Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47189 * 240.00247 * 3 2 1 5 5 H 1.48504 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 119.99940 * 3 2 1 7 7 C 1.38805 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00336 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47059 * 185.01800 * 10 9 7 12 12 H 1.08990 * 109.87067 * 306.24701 * 11 10 9 13 13 C 1.54319 * 109.88340 * 67.42491 * 11 10 9 14 14 C 1.55154 * 102.94588 * 141.60841 * 13 11 10 15 15 C 1.54916 * 101.58103 * 324.49874 * 14 13 11 16 16 N 1.47023 * 109.87982 * 185.23358 * 11 10 9 17 17 C 1.34776 * 125.65007 * 61.60559 * 16 11 10 18 18 O 1.21273 * 119.99717 * 355.09130 * 17 16 11 19 19 C 1.50697 * 119.99987 * 175.09277 * 17 16 11 20 20 C 1.50697 * 109.47198 * 179.97438 * 19 17 16 21 21 C 1.36255 * 120.25954 * 264.72391 * 20 19 17 22 22 C 1.39330 * 121.02053 * 179.77151 * 21 20 19 23 23 C 1.36208 * 121.08187 * 0.48541 * 22 21 20 24 24 C 1.40332 * 119.51827 * 359.77400 * 23 22 21 25 25 C 1.40441 * 122.08172 * 180.02562 * 24 23 22 26 26 N 1.31235 * 119.87950 * 179.97438 * 25 24 23 27 27 C 1.32611 * 122.78339 * 359.97438 * 26 25 24 28 28 C 1.36166 * 121.88244 * 0.02562 * 27 26 25 29 29 C 1.40190 * 120.25777 * 84.99673 * 20 19 17 30 30 H 0.97000 * 119.99848 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99326 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.47200 * 65.01237 * 10 9 7 33 33 H 1.09006 * 109.47218 * 305.01470 * 10 9 7 34 34 H 1.09010 * 110.72405 * 23.24448 * 13 11 10 35 35 H 1.09004 * 110.71992 * 259.97321 * 13 11 10 36 36 H 1.08989 * 111.00774 * 206.42445 * 14 13 11 37 37 H 1.08998 * 111.00412 * 82.56809 * 14 13 11 38 38 H 1.08997 * 110.36533 * 155.84506 * 15 14 13 39 39 H 1.09000 * 110.36128 * 278.06221 * 15 14 13 40 40 H 1.09003 * 109.47203 * 300.00180 * 19 17 16 41 41 H 1.09001 * 109.47435 * 59.99858 * 19 17 16 42 42 H 1.07996 * 119.48713 * 359.97438 * 21 20 19 43 43 H 1.07994 * 119.46202 * 180.26144 * 22 21 20 44 44 H 1.08001 * 120.24088 * 179.79773 * 23 22 21 45 45 H 1.08005 * 120.05746 * 359.94980 * 25 24 23 46 46 H 1.07998 * 119.05961 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.66857 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0686 -4.8170 -0.1267 12 1 0.3065 -4.7398 0.6485 13 6 0.4079 -4.7940 -1.5211 14 6 0.3130 -6.2991 -1.8856 15 6 1.6152 -6.8542 -1.2564 16 7 1.7808 -6.0972 -0.0022 17 6 2.4712 -6.5100 1.0792 18 8 2.6170 -5.7661 2.0258 19 6 3.0621 -7.8959 1.1119 20 6 3.7784 -8.1058 2.4210 21 6 5.1209 -7.8912 2.5112 22 6 5.7984 -8.0758 3.7146 23 6 5.1418 -8.4858 4.8354 24 6 3.7597 -8.7220 4.7796 25 6 3.0294 -9.1453 5.9021 26 7 1.7375 -9.3529 5.8013 27 6 1.0686 -9.1799 4.6694 28 6 1.6841 -8.7717 3.5254 29 6 3.0697 -8.5290 3.5541 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6157 -3.7544 0.9309 33 1 2.7505 -3.6766 -0.8422 34 1 1.0356 -4.2627 -2.2367 35 1 -0.5846 -4.3461 -1.4702 36 1 0.3105 -6.4399 -2.9664 37 1 -0.5661 -6.7564 -1.4315 38 1 1.5111 -7.9186 -1.0461 39 1 2.4616 -6.6804 -1.9209 40 1 2.2654 -8.6330 1.0109 41 1 3.7683 -8.0094 0.2894 42 1 5.6678 -7.5698 1.6371 43 1 6.8620 -7.8943 3.7587 44 1 5.6810 -8.6278 5.7604 45 1 3.5302 -9.3001 6.8464 46 1 0.0052 -9.3680 4.6544 47 1 1.1201 -8.6366 2.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319085853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = 11.475009 kcal Electronic energy + Delta-G solvation = -28925.407777 eV Core-core repulsion = 25072.137599 eV Total energy + Delta-G solvation = -3853.270178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00196 -41.08537 -38.89889 -38.11694 -36.44411 -34.87612 -33.53812 -32.70247 -32.23773 -31.43613 -30.37244 -28.51693 -26.75300 -25.20941 -24.82341 -24.54615 -23.58769 -22.45729 -21.55790 -20.15868 -19.11657 -18.97385 -18.18456 -17.97196 -17.75461 -17.37180 -16.52104 -16.34438 -15.85592 -15.56905 -15.40665 -15.31047 -15.07503 -15.00852 -14.96876 -14.71011 -14.36087 -14.01190 -13.79435 -13.58139 -13.55818 -13.18112 -13.00284 -12.94145 -12.87018 -12.74292 -12.57376 -12.26213 -12.09698 -11.93875 -11.89426 -11.81010 -11.58985 -11.18416 -11.01091 -10.78583 -10.49302 -10.00818 -9.66576 -9.06859 -8.97158 -8.00354 -5.30431 -0.60615 -0.05227 0.91590 1.42289 1.46793 1.52840 1.62495 1.90540 2.17590 2.52970 3.08841 3.31938 3.40367 3.51886 3.55002 3.66174 3.72320 3.84642 3.91568 3.94095 3.97790 4.05863 4.13040 4.23321 4.29831 4.33644 4.35992 4.41065 4.48237 4.53545 4.70039 4.75871 4.82148 4.83632 4.86665 4.95393 5.04346 5.08464 5.11737 5.13795 5.15643 5.35159 5.40048 5.44213 5.47600 5.51031 5.67336 5.92106 6.20960 6.58339 6.98379 7.19083 7.27311 7.99125 8.26218 9.22775 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.002860 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.171955 B = 9787.825568 C =10680.287233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.737 5.737 10 C 0.153 3.847 11 C 0.138 3.862 12 H 0.046 0.954 13 C -0.118 4.118 14 C -0.120 4.120 15 C 0.093 3.907 16 N -0.612 5.612 17 C 0.518 3.482 18 O -0.579 6.579 19 C -0.086 4.086 20 C -0.079 4.079 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.134 4.134 25 C 0.142 3.858 26 N -0.516 5.516 27 C 0.060 3.940 28 C -0.161 4.161 29 C -0.030 4.030 30 H 0.254 0.746 31 H 0.375 0.625 32 H 0.001 0.999 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.192 0.808 46 H 0.167 0.833 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -27.276 0.121 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.380 5.380 10 C 0.026 3.974 11 C 0.034 3.966 12 H 0.064 0.936 13 C -0.156 4.156 14 C -0.157 4.157 15 C -0.028 4.028 16 N -0.346 5.346 17 C 0.308 3.692 18 O -0.458 6.458 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.112 4.112 22 C -0.141 4.141 23 C -0.109 4.109 24 C -0.136 4.136 25 C -0.029 4.029 26 N -0.225 5.225 27 C -0.082 4.082 28 C -0.181 4.181 29 C -0.035 4.035 30 H 0.063 0.937 31 H 0.207 0.793 32 H 0.019 0.981 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.173 0.827 44 H 0.181 0.819 45 H 0.209 0.791 46 H 0.184 0.816 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.802 -27.109 1.320 28.240 hybrid contribution 0.210 1.923 -0.440 1.984 sum 8.011 -25.186 0.880 26.444 Atomic orbital electron populations 1.69805 1.06519 1.26381 1.58939 1.25582 0.96514 1.01057 1.03126 0.85178 0.77295 0.78877 0.78194 1.19851 1.21457 1.20913 1.19518 0.91214 0.85437 1.42258 0.91490 1.42330 1.05473 1.00741 1.89493 1.20953 0.94117 0.85468 0.96877 1.21499 0.92933 0.83388 0.98801 0.93585 1.22564 1.00707 0.98957 0.93383 1.22817 0.97524 0.92469 1.02926 1.22717 0.98854 0.97426 0.83776 1.48675 1.51640 1.18401 1.15926 1.20952 0.77607 0.89863 0.80745 1.90769 1.59870 1.57739 1.37384 1.20693 1.02349 0.92615 0.96854 1.19264 0.94358 1.00313 0.93987 1.21232 0.93804 0.96569 0.99609 1.21269 1.01850 0.98735 0.92230 1.21353 0.91871 0.97266 1.00369 1.19336 0.96430 1.03230 0.94573 1.23707 0.89343 0.91695 0.98183 1.67435 1.10467 1.16370 1.28214 1.22456 1.01088 0.96716 0.87963 1.22030 0.94164 1.00966 1.00936 1.18269 0.94089 0.97235 0.93915 0.93732 0.79280 0.98099 0.96169 0.91234 0.90871 0.87040 0.89680 0.86767 0.89780 0.85322 0.84516 0.83954 0.82735 0.81878 0.79110 0.81557 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.98 47.96 29.55 68.60 2.03 49.98 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.25 -15.19 9.99 84.03 0.84 -14.35 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -40.81 5.42 -343.46 -1.86 -42.67 16 10 C 0.15 7.11 5.66 86.38 0.49 7.60 16 11 C 0.14 4.91 2.95 45.34 0.13 5.05 16 12 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.12 -3.33 6.24 31.78 0.20 -3.14 16 14 C -0.12 -1.96 7.09 31.99 0.23 -1.73 16 15 C 0.09 1.44 6.74 86.86 0.59 2.03 16 16 N -0.61 -16.54 3.07 -788.05 -2.42 -18.96 16 17 C 0.52 15.24 7.66 87.66 0.67 15.91 16 18 O -0.58 -24.21 14.82 -3.01 -0.04 -24.26 16 19 C -0.09 -1.56 4.21 29.10 0.12 -1.44 16 20 C -0.08 -1.77 4.38 -19.85 -0.09 -1.86 16 21 C -0.09 -1.84 9.58 22.07 0.21 -1.63 16 22 C -0.12 -2.11 9.94 22.06 0.22 -1.89 16 23 C -0.09 -1.55 9.81 22.31 0.22 -1.33 16 24 C -0.13 -3.04 5.74 -21.31 -0.12 -3.16 16 25 C 0.14 3.04 11.05 85.32 0.94 3.98 16 26 N -0.52 -13.04 10.30 -195.53 -2.01 -15.05 16 27 C 0.06 1.43 11.07 84.09 0.93 2.36 16 28 C -0.16 -3.84 9.36 22.39 0.21 -3.63 16 29 C -0.03 -0.75 5.75 -21.28 -0.12 -0.87 16 30 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.38 21.55 7.61 -92.71 -0.71 20.84 16 32 H 0.00 0.06 6.55 -2.39 -0.02 0.04 16 33 H 0.02 0.93 8.02 -2.38 -0.02 0.91 16 34 H 0.07 2.15 7.76 -2.38 -0.02 2.13 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 0.91 7.47 -2.39 -0.02 0.89 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.13 1.61 6.61 -2.39 -0.02 1.60 16 41 H 0.14 1.56 8.04 -2.39 -0.02 1.54 16 42 H 0.14 2.21 8.05 -2.91 -0.02 2.18 16 43 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 47 H 0.14 2.87 6.65 -2.91 -0.02 2.85 16 Total: -1.00 -85.91 386.07 2.39 -83.52 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.28 Total: 29.90 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 6.13 Total: -1.85 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -6.01 Total: -137.29 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.04 Total: -24.26 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -85.91 2.39 -83.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319085853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.995 kcal (2) G-P(sol) polarization free energy of solvation -85.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds