Wall clock time and date at job start Sat Apr 11 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99929 * 2 1 4 4 O 1.20822 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99798 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47046 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47271 * 180.02562 * 6 5 3 8 8 H 1.09004 * 110.65667 * 303.54325 * 7 6 5 9 9 N 1.47310 * 110.59832 * 66.45499 * 7 6 5 10 10 C 1.34528 * 106.61668 * 118.52847 * 9 7 6 11 11 O 1.21543 * 123.76826 * 179.97438 * 10 9 7 12 12 N 1.33785 * 112.45997 * 359.97438 * 10 9 7 13 13 C 1.46502 * 124.17759 * 179.97438 * 12 10 9 14 14 C 1.53039 * 109.45819 * 60.02971 * 13 12 10 15 15 C 1.53192 * 109.31596 * 178.61544 * 14 13 12 16 16 N 1.46931 * 108.77565 * 54.62962 * 15 14 13 17 17 C 1.36933 * 120.63025 * 126.37324 * 16 15 14 18 18 H 1.08003 * 119.99756 * 332.13537 * 17 16 15 19 19 C 1.38810 * 119.99898 * 152.13970 * 17 16 15 20 20 N 1.31610 * 120.00090 * 342.99442 * 19 17 16 21 21 Si 1.86805 * 119.99845 * 162.99929 * 19 17 16 22 22 H 1.48502 * 109.46992 * 266.23159 * 21 19 17 23 23 H 1.48503 * 109.46878 * 146.23043 * 21 19 17 24 24 H 1.48501 * 109.47000 * 26.23150 * 21 19 17 25 25 C 1.46930 * 118.73686 * 306.64806 * 16 15 14 26 26 C 1.52764 * 109.00948 * 53.30825 * 25 16 15 27 27 C 1.34769 * 111.64419 * 0.23074 * 12 10 9 28 28 O 1.21238 * 127.15240 * 179.73283 * 27 12 10 29 29 H 1.09000 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47618 * 300.00138 * 1 2 3 31 31 H 1.09000 * 109.47029 * 60.00501 * 1 2 3 32 32 H 1.09001 * 109.46978 * 59.99867 * 5 3 2 33 33 H 1.09001 * 109.47275 * 299.99548 * 5 3 2 34 34 H 1.09006 * 109.46929 * 59.99813 * 6 5 3 35 35 H 1.09001 * 109.46993 * 300.00062 * 6 5 3 36 36 H 0.96998 * 126.68965 * 298.48703 * 9 7 6 37 37 H 1.09000 * 109.45886 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.50122 * 58.65953 * 14 13 12 39 39 H 1.09004 * 109.51973 * 298.57853 * 14 13 12 40 40 H 1.09001 * 109.58323 * 294.84684 * 15 14 13 41 41 H 1.08997 * 109.70591 * 174.48835 * 15 14 13 42 42 H 0.97003 * 120.00299 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.58125 * 173.14505 * 25 16 15 44 44 H 1.08997 * 109.58640 * 293.56844 * 25 16 15 45 45 H 1.09002 * 109.56068 * 185.55082 * 26 25 16 46 46 H 1.08997 * 109.38289 * 65.51695 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5279 2.8222 -0.0002 8 1 5.9415 2.2799 0.8502 9 7 6.0743 2.2986 -1.2641 10 6 6.7336 3.3151 -1.8486 11 8 7.3084 3.2229 -2.9156 12 7 6.6859 4.4389 -1.1243 13 6 7.3177 5.7003 -1.5196 14 6 6.7329 6.1669 -2.8546 15 6 7.3706 7.5032 -3.2478 16 7 8.8316 7.3473 -3.2504 17 6 9.5675 7.6874 -4.3540 18 1 9.1216 7.6383 -5.3365 19 6 10.8865 8.0950 -4.2100 20 7 11.3324 8.4768 -3.0320 21 14 12.0287 8.1019 -5.6882 22 1 12.7753 6.8193 -5.7427 23 1 12.9884 9.2286 -5.5669 24 1 11.2303 8.2631 -6.9298 25 6 9.4873 6.8140 -2.0486 26 6 8.8264 5.4906 -1.6670 27 6 5.9897 4.2658 0.0165 28 8 5.7762 5.0931 0.8767 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9563 0.7805 -0.8891 33 1 3.9557 0.7810 0.8909 34 1 3.6099 3.2368 0.8894 35 1 3.6107 3.2356 -0.8907 36 1 5.9780 1.3965 -1.6075 37 1 7.1287 6.4557 -0.7569 38 1 5.6548 6.2935 -2.7553 39 1 6.9425 5.4235 -3.6238 40 1 7.0862 8.2698 -2.5270 41 1 7.0322 7.7933 -4.2424 42 1 12.2541 8.7620 -2.9314 43 1 10.5449 6.6472 -2.2530 44 1 9.3790 7.5232 -1.2280 45 1 9.2385 5.1360 -0.7222 46 1 9.0169 4.7531 -2.4467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321951317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:35 Heat of formation + Delta-G solvation = -106.724100 kcal Electronic energy + Delta-G solvation = -30188.904026 eV Core-core repulsion = 25887.366336 eV Total energy + Delta-G solvation = -4301.537690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50589 -40.90138 -38.55772 -37.79835 -37.10180 -36.31082 -35.01900 -33.35584 -32.04043 -30.21664 -29.57617 -29.13418 -27.45099 -25.39519 -23.96656 -23.18222 -22.23544 -21.94687 -21.11657 -20.33634 -19.05585 -18.23264 -17.99402 -17.32190 -17.05822 -16.86439 -16.74045 -15.90276 -15.61468 -15.46140 -15.04312 -14.68865 -14.27063 -14.14901 -13.94682 -13.81073 -13.50789 -13.27885 -13.18201 -13.04852 -12.82884 -12.62694 -12.50497 -12.32157 -11.72116 -11.60651 -11.36985 -11.27795 -11.02492 -11.00057 -10.71797 -10.59600 -10.42022 -10.30679 -10.24024 -10.01101 -9.77610 -9.64892 -9.53405 -9.17076 -8.43250 -6.67046 -5.76390 -3.18322 1.57228 1.72310 2.14162 2.32682 3.00609 3.10412 3.41983 3.48688 3.50227 3.75579 4.07654 4.30616 4.32329 4.52971 4.59745 4.64366 4.71113 4.73826 4.87421 5.05975 5.08502 5.32259 5.38658 5.40305 5.45194 5.52377 5.60046 5.67783 5.75217 5.90399 6.09035 6.26275 6.41671 6.50443 6.63103 6.66919 6.68770 6.76162 6.97022 7.19452 7.25046 7.37653 7.39581 7.64766 7.83560 8.19852 8.47317 9.23298 9.86269 10.42410 11.32782 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.002295 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.872882 B =12198.225690 C =12377.308661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.460 3.540 4 O -0.502 6.502 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.094 3.906 8 H 0.128 0.872 9 N -0.734 5.734 10 C 0.700 3.300 11 O -0.524 6.524 12 N -0.568 5.568 13 C 0.156 3.844 14 C -0.145 4.145 15 C 0.151 3.849 16 N -0.590 5.590 17 C -0.249 4.249 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.176 3.824 26 C -0.152 4.152 27 C 0.523 3.477 28 O -0.468 6.468 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.436 0.564 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.060 0.940 42 H 0.254 0.746 43 H 0.093 0.907 44 H 0.021 0.979 45 H 0.050 0.950 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.172 -19.429 9.613 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.389 6.389 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.015 4.015 8 H 0.146 0.854 9 N -0.400 5.400 10 C 0.401 3.599 11 O -0.395 6.395 12 N -0.313 5.313 13 C 0.056 3.944 14 C -0.185 4.185 15 C 0.024 3.976 16 N -0.312 5.312 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.049 3.951 26 C -0.192 4.192 27 C 0.309 3.691 28 O -0.338 6.338 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.280 0.720 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.981 -18.503 9.496 27.492 hybrid contribution 0.309 -0.492 -0.725 0.929 sum -17.672 -18.994 8.771 27.386 Atomic orbital electron populations 1.23295 0.75984 1.03835 1.02754 1.86497 1.23743 1.33407 1.84134 1.23675 0.92099 0.81436 0.72492 1.90723 1.67205 1.36286 1.44662 1.21349 0.88004 0.99135 1.06432 1.21619 0.91484 0.95369 1.06334 1.22048 0.95863 0.93737 0.89872 0.85421 1.45639 1.57828 1.13737 1.22803 1.15953 0.79726 0.80522 0.83747 1.91052 1.46020 1.82493 1.19954 1.46910 1.49955 1.13495 1.20962 1.21498 0.94100 0.80576 0.98191 1.22460 0.98285 1.01516 0.96233 1.20843 0.85724 0.91963 0.99118 1.44051 1.00250 1.72888 1.14059 1.19200 0.94176 1.38391 0.86131 0.91574 1.25040 0.99116 0.98793 0.96731 1.70023 1.15818 1.46441 1.22531 0.86255 0.80822 0.77186 0.82392 1.21460 1.21825 1.20376 1.20670 0.98153 0.88247 0.88020 1.22588 0.92162 1.03385 1.01053 1.20682 0.77411 0.89522 0.81437 1.90810 1.55312 1.49266 1.38409 0.87972 0.91754 0.91749 0.87347 0.86783 0.88090 0.89449 0.72025 0.88353 0.93011 0.90155 0.96141 0.92109 0.93635 0.88865 0.96106 0.93133 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.49 10.57 -39.26 -0.41 -2.91 16 3 C 0.46 3.52 7.96 36.00 0.29 3.81 16 4 O -0.50 -5.57 15.73 -18.75 -0.29 -5.86 16 5 C -0.11 -0.49 5.72 -27.88 -0.16 -0.65 16 6 C -0.11 -0.75 4.28 -26.73 -0.11 -0.87 16 7 C 0.09 0.73 3.68 -68.21 -0.25 0.48 16 8 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 9 N -0.73 -6.34 5.97 -59.20 -0.35 -6.69 16 10 C 0.70 9.99 8.04 -88.02 -0.71 9.28 16 11 O -0.52 -9.61 14.91 5.33 0.08 -9.53 16 12 N -0.57 -8.50 2.51 -113.55 -0.28 -8.78 16 13 C 0.16 2.80 2.60 -67.89 -0.18 2.62 16 14 C -0.14 -2.70 5.33 -26.61 -0.14 -2.84 16 15 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 16 N -0.59 -15.05 3.00 -172.57 -0.52 -15.57 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 18 H 0.07 1.82 7.89 -52.48 -0.41 1.41 16 19 C 0.00 0.04 4.91 -17.44 -0.09 -0.04 16 20 N -0.90 -26.41 11.20 55.49 0.62 -25.78 16 21 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.18 4.25 5.28 -3.93 -0.02 4.23 16 26 C -0.15 -3.06 5.32 -26.83 -0.14 -3.20 16 27 C 0.52 6.74 7.66 -10.56 -0.08 6.66 16 28 O -0.47 -7.27 17.51 5.59 0.10 -7.17 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.11 0.30 7.43 -51.93 -0.39 -0.09 16 33 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.44 2.47 8.42 -40.82 -0.34 2.12 16 37 H 0.10 1.80 7.63 -51.93 -0.40 1.40 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.65 6.75 -51.93 -0.35 1.30 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.09 2.52 6.06 -51.93 -0.31 2.21 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.70 6.75 -51.93 -0.35 1.35 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -35.83 376.38 -7.87 -43.69 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.75 Total: -0.95 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -0.70 Total: 16.83 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.53 Total: -56.83 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.53 Total: -25.47 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.83 -7.87 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321951317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.030 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds