79644 -8.45832 -8.17691 -6.85932 -5.71737 -2.99743 0.18331 0.76941 1.73099 2.73354 2.82364 3.12064 3.47641 3.51681 3.53266 3.91831 4.17093 4.29200 4.46830 4.51082 4.56947 4.59988 4.65964 4.69966 4.81862 4.87919 4.95751 5.03312 5.06340 5.14784 5.20119 5.35879 5.38670 5.47299 5.55961 5.60651 5.61457 5.62049 5.79394 5.83002 5.86850 5.90098 6.04862 6.08580 6.18279 6.19194 6.29825 6.41752 6.45860 6.55769 6.65808 6.82898 7.05293 7.65421 7.74935 7.81876 8.30864 8.47507 9.58093 10.15083 10.50616 11.51341 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.002860 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.171955 B = 9787.825568 C =10680.287233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.728 5.728 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.524 3.476 18 O -0.515 6.515 19 C -0.100 4.100 20 C -0.055 4.055 21 C -0.086 4.086 22 C -0.114 4.114 23 C -0.090 4.090 24 C -0.111 4.111 25 C 0.144 3.856 26 N -0.490 5.490 27 C 0.075 3.925 28 C -0.149 4.149 29 C -0.006 4.006 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.162 0.838 46 H 0.152 0.848 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -25.498 1.394 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.028 3.972 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.024 4.024 16 N -0.349 5.349 17 C 0.311 3.689 18 O -0.390 6.390 19 C -0.139 4.139 20 C -0.056 4.056 21 C -0.105 4.105 22 C -0.132 4.132 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.027 4.027 26 N -0.198 5.198 27 C -0.068 4.068 28 C -0.168 4.168 29 C -0.011 4.011 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.309 -25.273 2.638 26.182 hybrid contribution 0.606 1.369 -0.886 1.740 sum 6.915 -23.903 1.753 24.945 Atomic orbital electron populations 1.69648 1.05059 1.25675 1.58040 1.24712 0.95537 0.97585 1.03179 0.86257 0.78512 0.83536 0.77841 1.21321 1.21674 1.21287 1.19164 0.90963 0.84062 1.42383 0.91381 1.42192 1.05710 0.99731 1.89661 1.20975 0.93366 0.85098 0.98814 1.21819 0.94515 0.83180 0.97651 0.90754 1.22663 1.02123 0.95196 0.95806 1.22799 0.96811 0.96742 1.00926 1.22336 0.98492 0.95772 0.85847 1.48555 1.52529 1.19512 1.14346 1.20012 0.78544 0.88552 0.81758 1.90798 1.57502 1.55625 1.35044 1.20671 1.01184 0.95756 0.96331 1.19035 0.93695 0.99356 0.93481 1.20851 0.93802 0.97441 0.98413 1.20877 1.00417 0.99273 0.92633 1.20957 0.92600 0.98438 0.98962 1.18994 0.95208 1.02621 0.94530 1.23174 0.89643 0.92819 0.97101 1.67399 1.09559 1.15131 1.27735 1.22132 1.00169 0.96596 0.87915 1.21866 0.93984 1.00574 1.00408 1.17920 0.93528 0.96738 0.92961 0.93527 0.78379 0.94786 0.96336 0.89909 0.89799 0.89983 0.90815 0.90956 0.91262 0.88001 0.87759 0.85550 0.85418 0.84955 0.82072 0.83101 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.86 13.06 55.49 0.72 -28.14 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.31 5.42 -59.91 -0.32 -19.64 16 10 C 0.15 3.22 5.66 -4.04 -0.02 3.20 16 11 C 0.13 2.27 2.95 -66.95 -0.20 2.07 16 12 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.71 6.24 -24.90 -0.16 -1.87 16 14 C -0.13 -1.31 7.09 -24.58 -0.17 -1.49 16 15 C 0.10 0.94 6.74 -2.52 -0.02 0.93 16 16 N -0.61 -8.58 3.07 -163.02 -0.50 -9.08 16 17 C 0.52 7.80 7.66 -10.99 -0.08 7.72 16 18 O -0.52 -10.33 14.82 5.56 0.08 -10.25 16 19 C -0.10 -1.01 4.21 -29.04 -0.12 -1.13 16 20 C -0.06 -0.65 4.38 -104.60 -0.46 -1.11 16 21 C -0.09 -0.91 9.58 -39.89 -0.38 -1.29 16 22 C -0.11 -1.08 9.94 -39.91 -0.40 -1.47 16 23 C -0.09 -0.85 9.81 -39.52 -0.39 -1.24 16 24 C -0.11 -1.30 5.74 -106.86 -0.61 -1.91 16 25 C 0.14 1.58 11.05 -16.98 -0.19 1.39 16 26 N -0.49 -6.16 10.30 -13.15 -0.14 -6.29 16 27 C 0.07 0.87 11.07 -17.96 -0.20 0.68 16 28 C -0.15 -1.76 9.36 -39.40 -0.37 -2.13 16 29 C -0.01 -0.08 5.75 -106.81 -0.61 -0.69 16 30 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.38 10.46 7.61 -40.82 -0.31 10.15 16 32 H 0.03 0.85 6.55 -51.93 -0.34 0.51 16 33 H 0.02 0.41 8.02 -51.93 -0.42 0.00 16 34 H 0.08 1.28 7.76 -51.92 -0.40 0.88 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 0.65 8.14 -51.94 -0.42 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.80 6.61 -51.93 -0.34 0.46 16 41 H 0.10 0.79 8.04 -51.93 -0.42 0.38 16 42 H 0.13 1.11 8.05 -52.49 -0.42 0.68 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 46 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.13 1.35 6.65 -52.49 -0.35 1.00 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -37.14 386.07 -10.73 -47.87 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.74 Total: 7.52 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -4.63 Total: -5.89 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.24 Total: -63.15 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.14 -10.73 -47.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319085853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.430 kcal (2) G-P(sol) polarization free energy of solvation -37.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds