Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99656 * 2 1 4 4 H 1.48505 * 109.46590 * 90.00656 * 3 2 1 5 5 H 1.48495 * 109.47056 * 210.00239 * 3 2 1 6 6 H 1.48496 * 109.47294 * 330.00687 * 3 2 1 7 7 C 1.38813 * 120.00215 * 180.28470 * 2 1 3 8 8 H 1.07992 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99495 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47359 * 180.02562 * 11 10 9 13 13 H 1.08992 * 110.88881 * 305.69623 * 12 11 10 14 14 C 1.55161 * 111.00346 * 181.81615 * 12 11 10 15 15 C 1.54322 * 102.94174 * 206.42276 * 14 12 11 16 16 N 1.47020 * 107.27406 * 22.19922 * 15 14 12 17 17 C 1.34775 * 125.65081 * 181.09856 * 16 15 14 18 18 O 1.21608 * 119.99798 * 174.71779 * 17 16 15 19 19 C 1.47438 * 120.00043 * 354.71315 * 17 16 15 20 20 C 1.38948 * 121.17365 * 315.64966 * 19 17 16 21 21 N 1.32200 * 121.32208 * 180.02562 * 20 19 17 22 22 C 1.31199 * 123.69431 * 359.97438 * 21 20 19 23 23 C 1.40387 * 120.91276 * 359.97438 * 22 21 20 24 24 C 1.40393 * 122.14140 * 180.02562 * 23 22 21 25 25 C 1.36232 * 119.48852 * 179.97438 * 24 23 22 26 26 C 1.39293 * 121.10092 * 0.02562 * 25 24 23 27 27 C 1.36440 * 120.95074 * 359.97438 * 26 25 24 28 28 C 1.39694 * 119.43308 * 359.74671 * 27 26 25 29 29 C 1.47472 * 108.71855 * 1.02103 * 16 15 14 30 30 H 0.97001 * 120.00172 * 359.71857 * 1 2 3 31 31 H 0.96999 * 120.00333 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47614 * 300.00170 * 10 9 7 33 33 H 1.09003 * 109.47256 * 60.00084 * 10 9 7 34 34 H 1.09004 * 109.47141 * 300.00037 * 11 10 9 35 35 H 1.09003 * 109.47287 * 59.99731 * 11 10 9 36 36 H 1.08999 * 110.72602 * 324.78829 * 14 12 11 37 37 H 1.09000 * 110.71679 * 88.06392 * 14 12 11 38 38 H 1.09003 * 109.88103 * 141.61093 * 15 14 12 39 39 H 1.09001 * 109.88445 * 262.61975 * 15 14 12 40 40 H 1.08004 * 119.34301 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.54287 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.26085 * 359.95766 * 24 23 22 43 43 H 1.08001 * 119.44571 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.51971 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.28085 * 180.02562 * 27 26 25 46 46 H 1.09005 * 110.40415 * 217.08714 * 29 16 15 47 47 H 1.08998 * 110.34725 * 94.74800 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5477 1.4403 -0.7001 6 1 1.4475 2.6527 -0.6999 7 6 2.0104 -1.2021 -0.0060 8 1 3.0903 -1.2020 -0.0056 9 7 1.3256 -2.3880 -0.0113 10 6 2.0582 -3.6566 -0.0171 11 6 1.0641 -4.8196 -0.0230 12 6 1.8291 -6.1446 -0.0283 13 1 2.5386 -6.1803 -0.8549 14 6 0.8534 -7.3499 -0.0803 15 6 1.6638 -8.4797 0.5893 16 7 2.6918 -7.8430 1.4256 17 6 3.6184 -8.4899 2.1600 18 8 4.4824 -7.8606 2.7399 19 6 3.5846 -9.9605 2.2603 20 6 2.3916 -10.6393 2.4764 21 7 2.3579 -11.9578 2.5673 22 6 3.4194 -12.7218 2.4639 23 6 4.6896 -12.1659 2.2436 24 6 5.8423 -12.9589 2.1283 25 6 7.0481 -12.3623 1.9141 26 6 7.1570 -10.9777 1.8080 27 6 6.0574 -10.1770 1.9151 28 6 4.8045 -10.7566 2.1290 29 6 2.5426 -6.3792 1.3265 30 1 -0.4850 0.8400 0.0041 31 1 0.3556 -2.3881 -0.0113 32 1 2.6849 -3.7104 -0.9073 33 1 2.6849 -3.7184 0.8727 34 1 0.4370 -4.7661 0.8671 35 1 0.4377 -4.7577 -0.9129 36 1 -0.0529 -7.1373 0.4866 37 1 0.6129 -7.6071 -1.1119 38 1 1.0070 -9.0896 1.2095 39 1 2.1348 -9.1001 -0.1732 40 1 1.4736 -10.0787 2.5728 41 1 3.3146 -13.7934 2.5486 42 1 5.7737 -14.0338 2.2091 43 1 7.9345 -12.9730 1.8260 44 1 8.1259 -10.5315 1.6385 45 1 6.1542 -9.1047 1.8307 46 1 3.5200 -5.8966 1.3290 47 1 1.9312 -6.0042 2.1472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326440080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = 32.548910 kcal Electronic energy + Delta-G solvation = -28021.655104 eV Core-core repulsion = 24169.298760 eV Total energy + Delta-G solvation = -3852.356345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30727 -39.93896 -37.85170 -37.75382 -35.17243 -33.44493 -32.80840 -31.60422 -31.12732 -30.15973 -29.54944 -27.25943 -25.50811 -24.16693 -23.95050 -23.16342 -22.71803 -21.30130 -20.24759 -19.79138 -18.63903 -17.90027 -17.53277 -17.08086 -16.40379 -16.18324 -15.81112 -15.10295 -14.94734 -14.63861 -14.55194 -14.41081 -14.24809 -13.85893 -13.57985 -13.38139 -13.31240 -13.07780 -12.91728 -12.65930 -12.52961 -12.30547 -12.25615 -11.76419 -11.65226 -11.35981 -11.08332 -10.82739 -10.70682 -10.57922 -10.46925 -10.38916 -10.34869 -9.98864 -9.73514 -9.66060 -9.52058 -8.85767 -8.84860 -8.51649 -6.90217 -5.74824 -3.03349 -0.28626 0.45653 1.27907 2.38911 2.60405 2.78364 3.45445 3.50409 3.52117 3.61458 3.84925 4.03595 4.11796 4.26650 4.39309 4.41889 4.43416 4.54760 4.64427 4.72750 4.78166 4.83307 5.03589 5.07092 5.16214 5.24835 5.30985 5.37037 5.51718 5.52293 5.57886 5.62739 5.64852 5.76384 5.79467 5.87406 5.92525 5.98703 6.05838 6.07250 6.13448 6.23443 6.36702 6.37101 6.37574 6.84512 6.88388 7.24804 7.46293 7.72315 7.86909 8.44418 9.55373 10.13576 10.47990 11.48146 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.001997 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.279987 B =14019.879909 C =14958.495927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.128 4.128 15 C 0.095 3.905 16 N -0.611 5.611 17 C 0.580 3.420 18 O -0.527 6.527 19 C -0.162 4.162 20 C 0.115 3.885 21 N -0.493 5.493 22 C 0.170 3.830 23 C -0.118 4.118 24 C -0.087 4.087 25 C -0.118 4.118 26 C -0.093 4.093 27 C -0.104 4.104 28 C 0.010 3.990 29 C 0.110 3.890 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 -32.087 2.088 33.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.027 4.027 16 N -0.345 5.345 17 C 0.368 3.632 18 O -0.404 6.404 19 C -0.167 4.167 20 C -0.029 4.029 21 N -0.200 5.200 22 C -0.002 4.002 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.136 4.136 26 C -0.112 4.112 27 C -0.122 4.122 28 C 0.004 3.996 29 C -0.012 4.012 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.007 -31.892 2.579 32.983 hybrid contribution 0.912 1.339 -0.111 1.624 sum 8.920 -30.554 2.469 31.925 Atomic orbital electron populations 1.69662 1.05096 1.25615 1.57955 1.24753 0.95559 0.97728 1.03126 0.86178 0.78640 0.83794 0.77538 1.21708 1.20764 1.21770 1.19243 0.91057 0.84210 1.42442 0.91197 1.42364 1.05869 1.00088 1.89512 1.20681 0.93558 0.85587 0.97835 1.21687 0.98573 0.92380 1.02631 1.22350 0.97232 0.94968 0.96808 0.89613 1.22738 0.98380 0.93920 1.01536 1.22240 0.90009 0.96532 0.93958 1.48460 1.31730 1.08360 1.45918 1.17473 0.80714 0.86071 0.78963 1.90827 1.35526 1.68080 1.45987 1.21881 0.94480 0.93683 1.06622 1.22844 0.96429 0.89756 0.93827 1.67144 1.32634 1.06379 1.13855 1.23286 0.86477 1.00110 0.90339 1.18972 0.96027 0.93021 1.03998 1.20991 0.91411 0.99767 0.98474 1.20995 0.98036 0.94966 0.99621 1.21137 0.99094 0.93662 0.97293 1.21164 0.91067 1.01457 0.98537 1.18851 0.92761 0.91832 0.96125 1.22490 1.02046 0.78692 0.97949 0.93549 0.78319 0.96460 0.96291 0.91513 0.91199 0.89960 0.89719 0.91167 0.91361 0.82110 0.81612 0.84577 0.85271 0.85147 0.84052 0.89732 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.83 5.60 -59.91 -0.34 -19.17 16 10 C 0.15 3.00 6.14 -4.05 -0.02 2.98 16 11 C -0.11 -1.71 4.84 -26.73 -0.13 -1.84 16 12 C -0.09 -1.11 3.04 -88.47 -0.27 -1.38 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.13 -1.15 6.42 -24.90 -0.16 -1.31 16 15 C 0.10 0.85 5.92 -3.07 -0.02 0.83 16 16 N -0.61 -7.29 3.33 -171.74 -0.57 -7.87 16 17 C 0.58 7.86 7.07 -12.51 -0.09 7.77 16 18 O -0.53 -8.89 15.59 5.27 0.08 -8.81 16 19 C -0.16 -1.87 5.56 -102.66 -0.57 -2.45 16 20 C 0.12 1.16 9.64 -17.13 -0.17 1.00 16 21 N -0.49 -4.80 10.22 -12.58 -0.13 -4.93 16 22 C 0.17 1.31 11.00 -17.01 -0.19 1.12 16 23 C -0.12 -1.01 5.74 -106.89 -0.61 -1.62 16 24 C -0.09 -0.53 9.82 -39.49 -0.39 -0.92 16 25 C -0.12 -0.73 9.94 -39.91 -0.40 -1.13 16 26 C -0.09 -0.72 9.96 -39.84 -0.40 -1.12 16 27 C -0.10 -1.10 9.29 -39.69 -0.37 -1.47 16 28 C 0.01 0.11 5.90 -104.74 -0.62 -0.51 16 29 C 0.11 1.43 5.74 -2.50 -0.01 1.41 16 30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.39 7.59 -51.93 -0.39 -0.01 16 34 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.52 5.77 -51.93 -0.30 0.22 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.16 1.37 6.13 -52.48 -0.32 1.05 16 41 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 43 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.14 1.70 6.41 -52.49 -0.34 1.36 16 46 H 0.08 1.24 7.95 -51.93 -0.41 0.82 16 47 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -35.01 384.82 -10.79 -45.80 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.68 Total: 5.43 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -4.65 Total: -6.16 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.31 Total: -59.80 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.01 -10.79 -45.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326440080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.349 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds